Wall clock time and date at job start Sun Mar 29 2020 22:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 C 1.53004 * 109.50639 * 304.91007 * 3 2 1 5 5 C 1.53098 * 109.50916 * 184.78243 * 3 2 1 6 6 N 1.47017 * 109.26084 * 183.21340 * 5 3 2 7 7 C 1.46893 * 111.00306 * 182.39238 * 6 5 3 8 8 H 1.09007 * 109.47207 * 302.14124 * 7 6 5 9 9 C 1.53004 * 109.47194 * 62.13877 * 7 6 5 10 10 C 1.53000 * 109.47258 * 182.14088 * 7 6 5 11 11 C 1.50697 * 109.47165 * 176.61916 * 10 7 6 12 12 H 1.08003 * 119.99999 * 4.28736 * 11 10 7 13 13 C 1.37879 * 120.00378 * 184.29041 * 11 10 7 14 14 N 1.31525 * 119.99286 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00375 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47143 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46826 * 120.00107 * 15 13 11 18 18 H 1.48495 * 109.47061 * 240.00094 * 15 13 11 19 19 C 1.47015 * 110.74998 * 58.61513 * 6 5 3 20 20 C 1.53099 * 109.25973 * 301.38680 * 19 6 5 21 21 O 1.43016 * 109.50789 * 64.99817 * 3 2 1 22 22 H 1.09000 * 109.47108 * 300.00327 * 1 2 3 23 23 H 1.08997 * 109.47296 * 60.00037 * 1 2 3 24 24 H 1.09005 * 109.47324 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47374 * 240.00153 * 2 1 3 26 26 H 1.08997 * 109.47296 * 119.99963 * 2 1 3 27 27 H 1.09002 * 109.47101 * 180.08184 * 4 3 2 28 28 H 1.08990 * 109.47138 * 300.09006 * 4 3 2 29 29 H 1.09006 * 109.46971 * 60.08849 * 4 3 2 30 30 H 1.09000 * 109.50713 * 303.15050 * 5 3 2 31 31 H 1.08999 * 109.50553 * 63.24137 * 5 3 2 32 32 H 1.08994 * 109.46916 * 59.99791 * 9 7 6 33 33 H 1.08996 * 109.46965 * 179.97438 * 9 7 6 34 34 H 1.09000 * 109.46664 * 300.00281 * 9 7 6 35 35 H 1.09000 * 109.46584 * 296.61869 * 10 7 6 36 36 H 1.09000 * 109.46997 * 56.61555 * 10 7 6 37 37 H 0.97000 * 119.99477 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.50960 * 61.32045 * 19 6 5 39 39 H 1.09002 * 109.50863 * 181.45175 * 19 6 5 40 40 H 1.09004 * 109.50471 * 296.90949 * 20 19 6 41 41 H 1.09003 * 109.50987 * 176.78360 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4321 2.1993 -1.1827 5 6 3.5662 1.4451 -0.1203 6 7 4.0564 2.8290 -0.0423 7 6 5.5148 2.8812 -0.2107 8 1 5.9910 2.2656 0.5525 9 6 5.8873 2.3530 -1.5975 10 6 5.9929 4.3278 -0.0706 11 6 7.4966 4.3708 -0.1605 12 1 8.0509 3.4684 -0.3723 13 6 8.1647 5.5621 0.0277 14 7 7.4896 6.6609 0.2862 15 14 10.0286 5.6153 -0.0831 16 1 10.5457 4.2556 -0.3817 17 1 10.4337 6.5473 -1.1659 18 1 10.5881 6.0854 1.2096 19 6 3.6495 3.4551 1.2241 20 6 2.1225 3.4323 1.3309 21 8 1.6620 2.0827 1.2217 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.7970 3.2264 -1.1830 28 1 1.7205 1.7109 -2.1134 29 1 0.3457 2.1997 -1.0941 30 1 3.9964 0.8602 0.6926 31 1 3.8567 1.0088 -1.0760 32 1 5.4111 2.9685 -2.3607 33 1 6.9693 2.3922 -1.7226 34 1 5.5466 1.3224 -1.6973 35 1 5.5636 4.9313 -0.8703 36 1 5.6751 4.7236 0.8940 37 1 7.9596 7.4991 0.4183 38 1 4.0810 2.9024 2.0586 39 1 4.0008 4.4866 1.2495 40 1 1.6924 4.0298 0.5271 41 1 1.8187 3.8437 2.2936 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411607605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:29 Heat of formation + Delta-G solvation = -55.423514 kcal Electronic energy + Delta-G solvation = -18657.425592 eV Core-core repulsion = 15957.915423 eV Total energy + Delta-G solvation = -2699.510170 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.91948 -36.52705 -34.35893 -33.02701 -31.00864 -29.99279 -28.22847 -26.81009 -25.69309 -24.08847 -22.63387 -21.57871 -19.12046 -18.95976 -16.72529 -16.06520 -15.79867 -14.78156 -14.67701 -14.51395 -14.27580 -13.84653 -13.68300 -13.18817 -12.94615 -12.22671 -12.11952 -11.87131 -11.80051 -11.58512 -11.48373 -11.25515 -11.11604 -10.91309 -10.83424 -10.74566 -10.62893 -10.32514 -10.04083 -9.83227 -9.37030 -9.07191 -9.01510 -8.35204 -7.71884 -6.01718 -4.03061 3.29697 3.37471 3.40994 3.94035 4.30194 4.49462 4.90343 4.97712 5.14793 5.29586 5.34291 5.42621 5.52824 5.58555 5.63403 5.72590 5.75756 5.82714 5.91798 5.99031 6.01392 6.10438 6.14620 6.18131 6.25234 6.31687 6.35559 6.42510 6.56772 6.67987 6.89676 7.08304 7.45786 7.49640 7.57329 7.77641 7.84749 8.04582 8.42204 9.03021 9.60369 11.09804 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047689 B = 0.005371 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.002235 B = 5211.550787 C = 5506.656971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.119 3.881 4 C -0.168 4.168 5 C 0.028 3.972 6 N -0.529 5.529 7 C 0.084 3.916 8 H 0.027 0.973 9 C -0.129 4.129 10 C 0.030 3.970 11 C -0.516 4.516 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.890 3.110 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.016 3.984 20 C 0.063 3.937 21 O -0.381 6.381 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.022 0.978 36 H 0.022 0.978 37 H 0.259 0.741 38 H 0.034 0.966 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.937 -10.277 -0.869 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.079 3.921 4 C -0.225 4.225 5 C -0.100 4.100 6 N -0.254 5.254 7 C -0.023 4.023 8 H 0.045 0.955 9 C -0.187 4.187 10 C -0.007 4.007 11 C -0.555 4.555 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.112 4.112 20 C -0.014 4.014 21 O -0.300 6.300 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.100 0.900 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.224 -9.918 -1.081 15.778 hybrid contribution 1.715 -0.136 0.481 1.787 sum -10.508 -10.054 -0.600 14.555 Atomic orbital electron populations 1.21759 0.95349 1.01029 1.02440 1.21478 0.96650 0.94193 1.02326 1.21522 0.92852 0.92634 0.85076 1.22306 1.00282 1.02382 0.97566 1.22751 0.94599 0.91267 1.01400 1.62322 1.14703 1.15243 1.33156 1.21858 0.83544 1.00899 0.95952 0.95520 1.21745 1.01891 0.98014 0.97012 1.19211 0.95438 0.88497 0.97577 1.21243 0.91829 0.94339 1.48101 0.92568 1.24990 0.98223 0.95770 0.95354 1.69979 1.35261 0.99243 1.48860 0.86562 0.85948 0.78042 0.77615 1.19783 1.21012 1.21077 1.22817 0.95379 1.02130 0.90874 1.22696 0.93542 0.83533 1.01653 1.87938 1.76908 1.26666 1.38481 0.92062 0.92478 0.93213 0.90848 0.91530 0.90753 0.92113 0.92472 0.94979 0.89991 0.92676 0.91523 0.95043 0.96012 0.95974 0.93082 0.94784 0.88239 0.92291 0.89081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.32 37.15 0.35 -1.17 16 2 C -0.11 -1.24 5.23 -26.73 -0.14 -1.38 16 3 C 0.12 1.65 0.80 -90.57 -0.07 1.57 16 4 C -0.17 -2.20 7.68 37.16 0.29 -1.91 16 5 C 0.03 0.45 4.08 -3.71 -0.02 0.43 16 6 N -0.53 -9.71 3.96 -226.33 -0.90 -10.60 16 7 C 0.08 1.78 2.12 -67.71 -0.14 1.63 16 8 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 9 C -0.13 -2.47 8.82 37.16 0.33 -2.14 16 10 C 0.03 0.76 4.16 -27.88 -0.12 0.65 16 11 C -0.52 -14.31 8.47 -34.44 -0.29 -14.60 16 12 H 0.06 1.52 6.79 -52.48 -0.36 1.17 16 13 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 15 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.02 0.29 5.20 -3.71 -0.02 0.27 16 20 C 0.06 0.94 6.61 37.21 0.25 1.18 16 21 O -0.38 -5.83 9.82 -35.23 -0.35 -6.18 16 22 H 0.06 0.68 7.82 -51.93 -0.41 0.28 16 23 H 0.06 0.55 6.35 -51.93 -0.33 0.22 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 1.10 6.13 -51.93 -0.32 0.79 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.22 6.24 -51.93 -0.32 0.90 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.34 6.75 -51.93 -0.35 0.99 16 34 H 0.03 0.51 6.40 -51.93 -0.33 0.18 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.60 6.08 -51.93 -0.32 0.28 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.94 6.01 -51.93 -0.31 1.63 16 40 H 0.06 0.87 6.49 -51.93 -0.34 0.53 16 41 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 307.03 15.07 4.63 4.63 Total: -1.00 -29.33 307.03 -7.67 -36.99 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.08 Total: -1.59 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 0.31 Total: -13.93 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: -0.16 Total: -36.41 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.35 Total: -6.18 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.33 -7.67 -36.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411607605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.431 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds