Wall clock time and date at job start Sun Mar 29 2020 22:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.53001 * 109.47233 * 119.99916 * 2 1 3 5 5 C 1.53000 * 109.46963 * 65.87575 * 4 2 1 6 6 H 1.09005 * 109.49049 * 305.13698 * 5 4 2 7 7 O 1.42903 * 109.48271 * 65.16300 * 5 4 2 8 8 C 1.42896 * 114.09755 * 181.13936 * 7 5 4 9 9 C 1.53090 * 109.42078 * 298.84388 * 8 7 5 10 10 C 1.53179 * 109.15916 * 57.60780 * 9 8 7 11 11 C 1.53087 * 109.48168 * 185.11379 * 5 4 2 12 12 H 1.08995 * 109.52923 * 62.43539 * 11 5 4 13 13 N 1.46908 * 109.51864 * 302.31319 * 11 5 4 14 14 C 1.46901 * 110.99957 * 155.00234 * 13 11 5 15 15 C 1.50697 * 109.46811 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00560 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00335 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00073 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47060 * 90.00101 * 19 17 15 21 21 H 1.48493 * 109.47458 * 210.00161 * 19 17 15 22 22 H 1.48506 * 109.47070 * 330.00521 * 19 17 15 23 23 H 1.09007 * 109.47369 * 299.99780 * 1 2 3 24 24 H 1.08995 * 109.47413 * 59.99548 * 1 2 3 25 25 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47211 * 240.00368 * 2 1 3 27 27 H 1.09004 * 109.46801 * 60.34734 * 3 2 1 28 28 H 1.08995 * 109.47063 * 180.34307 * 3 2 1 29 29 H 1.09001 * 109.47245 * 300.34965 * 3 2 1 30 30 H 1.08996 * 109.46931 * 305.87737 * 4 2 1 31 31 H 1.08994 * 109.46883 * 185.87255 * 4 2 1 32 32 H 1.09001 * 109.48359 * 58.83144 * 8 7 5 33 33 H 1.09007 * 109.48399 * 178.85227 * 8 7 5 34 34 H 1.08994 * 109.52837 * 177.51556 * 9 8 7 35 35 H 1.08997 * 109.52579 * 297.70746 * 9 8 7 36 36 H 1.09000 * 109.54416 * 183.15153 * 10 9 8 37 37 H 1.09003 * 109.54451 * 62.88977 * 10 9 8 38 38 H 1.00908 * 110.99713 * 278.95174 * 13 11 5 39 39 H 1.08995 * 109.47243 * 299.99799 * 14 13 11 40 40 H 1.09003 * 109.47255 * 60.00316 * 14 13 11 41 41 H 0.97001 * 120.00344 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6542 -2.2000 1.1776 6 1 0.5775 -2.2883 1.0317 7 8 2.3354 -2.8179 0.0839 8 6 2.0249 -4.2018 -0.0900 9 6 2.4369 -4.9774 1.1639 10 6 1.7168 -4.3864 2.3799 11 6 2.0511 -2.8951 2.4825 12 1 1.5000 -2.4536 3.3128 13 7 3.4934 -2.7297 2.7077 14 6 3.8179 -2.8287 4.1370 15 6 5.3025 -2.6551 4.3282 16 1 5.9413 -2.4884 3.4735 17 6 5.8456 -2.7101 5.5943 18 7 7.1413 -2.5582 5.7613 19 14 4.7410 -2.9991 7.0727 20 1 4.6269 -4.4576 7.3278 21 1 5.3243 -2.3324 8.2644 22 1 3.3934 -2.4373 6.8012 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6817 1.9545 0.8931 28 1 3.1299 1.4426 -0.0062 29 1 1.6715 1.9582 -0.8868 30 1 1.5933 -0.2717 2.1361 31 1 3.1249 -0.6310 1.3033 32 1 0.9532 -4.3164 -0.2525 33 1 2.5668 -4.5905 -0.9523 34 1 2.1608 -6.0257 1.0511 35 1 3.5148 -4.8968 1.3044 36 1 2.0480 -4.8975 3.2838 37 1 0.6403 -4.5114 2.2625 38 1 4.0225 -3.3996 2.1696 39 1 3.2871 -2.0500 4.6848 40 1 3.5156 -3.8068 4.5114 41 1 7.5233 -2.5965 6.6521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411558727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:32 Heat of formation + Delta-G solvation = -70.797256 kcal Electronic energy + Delta-G solvation = -18508.281910 eV Core-core repulsion = 15808.105084 eV Total energy + Delta-G solvation = -2700.176825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64652 -36.04699 -35.27946 -32.79842 -31.91817 -30.32567 -27.20168 -26.98306 -26.06258 -23.78814 -22.22829 -21.30460 -19.63454 -19.11954 -16.88742 -16.05401 -15.89018 -15.15080 -14.72411 -14.42423 -14.12821 -13.99083 -13.46868 -13.13395 -13.03882 -12.41586 -12.34661 -12.17044 -11.95904 -11.87145 -11.73504 -11.48710 -11.09518 -11.01501 -10.66547 -10.48994 -10.40200 -10.30975 -10.22571 -9.89928 -9.77532 -9.34623 -8.99823 -8.58743 -7.34761 -6.04372 -4.01774 3.27763 3.35631 3.37995 4.06362 4.42545 4.82770 4.98791 5.04048 5.09750 5.15153 5.21533 5.22643 5.28734 5.42347 5.51295 5.62546 5.70212 5.72527 5.80679 5.87859 5.94361 5.97054 5.99146 6.10558 6.12732 6.16503 6.29279 6.34856 6.39722 6.49473 6.66004 6.81175 6.85359 7.05906 7.57591 7.64450 7.95176 8.41937 8.68283 9.04979 9.57961 11.09063 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.006798 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.737231 B = 4117.748830 C = 4761.530604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.096 4.096 5 C 0.106 3.894 6 H 0.049 0.951 7 O -0.369 6.369 8 C 0.064 3.936 9 C -0.157 4.157 10 C -0.154 4.154 11 C 0.053 3.947 12 H 0.077 0.923 13 N -0.662 5.662 14 C 0.164 3.836 15 C -0.513 4.513 16 H 0.079 0.921 17 C 0.068 3.932 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.268 1.268 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.339 0.661 39 H 0.024 0.976 40 H -0.024 1.024 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.464 0.036 -10.755 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.134 4.134 5 C 0.048 3.952 6 H 0.067 0.933 7 O -0.288 6.288 8 C -0.013 4.013 9 C -0.195 4.195 10 C -0.193 4.193 11 C -0.059 4.059 12 H 0.095 0.905 13 N -0.293 5.293 14 C 0.036 3.964 15 C -0.551 4.551 16 H 0.097 0.903 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.705 3.295 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.158 0.842 39 H 0.042 0.958 40 H -0.006 1.006 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.205 0.850 -10.715 17.814 hybrid contribution -0.801 -1.459 1.374 2.158 sum -15.006 -0.609 -9.341 17.687 Atomic orbital electron populations 1.21901 0.96239 1.01222 1.01082 1.21122 0.94889 0.95984 0.99598 1.21821 1.01372 0.96119 1.00965 1.21506 1.03957 0.91339 0.96555 1.22184 0.93918 0.93491 0.85592 0.93277 1.87946 1.68878 1.21909 1.50070 1.22460 0.98941 0.82678 0.97226 1.22161 1.02099 0.99445 0.95750 1.22280 0.99904 0.98493 0.98625 1.22228 0.92962 0.93012 0.97708 0.90516 1.60546 1.01814 1.56466 1.10474 1.20038 0.97573 0.93901 0.84888 1.21070 0.90604 1.48841 0.94611 0.90300 1.24904 0.94832 0.94912 0.98680 1.69902 1.10769 1.50662 1.22658 0.86837 0.81411 0.78477 0.82817 1.20470 1.21187 1.19231 0.93027 0.93335 0.92954 0.90730 0.92990 0.92426 0.93392 0.91373 0.89026 0.94090 0.89387 0.91460 0.90477 0.91469 0.92340 0.84152 0.95778 1.00592 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.97 37.16 0.33 -1.27 16 2 C -0.10 -1.23 2.87 -90.62 -0.26 -1.49 16 3 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 4 C -0.10 -1.44 4.12 -26.73 -0.11 -1.55 16 5 C 0.11 1.57 2.29 -26.69 -0.06 1.51 16 6 H 0.05 0.66 6.38 -51.93 -0.33 0.33 16 7 O -0.37 -5.67 9.76 -35.23 -0.34 -6.02 16 8 C 0.06 0.81 6.84 37.20 0.25 1.06 16 9 C -0.16 -2.11 5.85 -26.59 -0.16 -2.26 16 10 C -0.15 -2.27 5.61 -26.55 -0.15 -2.42 16 11 C 0.05 0.88 2.36 -67.57 -0.16 0.72 16 12 H 0.08 1.31 7.80 -51.93 -0.41 0.90 16 13 N -0.66 -13.66 5.39 -107.84 -0.58 -14.24 16 14 C 0.16 3.98 4.31 -4.98 -0.02 3.96 16 15 C -0.51 -14.77 9.87 -34.44 -0.34 -15.11 16 16 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 19 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.56 6.49 -51.93 -0.34 0.23 16 26 H 0.07 1.01 7.68 -51.93 -0.40 0.61 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.18 6.45 -51.93 -0.33 0.85 16 36 H 0.07 1.08 7.42 -51.93 -0.39 0.70 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.34 7.08 6.45 -39.29 -0.25 6.83 16 39 H 0.02 0.60 7.11 -51.93 -0.37 0.23 16 40 H -0.02 -0.57 6.85 -51.93 -0.36 -0.92 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -30.16 313.21 -7.91 -38.08 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.39 Total: 3.80 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.42 Total: -16.31 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: 0.19 Total: -41.38 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.34 Total: -6.02 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.16 -7.91 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.719 kcal (2) G-P(sol) polarization free energy of solvation -30.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds