Wall clock time and date at job start Sun Mar 29 2020 22:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.53006 * 109.47508 * 120.00642 * 2 1 3 5 5 C 1.52998 * 109.47202 * 174.10760 * 4 2 1 6 6 H 1.09004 * 109.47709 * 55.50240 * 5 4 2 7 7 O 1.42898 * 109.47921 * 295.46904 * 5 4 2 8 8 C 1.42909 * 114.15332 * 178.89361 * 7 5 4 9 9 C 1.53098 * 109.41193 * 61.05772 * 8 7 5 10 10 C 1.53178 * 109.21372 * 302.49070 * 9 8 7 11 11 C 1.53089 * 109.47690 * 175.52555 * 5 4 2 12 12 H 1.09010 * 109.52393 * 297.49651 * 11 5 4 13 13 N 1.46899 * 109.52629 * 57.68486 * 11 5 4 14 14 C 1.46896 * 111.00125 * 204.68407 * 13 11 5 15 15 C 1.50700 * 109.46979 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00126 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00137 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47083 * 119.99857 * 19 17 15 22 22 H 1.48503 * 109.46734 * 239.99966 * 19 17 15 23 23 H 1.09005 * 109.47247 * 174.74478 * 1 2 3 24 24 H 1.09004 * 109.46918 * 294.73974 * 1 2 3 25 25 H 1.08991 * 109.47319 * 54.73782 * 1 2 3 26 26 H 1.09006 * 109.46946 * 239.99951 * 2 1 3 27 27 H 1.09004 * 109.46950 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47259 * 299.99943 * 3 2 1 29 29 H 1.08997 * 109.47026 * 60.00691 * 3 2 1 30 30 H 1.08993 * 109.47264 * 54.10269 * 4 2 1 31 31 H 1.09004 * 109.46496 * 294.10760 * 4 2 1 32 32 H 1.08997 * 109.42705 * 301.11077 * 8 7 5 33 33 H 1.08999 * 109.54305 * 181.06753 * 8 7 5 34 34 H 1.08999 * 109.52541 * 182.55602 * 9 8 7 35 35 H 1.09000 * 109.52168 * 62.42696 * 9 8 7 36 36 H 1.09003 * 109.54518 * 176.81193 * 10 9 8 37 37 H 1.08995 * 109.54736 * 296.99245 * 10 9 8 38 38 H 1.00895 * 110.99989 * 328.64040 * 13 11 5 39 39 H 1.08998 * 109.47442 * 299.99629 * 14 13 11 40 40 H 1.09001 * 109.47161 * 60.00164 * 14 13 11 41 41 H 0.97001 * 120.00243 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5629 -0.8509 1.1772 6 1 4.0056 0.1361 1.0427 7 8 3.9185 -1.6873 0.0746 8 6 5.3266 -1.8565 -0.1008 9 6 5.9192 -2.5162 1.1472 10 6 5.6018 -1.6535 2.3724 11 6 4.0843 -1.4717 2.4758 12 1 3.8526 -0.8132 3.3131 13 7 3.4466 -2.7782 2.6861 14 6 3.4370 -3.1361 4.1108 15 6 2.7771 -4.4795 4.2868 16 1 2.4027 -5.0141 3.4263 17 6 2.6514 -5.0261 5.5463 18 7 3.1077 -4.3754 6.5941 19 14 1.8340 -6.6917 5.7643 20 1 1.4107 -7.2125 4.4397 21 1 2.7961 -7.6378 6.3843 22 1 0.6450 -6.5484 6.6424 23 1 -0.3634 -1.0234 -0.0941 24 1 -0.3633 0.4301 0.9334 25 1 -0.3633 0.5932 -0.8390 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.5932 -1.7140 1.3035 31 1 1.7654 -0.1503 2.1361 32 1 5.7925 -0.8830 -0.2533 33 1 5.5126 -2.4887 -0.9691 34 1 6.9997 -2.6049 1.0342 35 1 5.4840 -3.5071 1.2768 36 1 5.9721 -2.1464 3.2713 37 1 6.0806 -0.6800 2.2669 38 1 2.5129 -2.7905 2.3039 39 1 4.4613 -3.1838 4.4804 40 1 2.8832 -2.3827 4.6710 41 1 3.0189 -4.7598 7.4803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411558726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:30 Heat of formation + Delta-G solvation = -73.566571 kcal Electronic energy + Delta-G solvation = -18461.145928 eV Core-core repulsion = 15760.849016 eV Total energy + Delta-G solvation = -2700.296912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51581 -36.05601 -35.09053 -32.77863 -31.97330 -29.99069 -27.15987 -26.92621 -25.86315 -23.64378 -22.05663 -21.63991 -19.77545 -18.86065 -16.58424 -15.90780 -15.70210 -15.22056 -14.77943 -14.49725 -14.21678 -13.85555 -13.25290 -13.14767 -12.63264 -12.52231 -12.19629 -12.03929 -11.91020 -11.74404 -11.63548 -11.21590 -11.10180 -10.79518 -10.69486 -10.54764 -10.49516 -10.41292 -10.18756 -9.92579 -9.75789 -9.11977 -8.84217 -8.45508 -7.17398 -6.00794 -4.02072 3.32391 3.39631 3.45318 4.09700 4.45732 4.80786 5.00191 5.03706 5.18241 5.31697 5.34154 5.35619 5.38475 5.46301 5.56610 5.64920 5.69906 5.77174 5.83977 5.86266 5.93874 5.97771 6.02970 6.15018 6.18140 6.27940 6.31998 6.46054 6.49741 6.56227 6.65845 6.88229 7.30813 7.46556 7.61855 7.84080 8.18055 8.48798 8.69276 9.08584 9.62981 11.10389 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.006439 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.936847 B = 4347.135666 C = 5060.771196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.112 4.112 5 C 0.094 3.906 6 H 0.054 0.946 7 O -0.368 6.368 8 C 0.068 3.932 9 C -0.145 4.145 10 C -0.107 4.107 11 C 0.056 3.944 12 H 0.040 0.960 13 N -0.674 5.674 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.062 0.938 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.331 0.669 39 H 0.026 0.974 40 H -0.017 1.017 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.790 10.028 -12.588 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.149 4.149 5 C 0.036 3.964 6 H 0.072 0.928 7 O -0.287 6.287 8 C -0.009 4.009 9 C -0.183 4.183 10 C -0.146 4.146 11 C -0.055 4.055 12 H 0.057 0.943 13 N -0.307 5.307 14 C 0.067 3.933 15 C -0.549 4.549 16 H 0.080 0.920 17 C -0.146 4.146 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.151 0.849 39 H 0.044 0.956 40 H 0.001 0.999 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.233 9.567 -12.644 15.903 hybrid contribution -0.754 -0.179 0.974 1.245 sum 0.479 9.388 -11.669 14.985 Atomic orbital electron populations 1.21844 0.95519 1.01767 1.01318 1.21048 0.95279 0.95782 0.99038 1.21899 1.01011 0.96352 1.01246 1.21715 0.93582 1.01718 0.97913 1.22256 0.95194 0.92362 0.86633 0.92809 1.87879 1.22360 1.69869 1.48573 1.22449 0.81988 0.98583 0.97836 1.22020 0.99454 1.02054 0.94768 1.21531 0.95510 0.98482 0.99038 1.22059 0.95288 0.92551 0.95650 0.94255 1.60607 1.24647 1.25292 1.20185 1.19592 0.96742 0.95122 0.81794 1.21238 1.37421 1.03489 0.92721 0.91957 1.24986 0.95876 0.97830 0.95912 1.69976 1.46925 1.38412 0.98586 0.86454 0.78998 0.83918 0.78124 1.19642 1.21047 1.21146 0.92534 0.92876 0.93094 0.90399 0.92739 0.93106 0.92946 0.90295 0.90916 0.94569 0.89677 0.92506 0.89211 0.91292 0.93275 0.84893 0.95584 0.99907 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.09 -1.12 2.87 -90.62 -0.26 -1.38 16 3 C -0.15 -1.57 8.97 37.16 0.33 -1.24 16 4 C -0.11 -1.59 3.99 -26.73 -0.11 -1.70 16 5 C 0.09 1.42 2.25 -26.69 -0.06 1.36 16 6 H 0.05 0.75 6.40 -51.93 -0.33 0.42 16 7 O -0.37 -5.88 9.73 -35.23 -0.34 -6.22 16 8 C 0.07 0.95 6.85 37.21 0.25 1.20 16 9 C -0.15 -2.25 5.96 -26.59 -0.16 -2.41 16 10 C -0.11 -1.80 5.64 -26.54 -0.15 -1.95 16 11 C 0.06 1.01 2.36 -67.57 -0.16 0.85 16 12 H 0.04 0.75 7.81 -51.92 -0.41 0.35 16 13 N -0.67 -14.61 5.60 -107.84 -0.60 -15.22 16 14 C 0.19 5.13 5.24 -4.98 -0.03 5.10 16 15 C -0.51 -14.62 9.32 -34.44 -0.32 -14.94 16 16 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 17 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 19 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 1.01 7.66 -51.93 -0.40 0.61 16 27 H 0.05 0.59 6.50 -51.93 -0.34 0.25 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.25 6.34 -51.93 -0.33 0.92 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 1.65 7.76 -51.93 -0.40 1.25 16 36 H 0.07 1.30 7.40 -51.93 -0.38 0.91 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.33 7.07 6.11 -39.29 -0.24 6.83 16 39 H 0.03 0.74 7.40 -51.93 -0.38 0.36 16 40 H -0.02 -0.47 8.06 -51.93 -0.42 -0.89 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -29.98 316.55 -8.28 -38.26 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.41 Total: 2.75 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.41 Total: -14.88 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.13 Total: -41.61 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.34 Total: -6.22 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.98 -8.28 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.310 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds