Wall clock time and date at job start Sun Mar 29 2020 22:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47394 * 2 1 4 4 C 1.52995 * 109.47155 * 120.00168 * 2 1 3 5 5 C 1.53007 * 109.47146 * 65.84536 * 4 2 1 6 6 H 1.08993 * 109.49084 * 304.49351 * 5 4 2 7 7 O 1.42902 * 109.47700 * 64.51811 * 5 4 2 8 8 C 1.42905 * 114.09645 * 181.14131 * 7 5 4 9 9 C 1.53097 * 109.41439 * 298.84206 * 8 7 5 10 10 C 1.53182 * 109.16138 * 57.60774 * 9 8 7 11 11 C 1.53092 * 109.47959 * 184.45776 * 5 4 2 12 12 H 1.08994 * 109.52803 * 302.37723 * 11 5 4 13 13 N 1.46904 * 109.51823 * 62.50838 * 11 5 4 14 14 C 1.46904 * 110.99655 * 204.99682 * 13 11 5 15 15 C 1.50695 * 109.47117 * 179.97438 * 14 13 11 16 16 H 1.07997 * 120.00122 * 0.02562 * 15 14 13 17 17 C 1.37884 * 120.00058 * 180.27733 * 15 14 13 18 18 N 1.31514 * 119.99900 * 359.72138 * 17 15 14 19 19 Si 1.86795 * 119.99787 * 179.72540 * 17 15 14 20 20 H 1.48501 * 109.47427 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47055 * 120.00115 * 19 17 15 22 22 H 1.48504 * 109.47025 * 239.99448 * 19 17 15 23 23 H 1.09006 * 109.46751 * 300.00301 * 1 2 3 24 24 H 1.09000 * 109.47080 * 59.99832 * 1 2 3 25 25 H 1.08997 * 109.47471 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47015 * 240.00172 * 2 1 3 27 27 H 1.09000 * 109.47180 * 300.42483 * 3 2 1 28 28 H 1.08996 * 109.47090 * 60.42416 * 3 2 1 29 29 H 1.09001 * 109.46902 * 180.42732 * 3 2 1 30 30 H 1.09000 * 109.47275 * 305.85098 * 4 2 1 31 31 H 1.09000 * 109.47460 * 185.84193 * 4 2 1 32 32 H 1.08997 * 109.48210 * 58.82391 * 8 7 5 33 33 H 1.08995 * 109.48281 * 178.86143 * 8 7 5 34 34 H 1.08999 * 109.52221 * 177.51234 * 9 8 7 35 35 H 1.09002 * 109.52447 * 297.63931 * 9 8 7 36 36 H 1.09002 * 109.54038 * 183.15266 * 10 9 8 37 37 H 1.09002 * 109.54140 * 62.88839 * 10 9 8 38 38 H 1.00894 * 111.00093 * 81.04653 * 13 11 5 39 39 H 1.08998 * 109.47075 * 59.99735 * 14 13 11 40 40 H 1.09006 * 109.47087 * 299.99758 * 14 13 11 41 41 H 0.96997 * 120.00062 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6534 -2.2000 1.1778 6 1 0.5754 -2.2880 1.0437 7 8 2.3226 -2.8147 0.0749 8 6 2.0103 -4.1983 -0.0993 9 6 2.4364 -4.9772 1.1480 10 6 1.7298 -4.3895 2.3735 11 6 2.0652 -2.8985 2.4764 12 1 3.1369 -2.7753 2.6324 13 7 1.3336 -2.3076 3.6049 14 6 2.0710 -2.4880 4.8626 15 6 1.2918 -1.8700 5.9948 16 1 0.3435 -1.3914 5.7998 17 6 1.7921 -1.9109 7.2791 18 7 2.9466 -2.4942 7.5167 19 14 0.8298 -1.1381 8.6812 20 1 -0.4278 -0.5504 8.1538 21 1 0.5056 -2.1775 9.6911 22 1 1.6471 -0.0716 9.3137 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6705 1.9585 -0.8861 28 1 1.6830 1.9541 0.8937 29 1 3.1300 1.4424 -0.0077 30 1 1.5936 -0.2715 2.1361 31 1 3.1249 -0.6316 1.3031 32 1 0.9369 -4.3125 -0.2501 33 1 2.5427 -4.5845 -0.9684 34 1 2.1591 -6.0252 1.0353 35 1 3.5160 -4.8977 1.2759 36 1 2.0712 -4.9030 3.2723 37 1 0.6521 -4.5145 2.2677 38 1 0.4030 -2.6912 3.6732 39 1 3.0447 -2.0043 4.7855 40 1 2.2082 -3.5524 5.0539 41 1 3.2984 -2.5233 8.4202 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411558725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:27 Heat of formation + Delta-G solvation = -96.927300 kcal Electronic energy + Delta-G solvation = -18308.882149 eV Core-core repulsion = 15607.572241 eV Total energy + Delta-G solvation = -2701.309909 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.76460 -37.10091 -36.99907 -34.82512 -33.42064 -31.51037 -28.54108 -27.94457 -27.36960 -25.03200 -23.56058 -22.88934 -21.36158 -20.66113 -18.63306 -17.33224 -16.93529 -16.68425 -16.08989 -15.82398 -15.64145 -15.22730 -14.76975 -14.50650 -14.13335 -13.96724 -13.74877 -13.55973 -13.15577 -13.00560 -12.82612 -12.72798 -12.59918 -12.37624 -12.20704 -12.11994 -11.92426 -11.63196 -11.49875 -11.41468 -11.33076 -10.96939 -10.67535 -10.34811 -9.04371 -8.23530 -6.34650 1.40237 1.41228 1.54977 2.38875 2.87111 3.10099 3.54286 3.64201 3.92573 3.94109 4.11428 4.15367 4.19535 4.28958 4.33849 4.49170 4.61134 4.69986 4.82230 4.85715 4.91445 4.92798 4.94938 5.00391 5.05005 5.10731 5.17418 5.18265 5.25266 5.29982 5.34047 5.43659 5.54126 5.61086 5.68881 5.99989 6.30290 6.46761 6.71364 6.88901 7.36510 8.88373 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020906 B = 0.006393 C = 0.005242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.027380 B = 4378.979591 C = 5340.090198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.144 4.144 4 C -0.096 4.096 5 C 0.116 3.884 6 H 0.066 0.934 7 O -0.392 6.392 8 C 0.059 3.941 9 C -0.146 4.146 10 C -0.149 4.149 11 C 0.058 3.942 12 H 0.047 0.953 13 N -0.671 5.671 14 C 0.215 3.785 15 C -0.532 4.532 16 H 0.067 0.933 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.973 3.027 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.279 1.279 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.335 0.665 39 H -0.007 1.007 40 H -0.040 1.040 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.477 -0.256 -16.463 17.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.133 4.133 5 C 0.058 3.942 6 H 0.084 0.916 7 O -0.310 6.310 8 C -0.018 4.018 9 C -0.185 4.185 10 C -0.188 4.188 11 C -0.053 4.053 12 H 0.065 0.935 13 N -0.301 5.301 14 C 0.087 3.913 15 C -0.570 4.570 16 H 0.085 0.915 17 C -0.198 4.198 18 N -0.576 5.576 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.205 1.205 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.153 0.847 39 H 0.011 0.989 40 H -0.022 1.022 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.981 0.460 -16.564 17.042 hybrid contribution -0.099 -1.044 1.637 1.944 sum -4.080 -0.583 -14.927 15.486 Atomic orbital electron populations 1.21839 0.94756 1.01570 1.01822 1.21034 0.96241 0.96056 0.97467 1.21818 1.00717 0.95700 1.01941 1.21534 1.00265 0.92546 0.98995 1.21916 0.95762 0.92761 0.83763 0.91617 1.87894 1.70178 1.24135 1.48838 1.22733 1.00785 0.80692 0.97556 1.22151 1.00527 1.01020 0.94767 1.22293 1.01242 0.96519 0.98718 1.22204 0.97672 0.92599 0.92836 0.93466 1.60530 1.05330 1.60865 1.03406 1.19145 0.93101 0.92433 0.86595 1.21577 1.06449 1.36485 0.92507 0.91525 1.25964 0.96064 0.95875 1.01883 1.70106 1.20402 1.45292 1.21822 0.85282 0.78758 0.78040 0.78201 1.18465 1.20337 1.20515 0.93183 0.91620 0.92988 0.91043 0.91403 0.93204 0.93175 0.90683 0.93591 0.92093 0.86823 0.88914 0.92288 0.93862 0.90762 0.84715 0.98890 1.02186 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.97 71.98 0.65 -2.57 16 2 C -0.09 -2.24 2.87 -10.80 -0.03 -2.28 16 3 C -0.14 -3.27 9.19 71.98 0.66 -2.61 16 4 C -0.10 -3.01 4.31 30.59 0.13 -2.88 16 5 C 0.12 3.58 2.21 30.63 0.07 3.65 16 6 H 0.07 1.92 6.40 -2.39 -0.02 1.90 16 7 O -0.39 -11.29 9.83 -148.98 -1.46 -12.75 16 8 C 0.06 1.30 6.84 72.01 0.49 1.80 16 9 C -0.15 -3.63 6.14 30.69 0.19 -3.44 16 10 C -0.15 -4.70 5.28 30.71 0.16 -4.54 16 11 C 0.06 2.13 2.08 45.00 0.09 2.22 16 12 H 0.05 2.00 7.80 -2.39 -0.02 1.98 16 13 N -0.67 -28.77 5.52 -495.10 -2.73 -31.50 16 14 C 0.22 11.66 5.24 85.55 0.45 12.10 16 15 C -0.53 -30.43 9.32 25.60 0.24 -30.19 16 16 H 0.07 3.68 7.81 -2.91 -0.02 3.66 16 17 C 0.00 0.01 5.46 84.66 0.46 0.47 16 18 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 19 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.17 6.50 -2.39 -0.02 1.15 16 26 H 0.07 1.80 7.66 -2.38 -0.02 1.78 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 2.67 7.55 -2.39 -0.02 2.65 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.04 1.57 7.57 -2.39 -0.02 1.55 16 37 H 0.07 2.12 8.09 -2.39 -0.02 2.11 16 38 H 0.34 13.56 8.43 -89.70 -0.76 12.80 16 39 H -0.01 -0.42 8.06 -2.39 -0.02 -0.44 16 40 H -0.04 -2.31 7.53 -2.38 -0.02 -2.32 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -63.78 320.52 1.89 -61.89 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.22 Total: 21.06 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 3.56 Total: -28.26 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -2.45 Total: -88.45 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -1.46 Total: -12.75 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -63.78 1.89 -61.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.038 kcal (2) G-P(sol) polarization free energy of solvation -63.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds