Wall clock time and date at job start Sun Mar 29 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 C 1.52996 * 109.54467 * 305.11112 * 3 2 1 5 5 C 1.53096 * 109.50421 * 184.99837 * 3 2 1 6 6 N 1.47021 * 109.25538 * 183.21638 * 5 3 2 7 7 C 1.46904 * 110.99957 * 182.38978 * 6 5 3 8 8 H 1.09002 * 109.46803 * 55.40118 * 7 6 5 9 9 C 1.52995 * 109.47566 * 295.40390 * 7 6 5 10 10 C 1.52994 * 109.47050 * 175.39761 * 7 6 5 11 11 C 1.50698 * 109.47803 * 295.38168 * 10 7 6 12 12 H 1.08007 * 119.99288 * 4.87160 * 11 10 7 13 13 C 1.37877 * 120.00466 * 184.87015 * 11 10 7 14 14 N 1.31511 * 119.99676 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00049 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47099 * 59.99896 * 15 13 11 17 17 H 1.48501 * 109.47083 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47209 * 300.00206 * 15 13 11 19 19 C 1.47020 * 110.75000 * 58.62313 * 6 5 3 20 20 C 1.53101 * 109.25454 * 301.37803 * 19 6 5 21 21 O 1.43013 * 109.25666 * 56.85424 * 20 19 6 22 22 H 1.09009 * 109.47154 * 59.99828 * 1 2 3 23 23 H 1.08999 * 109.47453 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47378 * 300.00139 * 1 2 3 25 25 H 1.09004 * 109.46837 * 240.00400 * 2 1 3 26 26 H 1.08996 * 109.46871 * 120.00108 * 2 1 3 27 27 H 1.09003 * 109.47135 * 299.88823 * 4 3 2 28 28 H 1.09003 * 109.47242 * 59.88829 * 4 3 2 29 29 H 1.08999 * 109.46911 * 179.89366 * 4 3 2 30 30 H 1.08998 * 109.50724 * 63.28678 * 5 3 2 31 31 H 1.09000 * 109.51003 * 303.15289 * 5 3 2 32 32 H 1.08993 * 109.47358 * 179.97438 * 9 7 6 33 33 H 1.09003 * 109.47274 * 300.00010 * 9 7 6 34 34 H 1.09003 * 109.47342 * 59.99820 * 9 7 6 35 35 H 1.09001 * 109.46808 * 55.38310 * 10 7 6 36 36 H 1.09002 * 109.47434 * 175.37933 * 10 7 6 37 37 H 0.97002 * 119.99899 * 179.97438 * 14 13 11 38 38 H 1.08990 * 109.50956 * 61.31565 * 19 6 5 39 39 H 1.09002 * 109.50232 * 181.45283 * 19 6 5 40 40 H 1.08998 * 109.50343 * 176.78657 * 20 19 6 41 41 H 1.09000 * 109.51074 * 296.91973 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4288 2.2015 -1.1795 5 6 3.5658 1.4452 -0.1257 6 7 4.0562 2.8290 -0.0477 7 6 5.5141 2.8814 -0.2211 8 1 5.7859 2.3974 -1.1592 9 6 6.1926 2.1557 0.9424 10 6 5.9722 4.3408 -0.2487 11 6 5.3937 5.0263 -1.4597 12 1 4.6999 4.4996 -2.0983 13 6 5.7499 6.3257 -1.7524 14 7 6.5951 6.9667 -0.9750 15 14 5.0322 7.1755 -3.2531 16 1 3.5530 7.2276 -3.1323 17 1 5.5708 8.5563 -3.3449 18 1 5.4026 6.4179 -4.4754 19 6 3.6540 3.4534 1.2211 20 6 2.1273 3.4305 1.3333 21 8 1.6665 2.0811 1.2240 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.7170 1.7166 -2.1122 28 1 0.3425 2.1991 -1.0893 29 1 1.7914 3.2294 -1.1772 30 1 3.8528 1.0108 -1.0833 31 1 3.9989 0.8592 0.6849 32 1 7.2742 2.1942 0.8134 33 1 5.9207 2.6395 1.8805 34 1 5.8662 1.1158 0.9620 35 1 5.6288 4.8465 0.6538 36 1 7.0606 4.3792 -0.2948 37 1 6.8460 7.8808 -1.1811 38 1 4.0884 2.8995 2.0532 39 1 4.0053 4.4849 1.2465 40 1 1.8271 3.8406 2.2976 41 1 1.6943 4.0290 0.5318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411607607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:32 Heat of formation + Delta-G solvation = -70.553011 kcal Electronic energy + Delta-G solvation = -18968.703542 eV Core-core repulsion = 16268.537308 eV Total energy + Delta-G solvation = -2700.166234 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20529 -38.11870 -35.36402 -34.86600 -32.44568 -30.94494 -29.59153 -28.83245 -26.75789 -25.25480 -24.71411 -23.03641 -20.59125 -19.92961 -18.35348 -17.32595 -17.18402 -16.54981 -16.13388 -15.90717 -15.54166 -15.25224 -14.79731 -14.56413 -14.08604 -13.95035 -13.58761 -13.27708 -13.20156 -12.97232 -12.81374 -12.67816 -12.65884 -12.43484 -12.29520 -12.03920 -11.94936 -11.78813 -11.56037 -11.22144 -11.10048 -10.91512 -10.47623 -10.38992 -8.96178 -8.10290 -6.15216 1.41745 1.43746 1.51354 2.46824 2.82737 3.04234 3.25615 3.82797 3.98669 4.04769 4.15641 4.21375 4.27646 4.38847 4.47295 4.48953 4.55567 4.66651 4.69422 4.72633 4.79485 4.90227 4.91015 4.99080 5.10078 5.14603 5.16065 5.18413 5.22591 5.27692 5.43838 5.49095 5.60028 5.69671 5.89194 6.26148 6.29803 6.38917 6.48316 6.98797 7.50910 9.01498 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026873 B = 0.007198 C = 0.006414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.674856 B = 3888.987923 C = 4364.150708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C 0.117 3.883 4 C -0.165 4.165 5 C 0.029 3.971 6 N -0.521 5.521 7 C 0.093 3.907 8 H 0.066 0.934 9 C -0.174 4.174 10 C 0.036 3.964 11 C -0.500 4.500 12 H 0.059 0.941 13 C -0.003 4.003 14 N -0.939 5.939 15 Si 0.954 3.046 16 H -0.272 1.272 17 H -0.288 1.288 18 H -0.271 1.271 19 C 0.023 3.977 20 C 0.068 3.932 21 O -0.385 6.385 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.064 0.936 35 H -0.003 1.003 36 H -0.007 1.007 37 H 0.259 0.741 38 H 0.037 0.963 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 -13.197 2.581 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.077 3.923 4 C -0.222 4.222 5 C -0.099 4.099 6 N -0.245 5.245 7 C -0.015 4.015 8 H 0.084 0.916 9 C -0.232 4.232 10 C -0.001 4.001 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.582 5.582 15 Si 0.781 3.219 16 H -0.197 1.197 17 H -0.214 1.214 18 H -0.196 1.196 19 C -0.105 4.105 20 C -0.009 4.009 21 O -0.304 6.304 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.532 -12.862 2.342 16.789 hybrid contribution 0.793 0.767 -0.141 1.112 sum -9.739 -12.095 2.201 15.684 Atomic orbital electron populations 1.21733 0.94478 1.02080 1.01979 1.21494 0.97385 0.92171 1.03126 1.21689 0.91888 0.94126 0.84570 1.22269 1.00882 1.01051 0.98026 1.22832 0.95799 0.89727 1.01543 1.62265 1.12364 1.16501 1.33374 1.21649 0.86000 0.96962 0.96860 0.91592 1.22374 1.01277 1.00306 0.99291 1.19063 0.94256 0.90972 0.95821 1.21446 1.24761 0.97607 1.10003 0.92288 1.25833 0.95903 0.98581 0.99609 1.70084 1.35833 1.12056 1.40180 0.85660 0.78796 0.77281 0.80211 1.19701 1.21383 1.19571 1.22690 0.96951 1.00184 0.90709 1.22635 0.91966 0.83791 1.02468 1.87929 1.77004 1.26469 1.39006 0.92240 0.91379 0.93263 0.89216 0.91448 0.91268 0.91328 0.93256 0.89887 0.94315 0.92356 0.93278 0.91712 0.98517 0.98829 0.93275 0.94482 0.91406 0.87187 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.32 71.98 0.67 -2.04 16 2 C -0.10 -2.17 5.24 30.59 0.16 -2.01 16 3 C 0.12 3.16 0.80 -10.76 -0.01 3.16 16 4 C -0.16 -4.56 7.68 71.98 0.55 -4.00 16 5 C 0.03 0.88 4.00 86.31 0.35 1.23 16 6 N -0.52 -19.47 3.78 -869.96 -3.29 -22.76 16 7 C 0.09 3.81 2.31 44.91 0.10 3.91 16 8 H 0.07 2.73 8.13 -2.39 -0.02 2.71 16 9 C -0.17 -5.94 8.49 71.98 0.61 -5.33 16 10 C 0.04 1.86 4.26 29.85 0.13 1.99 16 11 C -0.50 -28.11 8.83 25.60 0.23 -27.88 16 12 H 0.06 3.28 7.73 -2.91 -0.02 3.26 16 13 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 14 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 15 Si 0.95 45.23 29.54 68.60 2.03 47.26 16 16 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 19 C 0.02 0.83 4.87 86.31 0.42 1.25 16 20 C 0.07 2.12 6.61 72.02 0.48 2.60 16 21 O -0.38 -11.56 9.83 -148.98 -1.46 -13.03 16 22 H 0.06 1.08 6.35 -2.38 -0.02 1.06 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 1.03 7.83 -2.39 -0.02 1.02 16 25 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 1.69 6.34 -2.39 -0.02 1.67 16 29 H 0.05 1.66 6.12 -2.39 -0.01 1.64 16 30 H 0.08 2.38 8.13 -2.39 -0.02 2.36 16 31 H 0.04 1.14 6.55 -2.39 -0.02 1.12 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.70 6.44 -2.39 -0.02 1.68 16 34 H 0.06 1.90 6.57 -2.39 -0.02 1.89 16 35 H 0.00 -0.19 6.14 -2.39 -0.01 -0.20 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.04 1.29 6.43 -2.39 -0.02 1.27 16 39 H 0.07 2.87 6.12 -2.39 -0.01 2.85 16 40 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.05 1.72 6.49 -2.39 -0.02 1.70 16 Total: -1.00 -62.97 306.28 2.69 -60.29 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.98 Total: 12.21 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: 4.15 Total: -26.84 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -3.01 Total: -79.88 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -1.46 Total: -13.03 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -62.97 2.69 -60.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411607607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -62.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds