Wall clock time and date at job start Sun Mar 29 2020 22:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 C 1.53001 * 109.47435 * 120.00533 * 2 1 3 5 5 C 1.52993 * 109.47311 * 70.06868 * 4 2 1 6 6 C 1.53006 * 109.87818 * 50.26466 * 5 4 2 7 7 O 1.42901 * 109.46695 * 183.86610 * 6 5 4 8 8 C 1.54318 * 109.89004 * 289.06397 * 5 4 2 9 9 C 1.55435 * 103.04633 * 262.87676 * 8 5 4 10 10 C 1.54904 * 101.52110 * 324.36734 * 9 8 5 11 11 N 1.47448 * 109.88834 * 171.29440 * 5 4 2 12 12 C 1.46902 * 110.99986 * 242.66452 * 11 5 4 13 13 C 1.50698 * 109.47274 * 172.32168 * 12 11 5 14 14 H 1.08003 * 120.00014 * 4.94388 * 13 12 11 15 15 C 1.37876 * 120.00101 * 184.94046 * 13 12 11 16 16 N 1.31516 * 119.99800 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00152 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46955 * 89.99741 * 17 15 13 19 19 H 1.48494 * 109.47352 * 209.99779 * 17 15 13 20 20 H 1.48505 * 109.46899 * 330.00093 * 17 15 13 21 21 H 1.09003 * 109.46991 * 279.30257 * 1 2 3 22 22 H 1.09000 * 109.47466 * 39.29980 * 1 2 3 23 23 H 1.08996 * 109.47358 * 159.30877 * 1 2 3 24 24 H 1.09003 * 109.46944 * 240.00201 * 2 1 3 25 25 H 1.08994 * 109.46852 * 64.86146 * 3 2 1 26 26 H 1.09005 * 109.46812 * 184.86125 * 3 2 1 27 27 H 1.09001 * 109.46689 * 304.85710 * 3 2 1 28 28 H 1.09000 * 109.46780 * 310.07062 * 4 2 1 29 29 H 1.09000 * 109.47109 * 190.07437 * 4 2 1 30 30 H 1.08996 * 109.46730 * 303.86146 * 6 5 4 31 31 H 1.08996 * 109.47114 * 63.86355 * 6 5 4 32 32 H 0.96705 * 113.99983 * 184.91322 * 7 6 5 33 33 H 1.08993 * 110.70555 * 21.26241 * 8 5 4 34 34 H 1.09006 * 110.70401 * 144.32123 * 8 5 4 35 35 H 1.09000 * 111.10882 * 206.29559 * 9 8 5 36 36 H 1.09001 * 110.99852 * 82.38677 * 9 8 5 37 37 H 1.09006 * 110.37525 * 278.18010 * 10 9 8 38 38 H 1.08995 * 110.37779 * 155.95081 * 10 9 8 39 39 H 1.08997 * 109.47175 * 292.32808 * 12 11 5 40 40 H 1.09004 * 109.47296 * 52.32312 * 12 11 5 41 41 H 0.97006 * 119.99615 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.7465 -2.2181 1.1294 6 6 2.2397 -2.7385 -0.2223 7 8 1.8814 -4.1147 -0.3623 8 6 0.2304 -2.4687 1.2708 9 6 0.0776 -2.8610 2.7671 10 6 1.3842 -3.6558 3.0135 11 7 2.4139 -2.9491 2.2222 12 6 3.4102 -3.8907 1.6942 13 6 4.1998 -4.4788 2.8351 14 1 3.9316 -4.2446 3.8547 15 6 5.2646 -5.3158 2.5772 16 7 5.9534 -5.8294 3.5730 17 14 5.7290 -5.7205 0.8137 18 1 6.7132 -4.7240 0.3199 19 1 6.3288 -7.0778 0.7587 20 1 4.5141 -5.6811 -0.0395 21 1 -0.3633 0.1661 1.0142 22 1 -0.3634 0.7952 -0.6509 23 1 -0.3634 -0.9613 -0.3631 24 1 1.8933 -0.5138 -0.8900 25 1 1.7495 1.9305 0.9303 26 1 3.1265 1.4437 -0.0871 27 1 1.6073 1.9808 -0.8433 28 1 1.5374 -0.3219 2.1300 29 1 3.1151 -0.5683 1.3436 30 1 1.7803 -2.1601 -1.0238 31 1 3.3237 -2.6378 -0.2767 32 1 2.2274 -4.5317 -1.1633 33 1 -0.3323 -1.5615 1.0511 34 1 -0.0876 -3.2846 0.6216 35 1 -0.7980 -3.4919 2.9201 36 1 0.0342 -1.9751 3.4006 37 1 1.2754 -4.6826 2.6639 38 1 1.6431 -3.6416 4.0721 39 1 2.9038 -4.6898 1.1528 40 1 4.0848 -3.3649 1.0184 41 1 6.7028 -6.4180 3.3915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411616373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:32 Heat of formation + Delta-G solvation = -33.827405 kcal Electronic energy + Delta-G solvation = -19219.728875 eV Core-core repulsion = 16521.155183 eV Total energy + Delta-G solvation = -2698.573692 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88478 -36.04054 -35.51166 -32.83492 -31.07170 -30.23065 -27.63883 -26.37805 -25.72064 -24.53533 -21.87786 -20.58805 -19.78994 -18.10509 -17.25832 -16.67267 -15.42857 -15.08700 -14.64357 -14.37546 -13.78446 -13.75030 -13.25649 -13.23645 -12.75671 -12.43143 -12.19205 -12.03457 -11.90283 -11.66942 -11.57843 -11.10866 -10.95581 -10.75258 -10.67849 -10.25870 -10.18814 -10.14762 -9.90551 -9.82866 -9.57515 -9.36745 -9.03248 -8.44784 -7.10489 -5.95277 -3.89167 3.31760 3.38803 3.41472 4.49001 4.56037 4.63522 4.95214 5.05761 5.14780 5.28462 5.33643 5.39519 5.50305 5.55761 5.63126 5.74770 5.80647 5.81828 5.88009 5.92619 6.00677 6.03722 6.14547 6.23006 6.25768 6.32186 6.44212 6.54305 6.58297 6.71138 6.79176 6.87563 6.98277 7.40269 7.74387 7.97550 8.09848 8.20488 8.80761 9.14567 9.67952 11.18680 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007981 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.790928 B = 3507.650383 C = 3771.198235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.089 4.089 5 C 0.103 3.897 6 C 0.060 3.940 7 O -0.558 6.558 8 C -0.155 4.155 9 C -0.132 4.132 10 C 0.063 3.937 11 N -0.508 5.508 12 C 0.147 3.853 13 C -0.503 4.503 14 H 0.075 0.925 15 C 0.064 3.936 16 N -0.906 5.906 17 Si 0.875 3.125 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.059 0.941 22 H 0.047 0.953 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.368 0.632 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.015 0.985 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 10.373 -9.445 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.124 4.124 3 C -0.202 4.202 4 C -0.127 4.127 5 C 0.013 3.987 6 C -0.018 4.018 7 O -0.362 6.362 8 C -0.192 4.192 9 C -0.170 4.170 10 C -0.065 4.065 11 N -0.232 5.232 12 C 0.020 3.980 13 C -0.542 4.542 14 H 0.093 0.907 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.703 3.297 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.189 1.189 21 H 0.078 0.922 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.214 0.786 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.062 10.709 -8.508 17.591 hybrid contribution 0.477 -1.016 -1.902 2.208 sum -10.584 9.693 -10.410 17.730 Atomic orbital electron populations 1.22211 0.95817 1.01384 1.01549 1.21316 0.95703 0.96113 0.99277 1.21850 1.00975 0.96054 1.01352 1.21558 1.01753 0.92827 0.96559 1.21726 0.93217 0.94297 0.89481 1.22877 0.99190 0.82246 0.97532 1.86642 1.78528 1.24346 1.46728 1.23489 0.96199 1.02595 0.96942 1.22765 0.98084 0.99894 0.96255 1.22764 0.88932 0.95960 0.98820 1.63535 1.12466 1.28103 1.19050 1.20660 0.90696 0.90740 0.95857 1.21176 1.12534 1.26238 0.94229 0.90663 1.24893 0.96171 0.95924 0.96632 1.69911 1.20576 1.33382 1.30782 0.86857 0.78879 0.77595 0.86415 1.20605 1.21517 1.18933 0.92194 0.93412 0.91672 0.91046 0.92728 0.92742 0.93162 0.91384 0.91341 0.93973 0.92882 0.78598 0.89128 0.91204 0.92020 0.91735 0.93764 0.91248 0.95300 0.96707 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.58 37.15 0.28 -1.31 16 2 C -0.11 -1.24 2.58 -90.62 -0.23 -1.47 16 3 C -0.14 -1.50 9.12 37.16 0.34 -1.17 16 4 C -0.09 -1.32 4.29 -26.73 -0.11 -1.44 16 5 C 0.10 1.77 0.73 -130.61 -0.10 1.68 16 6 C 0.06 0.99 4.78 37.16 0.18 1.16 16 7 O -0.56 -9.77 9.73 -35.23 -0.34 -10.11 16 8 C -0.15 -2.36 4.96 -24.75 -0.12 -2.49 16 9 C -0.13 -2.11 7.10 -24.43 -0.17 -2.28 16 10 C 0.06 1.30 5.96 -2.30 -0.01 1.28 16 11 N -0.51 -11.02 4.80 -217.17 -1.04 -12.06 16 12 C 0.15 3.65 2.40 -4.98 -0.01 3.63 16 13 C -0.50 -14.84 9.35 -34.44 -0.32 -15.16 16 14 H 0.08 2.43 7.80 -52.48 -0.41 2.02 16 15 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 16 N -0.91 -28.62 13.96 55.43 0.77 -27.85 16 17 Si 0.87 21.94 27.37 -169.99 -4.65 17.28 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.26 -6.24 6.69 56.52 0.38 -5.86 16 21 H 0.06 0.62 7.04 -51.93 -0.37 0.26 16 22 H 0.05 0.43 7.89 -51.93 -0.41 0.02 16 23 H 0.06 0.70 6.18 -51.93 -0.32 0.38 16 24 H 0.07 0.85 5.66 -51.93 -0.29 0.56 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.45 8.03 -51.93 -0.42 0.04 16 28 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 29 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 30 H 0.04 0.58 5.90 -51.93 -0.31 0.27 16 31 H 0.05 0.95 6.21 -51.93 -0.32 0.63 16 32 H 0.37 5.03 9.12 45.56 0.42 5.44 16 33 H 0.09 1.16 3.29 -51.93 -0.17 0.99 16 34 H 0.07 1.14 7.05 -51.93 -0.37 0.77 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.99 7.66 -51.93 -0.40 0.59 16 38 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 39 H 0.03 0.75 4.82 -51.93 -0.25 0.50 16 40 H 0.02 0.38 5.28 -51.93 -0.27 0.10 16 41 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 297.97 15.07 4.49 4.49 Total: -1.00 -32.43 297.97 -7.15 -39.58 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -5.99 Total: 4.41 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -0.39 Total: -15.74 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: -0.27 Total: -39.91 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -0.34 Total: -10.11 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.65 Total: 17.28 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.43 -7.15 -39.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411616373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds