Wall clock time and date at job start Sun Mar 29 2020 22:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47252 * 2 1 4 4 C 1.53006 * 109.47508 * 120.00642 * 2 1 3 5 5 C 1.52998 * 109.47202 * 174.10760 * 4 2 1 6 6 H 1.09004 * 109.47709 * 55.50240 * 5 4 2 7 7 O 1.42898 * 109.47921 * 295.46904 * 5 4 2 8 8 C 1.42909 * 114.15332 * 178.89361 * 7 5 4 9 9 C 1.53098 * 109.41193 * 61.05772 * 8 7 5 10 10 C 1.53178 * 109.21372 * 302.49070 * 9 8 7 11 11 C 1.53089 * 109.47690 * 175.52555 * 5 4 2 12 12 H 1.09010 * 109.52393 * 297.49651 * 11 5 4 13 13 N 1.46899 * 109.52629 * 57.68486 * 11 5 4 14 14 C 1.46896 * 111.00125 * 204.68407 * 13 11 5 15 15 C 1.50700 * 109.46979 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00326 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00126 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00106 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00137 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.46936 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47083 * 119.99857 * 19 17 15 22 22 H 1.48503 * 109.46734 * 239.99966 * 19 17 15 23 23 H 1.09005 * 109.47247 * 174.74478 * 1 2 3 24 24 H 1.09004 * 109.46918 * 294.73974 * 1 2 3 25 25 H 1.08991 * 109.47319 * 54.73782 * 1 2 3 26 26 H 1.09006 * 109.46946 * 239.99951 * 2 1 3 27 27 H 1.09004 * 109.46950 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47259 * 299.99943 * 3 2 1 29 29 H 1.08997 * 109.47026 * 60.00691 * 3 2 1 30 30 H 1.08993 * 109.47264 * 54.10269 * 4 2 1 31 31 H 1.09004 * 109.46496 * 294.10760 * 4 2 1 32 32 H 1.08997 * 109.42705 * 301.11077 * 8 7 5 33 33 H 1.08999 * 109.54305 * 181.06753 * 8 7 5 34 34 H 1.08999 * 109.52541 * 182.55602 * 9 8 7 35 35 H 1.09000 * 109.52168 * 62.42696 * 9 8 7 36 36 H 1.09003 * 109.54518 * 176.81193 * 10 9 8 37 37 H 1.08995 * 109.54736 * 296.99245 * 10 9 8 38 38 H 1.00895 * 110.99989 * 328.64040 * 13 11 5 39 39 H 1.08998 * 109.47442 * 299.99629 * 14 13 11 40 40 H 1.09001 * 109.47161 * 60.00164 * 14 13 11 41 41 H 0.97001 * 120.00243 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5629 -0.8509 1.1772 6 1 4.0056 0.1361 1.0427 7 8 3.9185 -1.6873 0.0746 8 6 5.3266 -1.8565 -0.1008 9 6 5.9192 -2.5162 1.1472 10 6 5.6018 -1.6535 2.3724 11 6 4.0843 -1.4717 2.4758 12 1 3.8526 -0.8132 3.3131 13 7 3.4466 -2.7782 2.6861 14 6 3.4370 -3.1361 4.1108 15 6 2.7771 -4.4795 4.2868 16 1 2.4027 -5.0141 3.4263 17 6 2.6514 -5.0261 5.5463 18 7 3.1077 -4.3754 6.5941 19 14 1.8340 -6.6917 5.7643 20 1 1.4107 -7.2125 4.4397 21 1 2.7961 -7.6378 6.3843 22 1 0.6450 -6.5484 6.6424 23 1 -0.3634 -1.0234 -0.0941 24 1 -0.3633 0.4301 0.9334 25 1 -0.3633 0.5932 -0.8390 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.5932 -1.7140 1.3035 31 1 1.7654 -0.1503 2.1361 32 1 5.7925 -0.8830 -0.2533 33 1 5.5126 -2.4887 -0.9691 34 1 6.9997 -2.6049 1.0342 35 1 5.4840 -3.5071 1.2768 36 1 5.9721 -2.1464 3.2713 37 1 6.0806 -0.6800 2.2669 38 1 2.5129 -2.7905 2.3039 39 1 4.4613 -3.1838 4.4804 40 1 2.8832 -2.3827 4.6710 41 1 3.0189 -4.7598 7.4803 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411558726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:29 Heat of formation + Delta-G solvation = -92.447742 kcal Electronic energy + Delta-G solvation = -18461.964677 eV Core-core repulsion = 15760.849016 eV Total energy + Delta-G solvation = -2701.115661 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81361 -37.07479 -36.77906 -34.75747 -33.37765 -31.56318 -28.43139 -27.97683 -27.61373 -25.03519 -23.66131 -23.23921 -20.78568 -20.29477 -18.64106 -17.17244 -17.06021 -16.82447 -16.42802 -15.96612 -15.31426 -15.12880 -14.70444 -14.48098 -14.30349 -13.97792 -13.56211 -13.40079 -13.24882 -13.01340 -13.00057 -12.75994 -12.54469 -12.45365 -12.16910 -11.98986 -11.85823 -11.54760 -11.51346 -11.43763 -11.25009 -10.90766 -10.67216 -10.16565 -9.02759 -8.23951 -6.34862 1.38931 1.39612 1.53885 2.38553 2.91777 3.09163 3.59999 3.66915 3.87020 4.04952 4.08656 4.17123 4.21950 4.29419 4.39359 4.54980 4.58877 4.74004 4.77633 4.79678 4.85988 4.90677 5.00088 5.04447 5.06545 5.12199 5.14105 5.17894 5.27008 5.30101 5.36493 5.49029 5.54476 5.58147 5.63629 6.03436 6.42029 6.50021 6.76155 6.91258 7.36410 8.87846 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022236 B = 0.006439 C = 0.005531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.936847 B = 4347.135666 C = 5060.771196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.111 4.111 5 C 0.104 3.896 6 H 0.078 0.922 7 O -0.382 6.382 8 C 0.066 3.934 9 C -0.141 4.141 10 C -0.108 4.108 11 C 0.048 3.952 12 H 0.026 0.974 13 N -0.670 5.670 14 C 0.213 3.787 15 C -0.533 4.533 16 H 0.060 0.940 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.048 0.952 24 H 0.052 0.948 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.333 0.667 39 H -0.003 1.003 40 H -0.045 1.045 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 10.491 -14.241 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.202 4.202 4 C -0.149 4.149 5 C 0.046 3.954 6 H 0.096 0.904 7 O -0.302 6.302 8 C -0.010 4.010 9 C -0.179 4.179 10 C -0.147 4.147 11 C -0.063 4.063 12 H 0.044 0.956 13 N -0.303 5.303 14 C 0.086 3.914 15 C -0.571 4.571 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.202 1.202 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.153 0.847 39 H 0.015 0.985 40 H -0.027 1.027 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.122 10.042 -14.318 17.525 hybrid contribution -0.668 -0.283 1.490 1.657 sum 0.454 9.759 -12.828 16.125 Atomic orbital electron populations 1.21836 0.94768 1.01668 1.02076 1.20989 0.95912 0.96457 0.97189 1.21875 1.01012 0.95164 1.02166 1.21710 0.93099 1.00843 0.99260 1.22195 0.95684 0.92841 0.84689 0.90397 1.87875 1.23877 1.70134 1.48265 1.22633 0.80859 1.00213 0.97293 1.21978 1.00963 0.99923 0.95039 1.21552 0.94452 1.00148 0.98507 1.22256 0.96216 0.90622 0.97169 0.95593 1.60507 1.24894 1.28045 1.16882 1.19187 0.94164 0.93958 0.84129 1.21556 1.38010 1.04447 0.93072 0.92141 1.25940 0.96242 1.02020 0.95416 1.70099 1.47809 1.40371 0.99207 0.85295 0.78057 0.78617 0.78392 1.18815 1.20306 1.20152 0.93316 0.92880 0.91357 0.91059 0.92680 0.91561 0.92698 0.92501 0.91144 0.91829 0.87850 0.90037 0.92821 0.94426 0.90144 0.84728 0.98483 1.02723 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.19 71.98 0.66 -2.34 16 2 C -0.09 -1.96 2.87 -10.79 -0.03 -1.99 16 3 C -0.15 -2.70 8.97 71.98 0.65 -2.06 16 4 C -0.11 -3.13 3.99 30.60 0.12 -3.01 16 5 C 0.10 3.04 2.25 30.62 0.07 3.11 16 6 H 0.08 1.96 6.40 -2.39 -0.02 1.94 16 7 O -0.38 -11.58 9.73 -148.98 -1.45 -13.03 16 8 C 0.07 1.66 6.85 72.01 0.49 2.16 16 9 C -0.14 -4.22 5.96 30.69 0.18 -4.04 16 10 C -0.11 -3.62 5.64 30.72 0.17 -3.45 16 11 C 0.05 1.77 2.36 45.01 0.11 1.87 16 12 H 0.03 1.03 7.81 -2.38 -0.02 1.01 16 13 N -0.67 -30.19 5.60 -495.10 -2.77 -32.96 16 14 C 0.21 11.86 5.24 85.56 0.45 12.31 16 15 C -0.53 -31.41 9.32 25.60 0.24 -31.18 16 16 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 19 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.72 7.66 -2.38 -0.02 1.70 16 27 H 0.05 1.02 6.50 -2.39 -0.02 1.00 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 1.84 6.34 -2.39 -0.02 1.82 16 31 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.99 7.76 -2.39 -0.02 1.97 16 36 H 0.04 1.47 7.40 -2.39 -0.02 1.45 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.33 14.74 6.11 -89.70 -0.55 14.19 16 39 H 0.00 -0.18 7.40 -2.39 -0.02 -0.19 16 40 H -0.04 -2.68 8.06 -2.39 -0.02 -2.70 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -65.87 316.55 2.09 -63.78 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: 0.43 Total: 20.20 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 3.57 Total: -28.03 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -2.49 Total: -90.31 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: -1.45 Total: -13.03 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -65.87 2.09 -63.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.668 kcal (2) G-P(sol) polarization free energy of solvation -65.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds