Wall clock time and date at job start Sun Mar 29 2020 22:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.53001 * 109.47233 * 119.99916 * 2 1 3 5 5 C 1.53000 * 109.46963 * 65.87575 * 4 2 1 6 6 H 1.09005 * 109.49049 * 305.13698 * 5 4 2 7 7 O 1.42903 * 109.48271 * 65.16300 * 5 4 2 8 8 C 1.42896 * 114.09755 * 181.13936 * 7 5 4 9 9 C 1.53090 * 109.42078 * 298.84388 * 8 7 5 10 10 C 1.53179 * 109.15916 * 57.60780 * 9 8 7 11 11 C 1.53087 * 109.48168 * 185.11379 * 5 4 2 12 12 H 1.08995 * 109.52923 * 62.43539 * 11 5 4 13 13 N 1.46908 * 109.51864 * 302.31319 * 11 5 4 14 14 C 1.46901 * 110.99957 * 155.00234 * 13 11 5 15 15 C 1.50697 * 109.46811 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00560 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99952 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00335 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 120.00073 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47060 * 90.00101 * 19 17 15 21 21 H 1.48493 * 109.47458 * 210.00161 * 19 17 15 22 22 H 1.48506 * 109.47070 * 330.00521 * 19 17 15 23 23 H 1.09007 * 109.47369 * 299.99780 * 1 2 3 24 24 H 1.08995 * 109.47413 * 59.99548 * 1 2 3 25 25 H 1.09001 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47211 * 240.00368 * 2 1 3 27 27 H 1.09004 * 109.46801 * 60.34734 * 3 2 1 28 28 H 1.08995 * 109.47063 * 180.34307 * 3 2 1 29 29 H 1.09001 * 109.47245 * 300.34965 * 3 2 1 30 30 H 1.08996 * 109.46931 * 305.87737 * 4 2 1 31 31 H 1.08994 * 109.46883 * 185.87255 * 4 2 1 32 32 H 1.09001 * 109.48359 * 58.83144 * 8 7 5 33 33 H 1.09007 * 109.48399 * 178.85227 * 8 7 5 34 34 H 1.08994 * 109.52837 * 177.51556 * 9 8 7 35 35 H 1.08997 * 109.52579 * 297.70746 * 9 8 7 36 36 H 1.09000 * 109.54416 * 183.15153 * 10 9 8 37 37 H 1.09003 * 109.54451 * 62.88977 * 10 9 8 38 38 H 1.00908 * 110.99713 * 278.95174 * 13 11 5 39 39 H 1.08995 * 109.47243 * 299.99799 * 14 13 11 40 40 H 1.09003 * 109.47255 * 60.00316 * 14 13 11 41 41 H 0.97001 * 120.00344 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6542 -2.2000 1.1776 6 1 0.5775 -2.2883 1.0317 7 8 2.3354 -2.8179 0.0839 8 6 2.0249 -4.2018 -0.0900 9 6 2.4369 -4.9774 1.1639 10 6 1.7168 -4.3864 2.3799 11 6 2.0511 -2.8951 2.4825 12 1 1.5000 -2.4536 3.3128 13 7 3.4934 -2.7297 2.7077 14 6 3.8179 -2.8287 4.1370 15 6 5.3025 -2.6551 4.3282 16 1 5.9413 -2.4884 3.4735 17 6 5.8456 -2.7101 5.5943 18 7 7.1413 -2.5582 5.7613 19 14 4.7410 -2.9991 7.0727 20 1 4.6269 -4.4576 7.3278 21 1 5.3243 -2.3324 8.2644 22 1 3.3934 -2.4373 6.8012 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6817 1.9545 0.8931 28 1 3.1299 1.4426 -0.0062 29 1 1.6715 1.9582 -0.8868 30 1 1.5933 -0.2717 2.1361 31 1 3.1249 -0.6310 1.3033 32 1 0.9532 -4.3164 -0.2525 33 1 2.5668 -4.5905 -0.9523 34 1 2.1608 -6.0257 1.0511 35 1 3.5148 -4.8968 1.3044 36 1 2.0480 -4.8975 3.2838 37 1 0.6403 -4.5114 2.2625 38 1 4.0225 -3.3996 2.1696 39 1 3.2871 -2.0500 4.6848 40 1 3.5156 -3.8068 4.5114 41 1 7.5233 -2.5965 6.6521 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411558727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:31 Heat of formation + Delta-G solvation = -90.555884 kcal Electronic energy + Delta-G solvation = -18509.138708 eV Core-core repulsion = 15808.105084 eV Total energy + Delta-G solvation = -2701.033623 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.85009 -37.15088 -36.74140 -34.76443 -33.27021 -31.82408 -28.75212 -27.92179 -27.51304 -24.99722 -23.50921 -23.12953 -20.69009 -20.40657 -18.94400 -17.42047 -17.12411 -16.48698 -16.08554 -15.89777 -15.50581 -15.27529 -14.76758 -14.64157 -14.21189 -14.14586 -13.85800 -13.47659 -13.23997 -12.99275 -12.86821 -12.73054 -12.58533 -12.28322 -12.08232 -12.04776 -11.79818 -11.51958 -11.43847 -11.39834 -11.35444 -10.95878 -10.82381 -10.26958 -8.97131 -8.31206 -6.35333 1.31453 1.34065 1.45290 2.32076 2.96106 3.02689 3.54803 3.72846 3.92968 4.00438 4.07312 4.17446 4.19749 4.32171 4.44992 4.50853 4.60363 4.68809 4.75357 4.80925 4.85838 4.89731 4.91542 4.95469 5.02240 5.07827 5.13354 5.18778 5.24683 5.27637 5.34457 5.47029 5.52920 5.63116 5.65715 5.97735 6.48438 6.59748 6.68483 6.79340 7.29685 8.85891 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.006798 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.737231 B = 4117.748830 C = 4761.530604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.095 4.095 5 C 0.113 3.887 6 H 0.077 0.923 7 O -0.390 6.390 8 C 0.061 3.939 9 C -0.155 4.155 10 C -0.150 4.150 11 C 0.046 3.954 12 H 0.075 0.925 13 N -0.670 5.670 14 C 0.179 3.821 15 C -0.526 4.526 16 H 0.033 0.967 17 C 0.008 3.992 18 N -0.948 5.948 19 Si 0.952 3.048 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.250 1.250 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.334 0.666 39 H 0.022 0.978 40 H -0.018 1.018 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 -0.558 -10.907 20.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.133 4.133 5 C 0.055 3.945 6 H 0.094 0.906 7 O -0.309 6.309 8 C -0.016 4.016 9 C -0.193 4.193 10 C -0.189 4.189 11 C -0.065 4.065 12 H 0.093 0.907 13 N -0.301 5.301 14 C 0.050 3.950 15 C -0.564 4.564 16 H 0.051 0.949 17 C -0.190 4.190 18 N -0.589 5.589 19 Si 0.775 3.225 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.174 1.174 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.154 0.846 39 H 0.040 0.960 40 H -0.001 1.001 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.425 0.253 -10.894 20.552 hybrid contribution 0.267 -1.265 1.318 1.846 sum -17.158 -1.012 -9.576 19.676 Atomic orbital electron populations 1.21852 0.94235 1.01802 1.02041 1.21055 0.96465 0.95819 0.97753 1.21817 1.00435 0.96005 1.01964 1.21458 1.01526 0.92385 0.97892 1.22142 0.95122 0.92796 0.84440 0.90580 1.87934 1.69524 1.23527 1.49928 1.22661 1.00709 0.81063 0.97132 1.22157 1.00235 1.01103 0.95763 1.22230 1.01809 0.96415 0.98458 1.22397 0.90061 0.95113 0.98902 0.90699 1.60445 1.04694 1.56801 1.08185 1.19736 0.94278 0.93756 0.87237 1.21340 0.92767 1.48785 0.93510 0.94879 1.25887 0.96404 0.94406 1.02271 1.70061 1.13052 1.51994 1.23774 0.85650 0.79706 0.79018 0.78126 1.19176 1.20561 1.17409 0.92554 0.91926 0.92525 0.91689 0.92725 0.93982 0.91608 0.91427 0.92853 0.91563 0.88019 0.88977 0.93251 0.93130 0.89372 0.84646 0.95968 1.00088 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.97 71.98 0.65 -2.03 16 2 C -0.09 -2.22 2.87 -10.79 -0.03 -2.25 16 3 C -0.14 -3.29 9.19 71.98 0.66 -2.63 16 4 C -0.09 -2.81 4.12 30.59 0.13 -2.68 16 5 C 0.11 3.16 2.29 30.62 0.07 3.23 16 6 H 0.08 1.76 6.38 -2.38 -0.02 1.75 16 7 O -0.39 -11.44 9.76 -148.98 -1.45 -12.90 16 8 C 0.06 1.38 6.84 72.01 0.49 1.87 16 9 C -0.15 -3.87 5.85 30.68 0.18 -3.69 16 10 C -0.15 -4.09 5.61 30.71 0.17 -3.91 16 11 C 0.05 1.49 2.36 45.00 0.11 1.59 16 12 H 0.07 2.43 7.80 -2.39 -0.02 2.42 16 13 N -0.67 -28.18 5.39 -495.11 -2.67 -30.85 16 14 C 0.18 8.73 4.31 85.56 0.37 9.10 16 15 C -0.53 -31.38 9.87 25.60 0.25 -31.13 16 16 H 0.03 2.21 8.06 -2.91 -0.02 2.19 16 17 C 0.01 0.45 5.47 84.65 0.46 0.92 16 18 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 19 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 23 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.02 6.49 -2.39 -0.02 1.00 16 26 H 0.06 1.69 7.68 -2.39 -0.02 1.67 16 27 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 1.97 7.72 -2.39 -0.02 1.95 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.05 1.51 6.45 -2.39 -0.02 1.49 16 36 H 0.05 1.54 7.42 -2.39 -0.02 1.53 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.33 14.49 6.45 -89.69 -0.58 13.91 16 39 H 0.02 1.10 7.11 -2.39 -0.02 1.08 16 40 H -0.02 -0.88 6.85 -2.39 -0.02 -0.90 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -67.15 313.21 1.91 -65.24 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.35 Total: 23.55 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.51 Total: -31.61 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -2.37 Total: -91.02 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -1.45 Total: -12.90 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -67.15 1.91 -65.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.317 kcal (2) G-P(sol) polarization free energy of solvation -67.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds