Wall clock time and date at job start Sun Mar 29 2020 22:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 C 1.52995 * 109.47587 * 120.00074 * 2 1 3 5 5 C 1.52998 * 109.47546 * 173.38328 * 4 2 1 6 6 C 1.53000 * 109.91086 * 183.15330 * 5 4 2 7 7 O 1.42894 * 109.47379 * 185.39971 * 6 5 4 8 8 C 1.53994 * 109.91368 * 304.25342 * 5 4 2 9 9 C 1.54606 * 105.13850 * 120.77286 * 8 5 4 10 10 C 1.54936 * 102.91827 * 21.95781 * 9 8 5 11 11 N 1.47898 * 110.08035 * 61.93890 * 5 4 2 12 12 C 1.46907 * 110.99930 * 94.71826 * 11 5 4 13 13 C 1.50694 * 109.47281 * 170.00018 * 12 11 5 14 14 H 1.08003 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00012 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00006 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46942 * 120.00293 * 17 15 13 20 20 H 1.48506 * 109.47132 * 239.99899 * 17 15 13 21 21 H 1.08999 * 109.47182 * 299.99730 * 1 2 3 22 22 H 1.08994 * 109.47748 * 59.99890 * 1 2 3 23 23 H 1.09007 * 109.46766 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47182 * 240.00270 * 2 1 3 25 25 H 1.08997 * 109.47368 * 190.22114 * 3 2 1 26 26 H 1.09006 * 109.47158 * 310.22209 * 3 2 1 27 27 H 1.08998 * 109.47054 * 70.21732 * 3 2 1 28 28 H 1.08994 * 109.46868 * 53.37980 * 4 2 1 29 29 H 1.08999 * 109.46828 * 293.38130 * 4 2 1 30 30 H 1.09003 * 109.47004 * 65.39731 * 6 5 4 31 31 H 1.09005 * 109.46362 * 305.40350 * 6 5 4 32 32 H 0.96692 * 114.00435 * 179.97438 * 7 6 5 33 33 H 1.09001 * 110.31180 * 239.68619 * 8 5 4 34 34 H 1.08999 * 110.31216 * 1.76358 * 8 5 4 35 35 H 1.08998 * 110.72273 * 140.31367 * 9 8 5 36 36 H 1.08993 * 110.72661 * 263.41905 * 9 8 5 37 37 H 1.09004 * 110.66811 * 81.02340 * 10 9 8 38 38 H 1.09000 * 110.66839 * 203.97927 * 10 9 8 39 39 H 1.09004 * 109.46793 * 289.99680 * 12 11 5 40 40 H 1.08998 * 109.47270 * 49.99352 * 12 11 5 41 41 H 0.96997 * 120.00034 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5610 -0.8668 1.1688 6 6 4.0734 -1.6558 2.3754 7 8 5.5020 -1.6786 2.3579 8 6 3.9507 -1.5891 -0.1342 9 6 4.8663 -0.5969 -0.8875 10 6 5.3801 0.3281 0.2443 11 7 4.1976 0.4677 1.1322 12 6 4.5982 0.8970 2.4788 13 6 5.4542 2.1331 2.3780 14 1 5.6787 2.5572 1.4104 15 6 5.9510 2.7227 3.5212 16 7 5.6772 2.2066 4.6994 17 14 7.0128 4.2545 3.3962 18 1 7.1706 4.6324 1.9688 19 1 6.3637 5.3682 4.1337 20 1 8.3475 3.9812 3.9870 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1145 1.4480 -0.1823 26 1 1.5353 2.0063 -0.7847 27 1 1.8331 1.9010 0.9670 28 1 1.5833 -1.7089 1.3103 29 1 1.7767 -0.1436 2.1352 30 1 3.6931 -2.6763 2.3302 31 1 3.7287 -1.1800 3.2935 32 1 5.8968 -2.1627 3.0959 33 1 4.4922 -2.5081 0.0900 34 1 3.0617 -1.8091 -0.7253 35 1 5.6951 -1.1217 -1.3628 36 1 4.2973 -0.0301 -1.6243 37 1 6.2082 -0.1394 0.7771 38 1 5.6799 1.2963 -0.1565 39 1 3.7090 1.1181 3.0692 40 1 5.1653 0.1005 2.9604 41 1 6.0270 2.6211 5.5036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411616360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:30 Heat of formation + Delta-G solvation = -45.291793 kcal Electronic energy + Delta-G solvation = -19431.841845 eV Core-core repulsion = 16732.771020 eV Total energy + Delta-G solvation = -2699.070825 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68885 -35.80062 -34.71129 -32.94088 -30.81349 -30.47234 -26.58113 -26.02431 -25.32042 -24.26637 -22.29269 -20.40822 -19.59770 -17.91419 -16.91717 -16.20403 -15.24285 -15.08345 -14.57561 -14.13693 -13.92941 -13.41654 -13.07433 -12.54903 -12.48138 -12.16836 -11.92872 -11.68751 -11.56792 -11.38587 -10.94305 -10.88610 -10.55399 -10.54615 -10.31953 -10.25133 -10.11551 -10.04502 -9.94897 -9.72121 -9.66864 -9.33283 -8.88693 -8.33065 -6.85887 -5.93896 -3.91398 3.35029 3.42451 3.47249 4.49709 4.64241 4.95863 5.23407 5.41690 5.45767 5.48758 5.49874 5.59145 5.63145 5.79738 5.85736 5.99718 6.06411 6.12112 6.15042 6.19580 6.28998 6.36357 6.43583 6.50940 6.60933 6.69455 6.72499 6.79120 6.89059 7.03894 7.08040 7.42549 7.52493 7.78680 7.88418 8.12144 8.18907 8.39234 8.69905 9.16670 9.70747 11.17769 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.008498 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.540737 B = 3294.069169 C = 3617.990173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.089 4.089 5 C 0.093 3.907 6 C 0.063 3.937 7 O -0.551 6.551 8 C -0.116 4.116 9 C -0.125 4.125 10 C 0.056 3.944 11 N -0.489 5.489 12 C 0.166 3.834 13 C -0.500 4.500 14 H 0.059 0.941 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.287 1.287 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.102 0.898 26 H 0.021 0.979 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.051 0.949 32 H 0.367 0.633 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.034 0.966 41 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -8.336 -7.577 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.201 4.201 4 C -0.127 4.127 5 C 0.002 3.998 6 C -0.016 4.016 7 O -0.356 6.356 8 C -0.154 4.154 9 C -0.163 4.163 10 C -0.072 4.072 11 N -0.213 5.213 12 C 0.041 3.959 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.213 1.213 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.081 0.919 25 H 0.121 0.879 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.213 0.787 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.037 0.963 40 H 0.052 0.948 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.081 -7.540 -8.113 12.636 hybrid contribution 1.114 -0.070 1.146 1.600 sum -4.967 -7.610 -6.967 11.451 Atomic orbital electron populations 1.21897 0.96810 1.00496 1.01242 1.20984 0.93593 0.98163 0.97417 1.22095 1.04723 0.93323 0.99929 1.21470 0.93298 0.99029 0.98862 1.21867 0.94587 0.90640 0.92673 1.22671 0.81659 0.97434 0.99819 1.86644 1.19294 1.77931 1.51713 1.22440 0.98988 0.98145 0.95792 1.22508 0.98258 0.97459 0.98107 1.22933 0.93877 0.97854 0.92571 1.65105 1.22877 1.19196 1.14073 1.20227 0.95285 0.96172 0.84256 1.21282 1.29523 1.10357 0.92691 0.92268 1.24931 0.96785 0.97458 0.95427 1.69962 1.46157 1.40609 0.97369 0.86544 0.80134 0.83312 0.78013 1.19815 1.21250 1.21297 0.93036 0.93332 0.93706 0.91877 0.87940 0.96026 0.93307 0.93089 0.91759 0.95266 0.93066 0.78696 0.92260 0.91861 0.92602 0.91969 0.92728 0.91408 0.96337 0.94829 0.93333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.17 37.16 0.34 -1.55 16 2 C -0.08 -1.25 2.70 -90.62 -0.24 -1.49 16 3 C -0.14 -2.49 8.23 37.16 0.31 -2.18 16 4 C -0.09 -1.41 4.04 -26.73 -0.11 -1.52 16 5 C 0.09 1.64 0.53 -130.53 -0.07 1.57 16 6 C 0.06 1.11 4.87 37.16 0.18 1.29 16 7 O -0.55 -10.17 9.30 -35.23 -0.33 -10.50 16 8 C -0.12 -1.80 5.43 -25.37 -0.14 -1.94 16 9 C -0.13 -2.03 6.78 -24.87 -0.17 -2.20 16 10 C 0.06 1.12 4.74 -1.90 -0.01 1.11 16 11 N -0.49 -10.20 1.72 -216.42 -0.37 -10.57 16 12 C 0.17 4.23 3.72 -4.97 -0.02 4.21 16 13 C -0.50 -14.04 8.56 -34.44 -0.29 -14.34 16 14 H 0.06 1.66 6.52 -52.48 -0.34 1.32 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 24 H 0.06 0.91 5.98 -51.93 -0.31 0.60 16 25 H 0.10 1.98 4.97 -51.93 -0.26 1.72 16 26 H 0.02 0.33 8.11 -51.93 -0.42 -0.09 16 27 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.99 7.09 -51.93 -0.37 0.62 16 32 H 0.37 5.36 9.12 45.56 0.42 5.78 16 33 H 0.06 0.91 7.58 -51.93 -0.39 0.52 16 34 H 0.06 0.88 5.99 -51.93 -0.31 0.57 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 37 H 0.05 1.22 6.67 -51.93 -0.35 0.87 16 38 H 0.07 1.43 7.15 -51.93 -0.37 1.06 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.03 0.91 4.52 -51.93 -0.23 0.67 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 302.64 15.07 4.56 4.56 Total: -1.00 -29.97 302.64 -7.04 -37.01 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.29 Total: 4.15 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.32 Total: -15.58 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.36 Total: -36.65 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.33 Total: -10.50 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.97 -7.04 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411616360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.286 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds