Wall clock time and date at job start Sun Mar 29 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47045 * 2 1 4 4 C 1.53001 * 109.50464 * 60.08897 * 3 2 1 5 5 C 1.53092 * 109.50675 * 180.21837 * 3 2 1 6 6 N 1.47006 * 109.25990 * 176.78390 * 5 3 2 7 7 C 1.46905 * 111.00462 * 177.60629 * 6 5 3 8 8 H 1.08996 * 109.47316 * 174.10469 * 7 6 5 9 9 C 1.53004 * 109.46661 * 54.11012 * 7 6 5 10 10 C 1.52996 * 109.47128 * 294.11069 * 7 6 5 11 11 C 1.50700 * 109.46857 * 296.02922 * 10 7 6 12 12 H 1.07995 * 120.00183 * 4.85821 * 11 10 7 13 13 C 1.37884 * 119.99776 * 184.86147 * 11 10 7 14 14 N 1.31511 * 120.00009 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00029 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47017 * 359.97438 * 15 13 11 17 17 H 1.48492 * 109.47070 * 119.99755 * 15 13 11 18 18 H 1.48496 * 109.46767 * 239.99941 * 15 13 11 19 19 C 1.47016 * 110.75578 * 301.38529 * 6 5 3 20 20 C 1.53096 * 109.25608 * 58.61146 * 19 6 5 21 21 O 1.43014 * 109.50478 * 300.00447 * 3 2 1 22 22 H 1.08997 * 109.47370 * 59.99929 * 1 2 3 23 23 H 1.09007 * 109.47152 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.46747 * 299.99372 * 1 2 3 25 25 H 1.09007 * 109.46955 * 240.00123 * 2 1 3 26 26 H 1.08997 * 109.47370 * 120.00071 * 2 1 3 27 27 H 1.08996 * 109.47175 * 59.99845 * 4 3 2 28 28 H 1.08998 * 109.47142 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47054 * 299.99998 * 4 3 2 30 30 H 1.09004 * 109.50845 * 296.72538 * 5 3 2 31 31 H 1.09003 * 109.50929 * 56.85131 * 5 3 2 32 32 H 1.09006 * 109.46760 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.46653 * 300.00093 * 9 7 6 34 34 H 1.08998 * 109.47207 * 60.00306 * 9 7 6 35 35 H 1.08999 * 109.47134 * 56.02958 * 10 7 6 36 36 H 1.09003 * 109.47241 * 176.02728 * 10 7 6 37 37 H 0.97000 * 120.00149 * 180.02562 * 14 13 11 38 38 H 1.09007 * 109.50283 * 298.68189 * 19 6 5 39 39 H 1.08990 * 109.54670 * 178.57058 * 19 6 5 40 40 H 1.09002 * 109.51041 * 183.21962 * 20 19 6 41 41 H 1.08997 * 109.54146 * 63.11266 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5322 2.1639 1.2501 5 6 3.5709 1.4435 -0.0055 6 7 4.0547 2.8295 -0.0833 7 6 5.5220 2.8786 -0.0339 8 1 5.8571 3.9027 -0.1981 9 6 6.0996 1.9724 -1.1230 10 6 6.0025 2.3984 1.3370 11 6 5.5140 3.3471 2.4011 12 1 4.8557 4.1616 2.1375 13 6 5.9075 3.1751 3.7114 14 7 6.7087 2.1829 4.0325 15 14 5.3026 4.3514 5.0304 16 1 4.4196 5.3742 4.4143 17 1 4.5427 3.5949 6.0576 18 1 6.4650 5.0207 5.6675 19 6 3.5459 3.4917 -1.2933 20 6 2.0152 3.4702 -1.2749 21 8 1.5636 2.1174 -1.1674 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 1.8968 1.6499 2.1395 28 1 1.8955 3.1915 1.2493 29 1 0.4422 2.1642 1.2519 30 1 3.9385 0.9805 0.9103 31 1 3.9322 0.8830 -0.8678 32 1 7.1884 2.0085 -1.0861 33 1 5.7645 0.9482 -0.9588 34 1 5.7573 2.3146 -2.0997 35 1 5.6086 1.4007 1.5310 36 1 7.0920 2.3677 1.3499 37 1 6.9852 2.0617 4.9543 38 1 3.9067 2.9639 -2.1761 39 1 3.8950 4.5239 -1.3183 40 1 1.6338 3.9090 -2.1969 41 1 1.6527 4.0437 -0.4218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411607604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:27 Heat of formation + Delta-G solvation = -53.242613 kcal Electronic energy + Delta-G solvation = -19102.854790 eV Core-core repulsion = 16403.439192 eV Total energy + Delta-G solvation = -2699.415599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.87354 -36.56446 -34.21110 -32.79533 -30.87267 -29.77748 -27.78709 -27.27716 -25.49030 -23.78228 -23.14564 -21.39509 -19.26544 -18.54290 -16.30125 -16.16437 -15.66142 -14.76933 -14.56395 -14.42958 -14.13275 -13.85212 -13.54031 -13.12516 -12.78247 -12.21918 -12.01872 -11.77328 -11.72908 -11.61812 -11.35382 -11.30634 -11.05117 -10.88042 -10.72937 -10.61862 -10.43796 -10.36424 -9.95755 -9.76484 -9.34202 -9.02419 -8.93792 -8.27674 -7.49190 -5.90110 -3.87825 3.36448 3.44299 3.49438 4.04972 4.44988 4.55482 5.07540 5.16602 5.33913 5.37685 5.46236 5.52190 5.52759 5.63492 5.75832 5.79471 5.87321 5.93216 5.96002 6.00694 6.05749 6.12153 6.18203 6.24071 6.33401 6.37823 6.43964 6.53690 6.57179 6.68827 6.84455 6.96823 7.50728 7.56591 7.65073 7.87001 7.98321 8.11204 8.57562 9.19155 9.74113 11.21881 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.008158 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.020592 B = 3431.401634 C = 3898.195753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.119 3.881 4 C -0.166 4.166 5 C 0.033 3.967 6 N -0.505 5.505 7 C 0.086 3.914 8 H 0.070 0.930 9 C -0.184 4.184 10 C 0.030 3.970 11 C -0.489 4.489 12 H 0.062 0.938 13 C 0.050 3.950 14 N -0.903 5.903 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.014 3.986 20 C 0.064 3.936 21 O -0.382 6.382 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.015 0.985 36 H 0.022 0.978 37 H 0.256 0.744 38 H 0.033 0.967 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -1.449 -9.717 13.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.080 3.920 4 C -0.223 4.223 5 C -0.095 4.095 6 N -0.229 5.229 7 C -0.022 4.022 8 H 0.088 0.912 9 C -0.243 4.243 10 C -0.007 4.007 11 C -0.527 4.527 12 H 0.080 0.920 13 C -0.149 4.149 14 N -0.544 5.544 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.114 4.114 20 C -0.013 4.013 21 O -0.301 6.301 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.040 0.960 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.379 -1.342 -9.288 13.268 hybrid contribution 0.373 0.320 0.281 0.566 sum -9.007 -1.022 -9.007 12.779 Atomic orbital electron populations 1.21721 0.95468 1.00849 1.02339 1.21485 0.96549 0.94227 1.02376 1.21561 0.92619 0.92167 0.85632 1.22266 0.99803 1.02807 0.97414 1.22742 0.93997 0.90765 1.02005 1.62355 1.10477 1.15106 1.34938 1.21953 0.84700 0.98411 0.97141 0.91174 1.22515 1.01543 1.01109 0.99109 1.19192 0.96022 0.96528 0.88921 1.21210 1.27393 1.12387 0.91722 0.91996 1.25011 0.95550 0.95607 0.98727 1.69971 1.35570 1.30816 1.18092 0.86604 0.78470 0.81278 0.82054 1.19782 1.21331 1.21407 1.22770 0.95898 1.00088 0.92690 1.22591 0.93243 0.84103 1.01379 1.87916 1.73090 1.25141 1.43974 0.92205 0.93338 0.92518 0.91807 0.90544 0.91466 0.90706 0.93084 0.88692 0.94958 0.92501 0.92866 0.94163 0.96723 0.95995 0.93386 0.94933 0.90449 0.89569 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.42 37.16 0.35 -1.42 16 2 C -0.11 -1.49 5.21 -26.73 -0.14 -1.63 16 3 C 0.12 1.90 0.79 -90.57 -0.07 1.83 16 4 C -0.17 -2.71 7.82 37.16 0.29 -2.42 16 5 C 0.03 0.60 3.50 -3.72 -0.01 0.58 16 6 N -0.51 -9.53 3.72 -226.34 -0.84 -10.37 16 7 C 0.09 1.74 2.27 -67.71 -0.15 1.59 16 8 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 9 C -0.18 -3.22 8.44 37.16 0.31 -2.91 16 10 C 0.03 0.76 4.35 -27.89 -0.12 0.64 16 11 C -0.49 -13.48 8.82 -34.44 -0.30 -13.78 16 12 H 0.06 1.71 7.72 -52.49 -0.40 1.31 16 13 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 14 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 15 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 16 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C 0.01 0.23 5.38 -3.71 -0.02 0.21 16 20 C 0.06 0.93 6.61 37.21 0.25 1.17 16 21 O -0.38 -6.07 9.61 -35.23 -0.34 -6.41 16 22 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 23 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 24 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.35 6.13 -51.93 -0.32 1.03 16 29 H 0.05 0.74 6.43 -51.93 -0.33 0.41 16 30 H 0.09 1.93 6.29 -51.93 -0.33 1.60 16 31 H 0.03 0.57 6.37 -51.93 -0.33 0.24 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.93 6.38 -51.93 -0.33 0.60 16 34 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 35 H 0.01 0.39 6.33 -51.93 -0.33 0.06 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.03 0.51 6.71 -51.92 -0.35 0.16 16 39 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 40 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.88 6.49 -51.93 -0.34 0.55 16 LS Contribution 306.67 15.07 4.62 4.62 Total: -1.00 -29.42 306.67 -7.64 -37.06 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.07 Total: -0.71 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 0.28 Total: -14.80 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.10 Total: -36.64 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.34 Total: -6.41 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.42 -7.64 -37.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411607604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.180 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds