Wall clock time and date at job start Sun Mar 29 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46887 * 2 1 4 4 C 1.52995 * 109.47587 * 120.00074 * 2 1 3 5 5 C 1.52998 * 109.47546 * 173.38328 * 4 2 1 6 6 C 1.53000 * 109.91086 * 183.15330 * 5 4 2 7 7 O 1.42894 * 109.47379 * 185.39971 * 6 5 4 8 8 C 1.53994 * 109.91368 * 304.25342 * 5 4 2 9 9 C 1.54606 * 105.13850 * 120.77286 * 8 5 4 10 10 C 1.54936 * 102.91827 * 21.95781 * 9 8 5 11 11 N 1.47898 * 110.08035 * 61.93890 * 5 4 2 12 12 C 1.46907 * 110.99930 * 94.71826 * 11 5 4 13 13 C 1.50694 * 109.47281 * 170.00018 * 12 11 5 14 14 H 1.08003 * 120.00078 * 359.97438 * 13 12 11 15 15 C 1.37881 * 120.00012 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99738 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00006 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47341 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46942 * 120.00293 * 17 15 13 20 20 H 1.48506 * 109.47132 * 239.99899 * 17 15 13 21 21 H 1.08999 * 109.47182 * 299.99730 * 1 2 3 22 22 H 1.08994 * 109.47748 * 59.99890 * 1 2 3 23 23 H 1.09007 * 109.46766 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47182 * 240.00270 * 2 1 3 25 25 H 1.08997 * 109.47368 * 190.22114 * 3 2 1 26 26 H 1.09006 * 109.47158 * 310.22209 * 3 2 1 27 27 H 1.08998 * 109.47054 * 70.21732 * 3 2 1 28 28 H 1.08994 * 109.46868 * 53.37980 * 4 2 1 29 29 H 1.08999 * 109.46828 * 293.38130 * 4 2 1 30 30 H 1.09003 * 109.47004 * 65.39731 * 6 5 4 31 31 H 1.09005 * 109.46362 * 305.40350 * 6 5 4 32 32 H 0.96692 * 114.00435 * 179.97438 * 7 6 5 33 33 H 1.09001 * 110.31180 * 239.68619 * 8 5 4 34 34 H 1.08999 * 110.31216 * 1.76358 * 8 5 4 35 35 H 1.08998 * 110.72273 * 140.31367 * 9 8 5 36 36 H 1.08993 * 110.72661 * 263.41905 * 9 8 5 37 37 H 1.09004 * 110.66811 * 81.02340 * 10 9 8 38 38 H 1.09000 * 110.66839 * 203.97927 * 10 9 8 39 39 H 1.09004 * 109.46793 * 289.99680 * 12 11 5 40 40 H 1.08998 * 109.47270 * 49.99352 * 12 11 5 41 41 H 0.96997 * 120.00034 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5610 -0.8668 1.1688 6 6 4.0734 -1.6558 2.3754 7 8 5.5020 -1.6786 2.3579 8 6 3.9507 -1.5891 -0.1342 9 6 4.8663 -0.5969 -0.8875 10 6 5.3801 0.3281 0.2443 11 7 4.1976 0.4677 1.1322 12 6 4.5982 0.8970 2.4788 13 6 5.4542 2.1331 2.3780 14 1 5.6787 2.5572 1.4104 15 6 5.9510 2.7227 3.5212 16 7 5.6772 2.2066 4.6994 17 14 7.0128 4.2545 3.3962 18 1 7.1706 4.6324 1.9688 19 1 6.3637 5.3682 4.1337 20 1 8.3475 3.9812 3.9870 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0278 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1145 1.4480 -0.1823 26 1 1.5353 2.0063 -0.7847 27 1 1.8331 1.9010 0.9670 28 1 1.5833 -1.7089 1.3103 29 1 1.7767 -0.1436 2.1352 30 1 3.6931 -2.6763 2.3302 31 1 3.7287 -1.1800 3.2935 32 1 5.8968 -2.1627 3.0959 33 1 4.4922 -2.5081 0.0900 34 1 3.0617 -1.8091 -0.7253 35 1 5.6951 -1.1217 -1.3628 36 1 4.2973 -0.0301 -1.6243 37 1 6.2082 -0.1394 0.7771 38 1 5.6799 1.2963 -0.1565 39 1 3.7090 1.1181 3.0692 40 1 5.1653 0.1005 2.9604 41 1 6.0270 2.6211 5.5036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411616360.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:29 Heat of formation + Delta-G solvation = -64.376624 kcal Electronic energy + Delta-G solvation = -19432.669426 eV Core-core repulsion = 16732.771020 eV Total energy + Delta-G solvation = -2699.898406 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15997 -37.17960 -36.16461 -34.94612 -32.56138 -31.88544 -28.17877 -27.65120 -26.68018 -25.74888 -24.18036 -21.86981 -20.96339 -19.40313 -18.45237 -18.15164 -16.87579 -16.61129 -16.26260 -15.76366 -15.46248 -14.75852 -14.31296 -14.21904 -14.03313 -13.74232 -13.46052 -13.22576 -13.09352 -12.86346 -12.78704 -12.50969 -12.17287 -12.14762 -11.76832 -11.70398 -11.64310 -11.57107 -11.38635 -11.23491 -11.00418 -10.91768 -10.82661 -10.50626 -8.55846 -8.15250 -6.20090 1.37417 1.38215 1.50911 2.41842 3.17349 3.28049 3.51768 3.88961 4.11965 4.14583 4.29256 4.33105 4.36554 4.48174 4.52233 4.64545 4.77832 4.83283 4.93589 5.00162 5.02520 5.12597 5.13965 5.20172 5.28122 5.30791 5.34614 5.39323 5.48312 5.50447 5.54061 5.69320 5.74341 5.76917 6.09733 6.15528 6.46349 6.78365 6.90113 6.99791 7.47060 8.96465 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023935 B = 0.008498 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.540737 B = 3294.069169 C = 3617.990173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.086 4.086 5 C 0.083 3.917 6 C 0.065 3.935 7 O -0.570 6.570 8 C -0.107 4.107 9 C -0.113 4.113 10 C 0.054 3.946 11 N -0.490 5.490 12 C 0.186 3.814 13 C -0.515 4.515 14 H 0.054 0.946 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.958 3.042 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.279 1.279 21 H 0.040 0.960 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.381 0.619 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.049 0.951 39 H -0.021 1.021 40 H 0.021 0.979 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.199 -9.468 -9.585 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.196 4.196 4 C -0.124 4.124 5 C -0.008 4.008 6 C -0.014 4.014 7 O -0.377 6.377 8 C -0.144 4.144 9 C -0.151 4.151 10 C -0.074 4.074 11 N -0.213 5.213 12 C 0.060 3.940 13 C -0.554 4.554 14 H 0.072 0.928 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.205 1.205 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.229 0.771 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.068 0.932 39 H -0.003 1.003 40 H 0.038 0.962 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.629 -8.686 -10.131 14.901 hybrid contribution 1.274 0.266 1.788 2.211 sum -5.356 -8.420 -8.343 13.008 Atomic orbital electron populations 1.21845 0.94863 1.01947 1.01335 1.20966 0.95205 0.96133 0.97364 1.21991 1.03608 0.95478 0.98516 1.21486 0.92287 1.00343 0.98268 1.22118 0.95346 0.89088 0.94224 1.22674 0.81309 0.99036 0.98396 1.86589 1.19938 1.78587 1.52546 1.22413 0.99974 0.97685 0.94361 1.22446 0.99098 0.96819 0.96782 1.22867 0.93030 0.97802 0.93700 1.65010 1.22945 1.22023 1.11327 1.19802 0.92758 0.95115 0.86374 1.21615 1.29864 1.11377 0.92535 0.92795 1.25780 0.98134 1.00615 0.95087 1.70085 1.47229 1.42114 0.98026 0.85497 0.78421 0.79416 0.78250 1.19125 1.20736 1.20531 0.94119 0.92152 0.91566 0.90122 0.90041 0.94474 0.96568 0.90036 0.94739 0.91703 0.96218 0.77074 0.91502 0.89106 0.90712 0.90654 0.95303 0.93218 1.00316 0.96161 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.17 71.98 0.66 -2.60 16 2 C -0.08 -2.17 2.70 -10.80 -0.03 -2.20 16 3 C -0.14 -4.76 8.23 71.98 0.59 -4.17 16 4 C -0.09 -2.62 4.04 30.59 0.12 -2.50 16 5 C 0.08 2.83 0.53 3.67 0.00 2.83 16 6 C 0.06 2.25 4.87 71.98 0.35 2.60 16 7 O -0.57 -21.14 9.30 -148.98 -1.39 -22.52 16 8 C -0.11 -2.97 5.43 31.48 0.17 -2.80 16 9 C -0.11 -3.39 6.78 31.80 0.22 -3.18 16 10 C 0.05 2.20 4.74 86.65 0.41 2.61 16 11 N -0.49 -20.89 1.72 -838.62 -1.45 -22.34 16 12 C 0.19 9.98 3.72 85.55 0.32 10.30 16 13 C -0.52 -30.06 8.56 25.60 0.22 -29.84 16 14 H 0.05 3.13 6.52 -2.91 -0.02 3.11 16 15 C 0.00 0.06 5.46 84.66 0.46 0.52 16 16 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 17 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 24 H 0.08 1.99 5.98 -2.39 -0.01 1.98 16 25 H 0.08 3.15 4.97 -2.39 -0.01 3.14 16 26 H 0.04 1.12 8.11 -2.38 -0.02 1.10 16 27 H 0.02 0.62 8.07 -2.39 -0.02 0.60 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 1.25 8.09 -2.39 -0.02 1.23 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.02 0.79 7.09 -2.38 -0.02 0.78 16 32 H 0.38 11.25 9.12 -74.06 -0.68 10.58 16 33 H 0.07 1.80 7.58 -2.39 -0.02 1.78 16 34 H 0.09 2.07 5.99 -2.39 -0.01 2.06 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 37 H 0.03 1.31 6.67 -2.38 -0.02 1.29 16 38 H 0.05 2.14 7.15 -2.39 -0.02 2.13 16 39 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 40 H 0.02 1.17 4.52 -2.39 -0.01 1.16 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -67.02 302.64 3.30 -63.72 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.32 Total: 18.51 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.50 Total: -28.42 kcal Atomic # 7 Polarization: -78.21 SS G_CDS: -1.16 Total: -79.37 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.39 Total: -22.52 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -67.02 3.30 -63.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411616360.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.652 kcal (2) G-P(sol) polarization free energy of solvation -67.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds