Wall clock time and date at job start Sun Mar 29 2020 22:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47219 * 2 1 4 4 C 1.53001 * 109.47435 * 120.00533 * 2 1 3 5 5 C 1.52993 * 109.47311 * 70.06868 * 4 2 1 6 6 C 1.53006 * 109.87818 * 50.26466 * 5 4 2 7 7 O 1.42901 * 109.46695 * 183.86610 * 6 5 4 8 8 C 1.54318 * 109.89004 * 289.06397 * 5 4 2 9 9 C 1.55435 * 103.04633 * 262.87676 * 8 5 4 10 10 C 1.54904 * 101.52110 * 324.36734 * 9 8 5 11 11 N 1.47448 * 109.88834 * 171.29440 * 5 4 2 12 12 C 1.46902 * 110.99986 * 242.66452 * 11 5 4 13 13 C 1.50698 * 109.47274 * 172.32168 * 12 11 5 14 14 H 1.08003 * 120.00014 * 4.94388 * 13 12 11 15 15 C 1.37876 * 120.00101 * 184.94046 * 13 12 11 16 16 N 1.31516 * 119.99800 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 120.00152 * 0.02562 * 15 13 12 18 18 H 1.48505 * 109.46955 * 89.99741 * 17 15 13 19 19 H 1.48494 * 109.47352 * 209.99779 * 17 15 13 20 20 H 1.48505 * 109.46899 * 330.00093 * 17 15 13 21 21 H 1.09003 * 109.46991 * 279.30257 * 1 2 3 22 22 H 1.09000 * 109.47466 * 39.29980 * 1 2 3 23 23 H 1.08996 * 109.47358 * 159.30877 * 1 2 3 24 24 H 1.09003 * 109.46944 * 240.00201 * 2 1 3 25 25 H 1.08994 * 109.46852 * 64.86146 * 3 2 1 26 26 H 1.09005 * 109.46812 * 184.86125 * 3 2 1 27 27 H 1.09001 * 109.46689 * 304.85710 * 3 2 1 28 28 H 1.09000 * 109.46780 * 310.07062 * 4 2 1 29 29 H 1.09000 * 109.47109 * 190.07437 * 4 2 1 30 30 H 1.08996 * 109.46730 * 303.86146 * 6 5 4 31 31 H 1.08996 * 109.47114 * 63.86355 * 6 5 4 32 32 H 0.96705 * 113.99983 * 184.91322 * 7 6 5 33 33 H 1.08993 * 110.70555 * 21.26241 * 8 5 4 34 34 H 1.09006 * 110.70401 * 144.32123 * 8 5 4 35 35 H 1.09000 * 111.10882 * 206.29559 * 9 8 5 36 36 H 1.09001 * 110.99852 * 82.38677 * 9 8 5 37 37 H 1.09006 * 110.37525 * 278.18010 * 10 9 8 38 38 H 1.08995 * 110.37779 * 155.95081 * 10 9 8 39 39 H 1.08997 * 109.47175 * 292.32808 * 12 11 5 40 40 H 1.09004 * 109.47296 * 52.32312 * 12 11 5 41 41 H 0.97006 * 119.99615 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.7465 -2.2181 1.1294 6 6 2.2397 -2.7385 -0.2223 7 8 1.8814 -4.1147 -0.3623 8 6 0.2304 -2.4687 1.2708 9 6 0.0776 -2.8610 2.7671 10 6 1.3842 -3.6558 3.0135 11 7 2.4139 -2.9491 2.2222 12 6 3.4102 -3.8907 1.6942 13 6 4.1998 -4.4788 2.8351 14 1 3.9316 -4.2446 3.8547 15 6 5.2646 -5.3158 2.5772 16 7 5.9534 -5.8294 3.5730 17 14 5.7290 -5.7205 0.8137 18 1 6.7132 -4.7240 0.3199 19 1 6.3288 -7.0778 0.7587 20 1 4.5141 -5.6811 -0.0395 21 1 -0.3633 0.1661 1.0142 22 1 -0.3634 0.7952 -0.6509 23 1 -0.3634 -0.9613 -0.3631 24 1 1.8933 -0.5138 -0.8900 25 1 1.7495 1.9305 0.9303 26 1 3.1265 1.4437 -0.0871 27 1 1.6073 1.9808 -0.8433 28 1 1.5374 -0.3219 2.1300 29 1 3.1151 -0.5683 1.3436 30 1 1.7803 -2.1601 -1.0238 31 1 3.3237 -2.6378 -0.2767 32 1 2.2274 -4.5317 -1.1633 33 1 -0.3323 -1.5615 1.0511 34 1 -0.0876 -3.2846 0.6216 35 1 -0.7980 -3.4919 2.9201 36 1 0.0342 -1.9751 3.4006 37 1 1.2754 -4.6826 2.6639 38 1 1.6431 -3.6416 4.0721 39 1 2.9038 -4.6898 1.1528 40 1 4.0848 -3.3649 1.0184 41 1 6.7028 -6.4180 3.3915 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411616373.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:31 Heat of formation + Delta-G solvation = -58.346038 kcal Electronic energy + Delta-G solvation = -19220.792083 eV Core-core repulsion = 16521.155183 eV Total energy + Delta-G solvation = -2699.636900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26344 -37.18830 -36.88306 -34.93055 -32.82771 -31.53174 -28.98893 -27.85998 -26.93445 -25.88811 -23.77751 -21.95087 -20.98861 -19.55038 -18.90239 -18.43466 -16.95494 -16.56601 -16.08048 -15.69389 -15.40052 -15.11459 -14.78154 -14.49144 -14.37251 -13.83105 -13.55895 -13.34595 -13.06263 -12.98925 -12.93279 -12.65348 -12.47626 -12.18483 -11.89578 -11.87771 -11.63658 -11.55157 -11.42887 -11.21669 -11.05260 -10.87767 -10.81596 -10.59008 -8.80341 -8.26823 -6.27453 1.30914 1.34699 1.46843 2.35790 3.05909 3.23322 3.34971 3.83236 3.95067 4.10451 4.12182 4.18221 4.23323 4.42350 4.44465 4.49663 4.66979 4.74763 4.87651 4.90455 4.92252 4.97972 5.02322 5.05987 5.07802 5.13355 5.19835 5.24575 5.34021 5.37850 5.47112 5.51790 5.54613 5.59691 5.68153 6.07848 6.43279 6.75162 6.81190 6.86247 7.34784 8.90674 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.007981 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.790928 B = 3507.650383 C = 3771.198235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.084 4.084 5 C 0.094 3.906 6 C 0.060 3.940 7 O -0.578 6.578 8 C -0.145 4.145 9 C -0.121 4.121 10 C 0.059 3.941 11 N -0.530 5.530 12 C 0.166 3.834 13 C -0.517 4.517 14 H 0.025 0.975 15 C -0.001 4.001 16 N -0.955 5.955 17 Si 0.951 3.049 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.238 1.238 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.385 0.615 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.019 0.981 38 H 0.043 0.957 39 H 0.028 0.972 40 H 0.017 0.983 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.902 11.807 -12.474 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.201 4.201 4 C -0.123 4.123 5 C 0.004 3.996 6 C -0.018 4.018 7 O -0.385 6.385 8 C -0.182 4.182 9 C -0.159 4.159 10 C -0.069 4.069 11 N -0.254 5.254 12 C 0.039 3.961 13 C -0.556 4.556 14 H 0.043 0.957 15 C -0.196 4.196 16 N -0.597 5.597 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.161 1.161 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.234 0.766 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.037 0.963 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.788 12.162 -11.549 21.091 hybrid contribution 1.009 -1.433 -0.830 1.939 sum -11.780 10.729 -12.379 20.177 Atomic orbital electron populations 1.22185 0.94315 1.02226 1.02234 1.21263 0.96878 0.96415 0.97229 1.21837 1.00667 0.95320 1.02272 1.21533 1.00464 0.91705 0.98553 1.21976 0.94270 0.94818 0.88519 1.22880 0.98375 0.82446 0.98095 1.86577 1.78718 1.24988 1.48234 1.23506 0.94910 1.03879 0.95884 1.22736 0.95920 0.99907 0.97290 1.22714 0.91474 0.95523 0.97178 1.63401 1.13266 1.27423 1.21309 1.20322 0.90957 0.91128 0.93696 1.21490 1.13565 1.26855 0.93657 0.95672 1.25931 0.95918 0.95538 1.02248 1.70087 1.21416 1.34393 1.33812 0.85655 0.79570 0.77466 0.79932 1.19404 1.21089 1.16148 0.91980 0.91424 0.91579 0.90837 0.92616 0.93448 0.91253 0.91457 0.93697 0.90332 0.94635 0.76639 0.85891 0.91706 0.90009 0.90433 0.96295 0.93849 0.95478 0.96496 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 7.58 71.98 0.55 -1.96 16 2 C -0.10 -2.00 2.58 -10.79 -0.03 -2.03 16 3 C -0.14 -2.55 9.12 71.98 0.66 -1.89 16 4 C -0.08 -2.37 4.29 30.59 0.13 -2.24 16 5 C 0.09 3.08 0.73 3.87 0.00 3.08 16 6 C 0.06 1.84 4.78 71.98 0.34 2.18 16 7 O -0.58 -18.90 9.73 -148.98 -1.45 -20.35 16 8 C -0.14 -4.02 4.96 31.88 0.16 -3.86 16 9 C -0.12 -3.67 7.10 32.08 0.23 -3.44 16 10 C 0.06 2.51 5.96 86.77 0.52 3.03 16 11 N -0.53 -23.37 4.80 -841.00 -4.04 -27.40 16 12 C 0.17 8.37 2.40 85.56 0.21 8.57 16 13 C -0.52 -31.90 9.35 25.60 0.24 -31.66 16 14 H 0.02 1.74 7.80 -2.91 -0.02 1.72 16 15 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 16 N -0.96 -62.63 13.96 21.45 0.30 -62.34 16 17 Si 0.95 45.54 27.37 68.60 1.88 47.42 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 20 H -0.24 -10.30 6.69 99.48 0.67 -9.64 16 21 H 0.06 1.02 7.04 -2.39 -0.02 1.00 16 22 H 0.07 0.89 7.89 -2.39 -0.02 0.87 16 23 H 0.07 1.09 6.18 -2.39 -0.01 1.08 16 24 H 0.07 1.47 5.66 -2.39 -0.01 1.45 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 28 H 0.07 1.88 7.88 -2.39 -0.02 1.86 16 29 H 0.04 1.46 8.11 -2.39 -0.02 1.44 16 30 H 0.08 1.85 5.90 -2.39 -0.01 1.84 16 31 H 0.04 1.21 6.21 -2.39 -0.01 1.19 16 32 H 0.38 9.39 9.12 -74.05 -0.68 8.71 16 33 H 0.12 2.65 3.29 -2.39 -0.01 2.64 16 34 H 0.06 1.91 7.05 -2.38 -0.02 1.89 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.02 0.87 7.66 -2.38 -0.02 0.85 16 38 H 0.04 1.99 8.08 -2.39 -0.02 1.97 16 39 H 0.03 1.41 4.82 -2.39 -0.01 1.40 16 40 H 0.02 0.85 5.28 -2.38 -0.01 0.84 16 41 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 Total: -1.00 -73.70 297.97 0.45 -73.24 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.30 Total: 19.21 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 3.46 Total: -29.79 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.74 Total: -89.74 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.45 Total: -20.35 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -73.70 0.45 -73.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411616373.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.898 kcal (2) G-P(sol) polarization free energy of solvation -73.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds