Wall clock time and date at job start Sun Mar 29 2020 22:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47436 * 120.00185 * 2 1 3 5 5 C 1.52998 * 109.47081 * 174.99814 * 4 2 1 6 6 H 1.09003 * 109.47949 * 54.97505 * 5 4 2 7 7 O 1.42903 * 109.48300 * 294.94263 * 5 4 2 8 8 C 1.42900 * 114.09874 * 178.85832 * 7 5 4 9 9 C 1.53095 * 109.41673 * 61.15733 * 8 7 5 10 10 C 1.53172 * 109.16297 * 302.39412 * 9 8 7 11 11 C 1.53096 * 109.48249 * 175.00009 * 5 4 2 12 12 H 1.08996 * 109.51872 * 57.62261 * 11 5 4 13 13 N 1.46906 * 109.52163 * 297.49982 * 11 5 4 14 14 C 1.46898 * 110.99888 * 154.99816 * 13 11 5 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00458 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99662 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99977 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 120.00066 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47237 * 90.00089 * 19 17 15 21 21 H 1.48504 * 109.46698 * 210.00151 * 19 17 15 22 22 H 1.48502 * 109.46787 * 330.00064 * 19 17 15 23 23 H 1.09008 * 109.46849 * 299.99776 * 1 2 3 24 24 H 1.08990 * 109.47771 * 59.99513 * 1 2 3 25 25 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46909 * 240.00295 * 2 1 3 27 27 H 1.08997 * 109.46864 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47191 * 300.00352 * 3 2 1 29 29 H 1.08998 * 109.47060 * 60.00387 * 3 2 1 30 30 H 1.09001 * 109.47253 * 54.99721 * 4 2 1 31 31 H 1.09001 * 109.46977 * 294.99741 * 4 2 1 32 32 H 1.08996 * 109.48145 * 181.14186 * 8 7 5 33 33 H 1.09002 * 109.48077 * 301.17591 * 8 7 5 34 34 H 1.09004 * 109.51841 * 62.29566 * 9 8 7 35 35 H 1.08993 * 109.52376 * 182.42061 * 9 8 7 36 36 H 1.09008 * 109.54342 * 297.10902 * 10 9 8 37 37 H 1.09004 * 109.54318 * 176.84457 * 10 9 8 38 38 H 1.00902 * 110.99923 * 278.95758 * 13 11 5 39 39 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 40 40 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 41 41 H 0.96997 * 119.99893 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1878 6 1 3.9955 0.1611 1.0521 7 8 3.9387 -1.6672 0.0909 8 6 5.3503 -1.8171 -0.0739 9 6 5.9430 -2.4654 1.1799 10 6 5.6062 -1.6020 2.3995 11 6 4.0859 -1.4398 2.4923 12 1 3.6235 -2.4142 2.6496 13 7 3.7545 -0.5521 3.6150 14 6 3.6804 -1.3028 4.8755 15 6 3.3387 -0.3613 6.0015 16 1 3.1916 0.6897 5.8008 17 6 3.2147 -0.8414 7.2880 18 7 2.9160 -0.0199 8.2706 19 14 3.4698 -2.6592 7.6352 20 1 4.9005 -2.9079 7.9454 21 1 2.6342 -3.0636 8.7943 22 1 3.0771 -3.4508 6.4417 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1583 2.1369 32 1 5.5502 -2.4492 -0.9391 33 1 5.8045 -0.8380 -0.2262 34 1 5.5190 -3.4611 1.3102 35 1 7.0251 -2.5413 1.0739 36 1 6.0716 -0.6222 2.2924 37 1 5.9770 -2.0865 3.3028 38 1 4.4165 0.2062 3.6840 39 1 2.9098 -2.0696 4.7970 40 1 4.6429 -1.7740 5.0749 41 1 2.8292 -0.3576 9.1757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411558723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:25 Heat of formation + Delta-G solvation = -93.418558 kcal Electronic energy + Delta-G solvation = -18367.772565 eV Core-core repulsion = 15666.614807 eV Total energy + Delta-G solvation = -2701.157758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77453 -37.15095 -37.01082 -34.79180 -33.47190 -31.74237 -28.83819 -27.96446 -27.43851 -24.90280 -23.30736 -22.83799 -21.35555 -20.66677 -19.00073 -17.38925 -16.96755 -16.59166 -16.00479 -15.84193 -15.72381 -15.32713 -14.80495 -14.56125 -14.20977 -14.13739 -13.86929 -13.72841 -13.18057 -13.01169 -12.84865 -12.69173 -12.58896 -12.36664 -12.16776 -11.94735 -11.86344 -11.63042 -11.54780 -11.46416 -11.40948 -10.97441 -10.82929 -10.35305 -9.08449 -8.31828 -6.35679 1.31150 1.33803 1.44567 2.31372 2.85307 3.02233 3.47782 3.63782 3.93506 3.93620 4.10942 4.13989 4.19152 4.27402 4.33267 4.49149 4.61638 4.69670 4.77130 4.80723 4.84905 4.90327 4.93226 4.94769 5.01960 5.05116 5.11906 5.16948 5.17809 5.26257 5.32400 5.42937 5.50500 5.53225 5.68405 5.90544 6.35044 6.53479 6.64792 6.75367 7.29201 8.84802 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.006829 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.144281 B = 4099.366331 C = 4967.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.097 4.097 5 C 0.114 3.886 6 H 0.062 0.938 7 O -0.390 6.390 8 C 0.057 3.943 9 C -0.146 4.146 10 C -0.152 4.152 11 C 0.056 3.944 12 H 0.060 0.940 13 N -0.672 5.672 14 C 0.181 3.819 15 C -0.525 4.525 16 H 0.040 0.960 17 C 0.010 3.990 18 N -0.946 5.946 19 Si 0.947 3.053 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.254 1.254 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.337 0.663 39 H 0.019 0.981 40 H -0.016 1.016 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 -3.849 -19.133 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.135 4.135 5 C 0.056 3.944 6 H 0.080 0.920 7 O -0.309 6.309 8 C -0.020 4.020 9 C -0.184 4.184 10 C -0.191 4.191 11 C -0.055 4.055 12 H 0.078 0.922 13 N -0.302 5.302 14 C 0.052 3.948 15 C -0.563 4.563 16 H 0.059 0.941 17 C -0.187 4.187 18 N -0.586 5.586 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.178 1.178 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.155 0.845 39 H 0.037 0.963 40 H 0.002 0.998 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.692 -3.954 -19.185 19.773 hybrid contribution 1.147 -0.600 1.351 1.871 sum 3.839 -4.554 -17.834 18.803 Atomic orbital electron populations 1.21820 0.94897 1.01644 1.01841 1.21032 0.95876 0.96233 0.97659 1.21848 1.00794 0.95766 1.01691 1.21544 0.92596 1.00482 0.98863 1.21919 0.95866 0.92547 0.84113 0.92001 1.87900 1.23616 1.70157 1.49237 1.22739 0.80739 1.00683 0.97802 1.22143 1.02394 0.99274 0.94592 1.22333 0.96500 1.01104 0.99133 1.22259 0.94353 0.96372 0.92522 0.92155 1.60366 1.54600 1.11966 1.03260 1.19703 0.94049 0.93532 0.87515 1.21320 1.47338 0.95650 0.92001 0.94135 1.25823 0.94390 1.02685 0.95842 1.70044 1.50260 1.37325 1.00972 0.85726 0.78855 0.79950 0.78451 1.19093 1.20534 1.17834 0.93388 0.91526 0.92910 0.90920 0.93003 0.91688 0.93455 0.93004 0.90831 0.86905 0.92463 0.91772 0.88964 0.91093 0.92850 0.84490 0.96303 0.99828 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.19 71.98 0.66 -2.57 16 2 C -0.09 -2.20 2.87 -10.79 -0.03 -2.23 16 3 C -0.14 -3.30 8.95 71.98 0.64 -2.65 16 4 C -0.10 -2.91 4.32 30.59 0.13 -2.78 16 5 C 0.11 3.30 2.21 30.63 0.07 3.37 16 6 H 0.06 1.75 6.34 -2.39 -0.02 1.74 16 7 O -0.39 -10.47 9.86 -148.98 -1.47 -11.94 16 8 C 0.06 1.15 6.84 72.01 0.49 1.65 16 9 C -0.15 -3.15 6.14 30.68 0.19 -2.96 16 10 C -0.15 -4.23 5.28 30.71 0.16 -4.07 16 11 C 0.06 1.85 2.08 45.00 0.09 1.94 16 12 H 0.06 2.20 7.80 -2.39 -0.02 2.18 16 13 N -0.67 -27.09 5.51 -495.11 -2.73 -29.81 16 14 C 0.18 8.68 4.31 85.56 0.37 9.05 16 15 C -0.52 -30.48 9.87 25.60 0.25 -30.23 16 16 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 17 C 0.01 0.61 5.47 84.65 0.46 1.07 16 18 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 19 Si 0.95 44.54 27.47 68.60 1.88 46.43 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 23 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.77 7.70 -2.39 -0.02 1.75 16 27 H 0.05 1.18 6.46 -2.39 -0.02 1.17 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.07 2.56 7.54 -2.39 -0.02 2.54 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.86 8.09 -2.38 -0.02 1.84 16 37 H 0.05 1.63 7.57 -2.38 -0.02 1.61 16 38 H 0.34 13.30 8.43 -89.69 -0.76 12.54 16 39 H 0.02 0.94 7.11 -2.39 -0.02 0.92 16 40 H -0.02 -0.75 6.96 -2.39 -0.02 -0.76 16 41 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -64.28 316.88 1.65 -62.64 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.16 Total: 22.08 kcal Atomic # 6 Polarization: -33.92 SS G_CDS: 3.50 Total: -30.42 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.43 Total: -88.79 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: -1.47 Total: -11.94 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -64.28 1.65 -62.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.783 kcal (2) G-P(sol) polarization free energy of solvation -64.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds