Wall clock time and date at job start Sun Mar 29 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.52996 * 109.54467 * 305.11112 * 3 2 1 5 5 C 1.53096 * 109.50421 * 184.99837 * 3 2 1 6 6 N 1.47021 * 109.25538 * 183.21638 * 5 3 2 7 7 C 1.46904 * 110.99957 * 182.38978 * 6 5 3 8 8 H 1.09002 * 109.46803 * 55.40118 * 7 6 5 9 9 C 1.52995 * 109.47566 * 295.40390 * 7 6 5 10 10 C 1.52994 * 109.47050 * 175.39761 * 7 6 5 11 11 C 1.50698 * 109.47803 * 295.38168 * 10 7 6 12 12 H 1.08007 * 119.99288 * 4.87160 * 11 10 7 13 13 C 1.37877 * 120.00466 * 184.87015 * 11 10 7 14 14 N 1.31511 * 119.99676 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47099 * 59.99896 * 15 13 11 17 17 H 1.48501 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47209 * 300.00206 * 15 13 11 19 19 C 1.47020 * 110.75000 * 58.62313 * 6 5 3 20 20 C 1.53101 * 109.25454 * 301.37803 * 19 6 5 21 21 O 1.43013 * 109.25666 * 56.85424 * 20 19 6 22 22 H 1.09009 * 109.47154 * 59.99828 * 1 2 3 23 23 H 1.08999 * 109.47453 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47378 * 300.00139 * 1 2 3 25 25 H 1.09004 * 109.46837 * 240.00400 * 2 1 3 26 26 H 1.08996 * 109.46871 * 120.00108 * 2 1 3 27 27 H 1.09003 * 109.47135 * 299.88823 * 4 3 2 28 28 H 1.09003 * 109.47242 * 59.88829 * 4 3 2 29 29 H 1.08999 * 109.46911 * 179.89366 * 4 3 2 30 30 H 1.08998 * 109.50724 * 63.28678 * 5 3 2 31 31 H 1.09000 * 109.51003 * 303.15289 * 5 3 2 32 32 H 1.08993 * 109.47358 * 179.97438 * 9 7 6 33 33 H 1.09003 * 109.47274 * 300.00010 * 9 7 6 34 34 H 1.09003 * 109.47342 * 59.99820 * 9 7 6 35 35 H 1.09001 * 109.46808 * 55.38310 * 10 7 6 36 36 H 1.09002 * 109.47434 * 175.37933 * 10 7 6 37 37 H 0.97002 * 119.99899 * 179.97438 * 14 13 11 38 38 H 1.08990 * 109.50956 * 61.31565 * 19 6 5 39 39 H 1.09002 * 109.50232 * 181.45283 * 19 6 5 40 40 H 1.08998 * 109.50343 * 176.78657 * 20 19 6 41 41 H 1.09000 * 109.51074 * 296.91973 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4288 2.2015 -1.1795 5 6 3.5658 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0477 7 6 5.5141 2.8814 -0.2211 8 1 5.7859 2.3974 -1.1592 9 6 6.1926 2.1557 0.9424 10 6 5.9722 4.3408 -0.2487 11 6 5.3937 5.0263 -1.4597 12 1 4.6999 4.4996 -2.0983 13 6 5.7499 6.3257 -1.7524 14 7 6.5951 6.9667 -0.9750 15 14 5.0322 7.1755 -3.2531 16 1 3.5530 7.2276 -3.1323 17 1 5.5708 8.5563 -3.3449 18 1 5.4026 6.4179 -4.4754 19 6 3.6540 3.4534 1.2211 20 6 2.1273 3.4305 1.3333 21 8 1.6665 2.0811 1.2240 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.7170 1.7166 -2.1122 28 1 0.3425 2.1991 -1.0893 29 1 1.7914 3.2294 -1.1772 30 1 3.8528 1.0108 -1.0833 31 1 3.9989 0.8592 0.6849 32 1 7.2742 2.1942 0.8134 33 1 5.9207 2.6395 1.8805 34 1 5.8662 1.1158 0.9620 35 1 5.6288 4.8465 0.6538 36 1 7.0606 4.3792 -0.2948 37 1 6.8460 7.8808 -1.1811 38 1 4.0884 2.8995 2.0532 39 1 4.0053 4.4849 1.2465 40 1 1.8271 3.8406 2.2976 41 1 1.6943 4.0290 0.5318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411607607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:33 Heat of formation + Delta-G solvation = -52.556654 kcal Electronic energy + Delta-G solvation = -18967.923161 eV Core-core repulsion = 16268.537308 eV Total energy + Delta-G solvation = -2699.385853 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89565 -36.63908 -34.24755 -32.79972 -30.81791 -29.78329 -28.09300 -27.19839 -25.44603 -23.81847 -22.99501 -21.70536 -19.20700 -18.50647 -16.23585 -15.95864 -15.90294 -14.88397 -14.58414 -14.44111 -14.26278 -13.96074 -13.56925 -13.08991 -12.73141 -12.25850 -11.99637 -11.94766 -11.78047 -11.66475 -11.42042 -11.19825 -11.07598 -10.90033 -10.82712 -10.63474 -10.51716 -10.39990 -9.93060 -9.80852 -9.33613 -9.04445 -8.95043 -8.27633 -7.49545 -5.90771 -3.89030 3.39107 3.43176 3.46511 4.02906 4.44087 4.54697 4.98742 5.06027 5.23466 5.36409 5.45395 5.51458 5.60063 5.65070 5.71558 5.78582 5.82384 5.86536 5.94405 5.95787 5.99245 6.04916 6.09109 6.19009 6.26204 6.33042 6.37266 6.47203 6.58734 6.70587 6.73756 6.95123 7.50386 7.55255 7.65520 7.86549 7.97736 8.10524 8.56247 9.17661 9.73087 11.21073 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.007198 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.674856 B = 3888.987923 C = 4364.150708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.120 3.880 4 C -0.170 4.170 5 C 0.028 3.972 6 N -0.505 5.505 7 C 0.086 3.914 8 H 0.070 0.930 9 C -0.184 4.184 10 C 0.029 3.971 11 C -0.493 4.493 12 H 0.061 0.939 13 C 0.051 3.949 14 N -0.904 5.904 15 Si 0.890 3.110 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.279 1.279 19 C 0.018 3.982 20 C 0.062 3.938 21 O -0.382 6.382 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.016 0.984 36 H 0.022 0.978 37 H 0.258 0.742 38 H 0.032 0.968 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 -11.558 3.131 14.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.146 4.146 3 C 0.080 3.920 4 C -0.227 4.227 5 C -0.101 4.101 6 N -0.229 5.229 7 C -0.022 4.022 8 H 0.089 0.911 9 C -0.243 4.243 10 C -0.008 4.008 11 C -0.531 4.531 12 H 0.079 0.921 13 C -0.148 4.148 14 N -0.544 5.544 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.110 4.110 20 C -0.015 4.015 21 O -0.302 6.302 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.071 -11.203 2.894 14.703 hybrid contribution 0.336 0.277 -0.324 0.543 sum -8.734 -10.926 2.570 14.222 Atomic orbital electron populations 1.21761 0.95415 1.00927 1.02481 1.21471 0.96616 0.94305 1.02164 1.21497 0.92890 0.92495 0.85089 1.22322 1.00100 1.02814 0.97475 1.22746 0.94725 0.91651 1.00985 1.62367 1.13530 1.14251 1.32747 1.21943 0.84398 1.00097 0.95755 0.91138 1.22513 1.01455 0.99457 1.00884 1.19219 0.96264 0.87806 0.97493 1.21149 1.25190 0.97319 1.09473 0.92065 1.25012 0.95464 0.97706 0.96650 1.69953 1.34386 1.11754 1.38332 0.86699 0.79420 0.78418 0.83648 1.20384 1.21648 1.20501 1.22786 0.95374 1.02049 0.90804 1.22682 0.93752 0.83452 1.01587 1.87918 1.77173 1.26801 1.38267 0.92433 0.93302 0.92095 0.90911 0.91667 0.92169 0.92646 0.90289 0.90617 0.94830 0.92508 0.92943 0.94091 0.96599 0.95966 0.93240 0.94992 0.88258 0.89348 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.32 37.16 0.35 -1.27 16 2 C -0.11 -1.29 5.24 -26.73 -0.14 -1.43 16 3 C 0.12 1.75 0.80 -90.57 -0.07 1.68 16 4 C -0.17 -2.49 7.68 37.16 0.29 -2.21 16 5 C 0.03 0.44 4.00 -3.71 -0.01 0.43 16 6 N -0.51 -9.54 3.78 -226.33 -0.86 -10.39 16 7 C 0.09 1.75 2.31 -67.72 -0.16 1.59 16 8 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 9 C -0.18 -3.23 8.49 37.16 0.32 -2.91 16 10 C 0.03 0.73 4.26 -27.89 -0.12 0.61 16 11 C -0.49 -13.60 8.83 -34.44 -0.30 -13.91 16 12 H 0.06 1.69 7.73 -52.48 -0.41 1.28 16 13 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.87 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C 0.02 0.32 4.87 -3.71 -0.02 0.31 16 20 C 0.06 0.99 6.61 37.21 0.25 1.24 16 21 O -0.38 -6.10 9.83 -35.23 -0.35 -6.45 16 22 H 0.06 0.61 6.35 -51.92 -0.33 0.28 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.72 7.83 -51.93 -0.41 0.31 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.74 6.34 -51.93 -0.33 0.41 16 29 H 0.08 1.36 6.12 -51.93 -0.32 1.04 16 30 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 31 H 0.03 0.54 6.55 -51.93 -0.34 0.20 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 34 H 0.04 0.65 6.57 -51.93 -0.34 0.30 16 35 H 0.02 0.42 6.14 -51.93 -0.32 0.10 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.03 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.10 2.02 6.12 -51.93 -0.32 1.70 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 LS Contribution 306.28 15.07 4.62 4.62 Total: -1.00 -29.31 306.28 -7.65 -36.96 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.05 Total: -0.84 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 0.27 Total: -14.51 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.12 Total: -36.65 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.35 Total: -6.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.31 -7.65 -36.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411607607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.601 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds