Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46837 * 2 1 4 4 C 1.53000 * 112.90647 * 292.36427 * 3 2 1 5 5 C 1.53002 * 109.46664 * 305.90990 * 4 3 2 6 6 C 1.53779 * 113.61438 * 63.61257 * 3 2 1 7 7 H 1.09000 * 113.69059 * 334.56244 * 6 3 2 8 8 N 1.46892 * 113.61638 * 203.66474 * 6 3 2 9 9 C 1.46898 * 111.00193 * 157.99930 * 8 6 3 10 10 C 1.50698 * 109.47330 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00044 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99773 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99908 * 180.27433 * 12 10 9 15 15 H 1.48500 * 109.47093 * 179.72142 * 14 12 10 16 16 H 1.48503 * 109.46965 * 299.72273 * 14 12 10 17 17 H 1.48504 * 109.47239 * 59.71978 * 14 12 10 18 18 C 1.53786 * 87.08221 * 89.11676 * 6 3 2 19 19 C 1.53782 * 113.61229 * 161.11029 * 3 2 1 20 20 H 1.09002 * 113.68889 * 156.32450 * 19 3 2 21 21 O 1.42901 * 113.61632 * 25.43212 * 19 3 2 22 22 C 1.42902 * 113.99829 * 152.99458 * 21 19 3 23 23 H 1.09002 * 109.46453 * 182.87304 * 1 2 3 24 24 H 1.08997 * 109.47287 * 302.86610 * 1 2 3 25 25 H 1.08996 * 109.47244 * 62.87330 * 1 2 3 26 26 H 1.08998 * 109.47551 * 240.00198 * 2 1 3 27 27 H 1.08995 * 109.47489 * 119.99827 * 2 1 3 28 28 H 1.08995 * 109.47212 * 65.90639 * 4 3 2 29 29 H 1.08996 * 109.46968 * 185.91338 * 4 3 2 30 30 H 1.08999 * 109.47140 * 305.79197 * 5 4 3 31 31 H 1.08992 * 109.47401 * 65.80083 * 5 4 3 32 32 H 1.09007 * 109.46839 * 185.79746 * 5 4 3 33 33 H 1.00896 * 110.99877 * 34.04444 * 8 6 3 34 34 H 1.09000 * 109.47338 * 60.00206 * 9 8 6 35 35 H 1.09008 * 109.47320 * 299.99777 * 9 8 6 36 36 H 0.97001 * 119.99456 * 180.02562 * 13 12 10 37 37 H 1.08992 * 113.61464 * 139.98245 * 18 6 3 38 38 H 1.09003 * 113.61206 * 270.89034 * 18 6 3 39 39 H 1.09000 * 109.46635 * 60.00196 * 22 21 19 40 40 H 1.08996 * 109.46771 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.47107 * 300.00022 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7329 2.1828 -1.3033 5 6 2.2713 1.3763 -2.4868 6 6 1.6549 2.2321 1.2622 7 1 0.7565 1.8598 1.7546 8 7 1.6346 3.6873 1.0628 9 6 0.7924 4.3452 2.0707 10 6 0.7956 5.8334 1.8342 11 1 1.3665 6.2491 1.0170 12 6 0.0705 6.6646 2.6615 13 7 -0.6242 6.1585 3.6568 14 14 0.0684 8.5087 2.3636 15 1 -0.7868 9.1733 3.3796 16 1 1.4555 9.0285 2.4676 17 1 -0.4653 8.7903 1.0067 18 6 2.9603 1.7144 1.8890 19 6 3.5022 1.5790 0.4562 20 1 3.9935 2.4798 0.0883 21 8 4.2796 0.3983 0.2473 22 6 5.6764 0.6452 0.0738 23 1 -0.3632 -1.0264 0.0515 24 1 -0.3634 0.5577 0.8631 25 1 -0.3633 0.4686 -0.9146 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.6546 2.3041 -1.4069 29 1 2.2088 3.1632 -1.2852 30 1 3.3298 1.1668 -2.3321 31 1 1.7229 0.4378 -2.5665 32 1 2.1450 1.9501 -3.4050 33 1 1.3301 3.9201 0.1295 34 1 1.1846 4.1342 3.0656 35 1 -0.2274 3.9678 1.9946 36 1 -1.1346 6.7432 4.2387 37 1 3.4844 2.4611 2.4854 38 1 2.8486 0.7609 2.4053 39 1 6.0714 1.1374 0.9625 40 1 6.1961 -0.3005 -0.0796 41 1 5.8268 1.2870 -0.7943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411632133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = -40.042800 kcal Electronic energy + Delta-G solvation = -18506.895054 eV Core-core repulsion = 15808.051843 eV Total energy + Delta-G solvation = -2698.843212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25731 -36.56960 -34.25695 -32.73565 -31.55320 -30.96942 -27.01074 -26.10681 -25.34540 -23.25493 -23.03605 -21.54154 -20.70049 -17.64213 -16.56506 -16.32123 -15.62471 -15.23816 -14.86878 -14.61594 -14.06989 -13.70766 -13.26603 -13.20988 -12.84501 -12.40543 -12.23727 -12.07497 -11.85473 -11.77933 -11.44839 -11.22022 -11.08664 -10.97645 -10.79625 -10.70645 -10.55804 -10.26047 -10.02836 -9.88391 -9.57650 -9.12609 -8.98287 -8.47519 -7.28865 -6.02816 -4.04952 3.33234 3.37229 3.40082 4.01662 4.42264 4.71988 4.84557 4.96745 5.23503 5.25943 5.32850 5.34696 5.41629 5.48751 5.57401 5.59549 5.64202 5.69372 5.72532 5.87867 5.95244 6.04447 6.08146 6.13915 6.22835 6.31189 6.34856 6.41606 6.50040 6.61977 6.70996 6.79122 7.29325 7.43486 7.50382 7.79412 8.14833 8.40311 8.62540 9.04123 9.59882 11.08235 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.005786 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.850789 B = 4837.762985 C = 5035.141767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.076 4.076 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.074 3.926 7 H 0.056 0.944 8 N -0.674 5.674 9 C 0.196 3.804 10 C -0.515 4.515 11 H 0.061 0.939 12 C 0.057 3.943 13 N -0.897 5.897 14 Si 0.899 3.101 15 H -0.288 1.288 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.149 4.149 19 C 0.081 3.919 20 H 0.090 0.910 21 O -0.380 6.380 22 C 0.032 3.968 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.333 0.667 34 H 0.027 0.973 35 H -0.013 1.013 36 H 0.262 0.738 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.919 -11.803 -8.807 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.126 4.126 3 C -0.077 4.077 4 C -0.153 4.153 5 C -0.202 4.202 6 C -0.037 4.037 7 H 0.074 0.926 8 N -0.307 5.307 9 C 0.070 3.930 10 C -0.554 4.554 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.726 3.274 15 H -0.213 1.213 16 H -0.202 1.202 17 H -0.203 1.203 18 C -0.187 4.187 19 C 0.024 3.976 20 H 0.107 0.893 21 O -0.298 6.298 22 C -0.065 4.065 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.153 0.847 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.284 -11.807 -8.307 16.170 hybrid contribution -0.761 1.109 -0.234 1.365 sum 6.523 -10.698 -8.542 15.164 Atomic orbital electron populations 1.21823 0.96231 1.01010 1.02128 1.21112 0.94897 0.94285 1.02313 1.22430 0.94461 0.95923 0.94903 1.21471 1.01192 0.99124 0.93468 1.21725 1.01151 0.99894 0.97442 1.22460 0.96322 0.90000 0.94949 0.92582 1.60637 1.58531 1.03629 1.07916 1.19571 0.89309 0.93389 0.90768 1.21142 1.28669 0.91454 1.14126 0.92102 1.24980 0.95364 0.99026 0.95120 1.69954 1.30947 1.35384 1.17375 0.86556 0.77989 0.85004 0.77805 1.21336 1.20198 1.20272 1.23506 0.98044 1.00592 0.96583 1.23806 0.90173 0.87331 0.96300 0.89252 1.87895 1.17605 1.31715 1.92615 1.22690 0.83010 1.01286 0.99506 0.93193 0.92412 0.92866 0.91534 0.91753 0.91786 0.90861 0.92811 0.92857 0.93359 0.84744 0.95447 0.99570 0.92863 0.90774 0.90250 0.94285 0.90417 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.58 37.16 0.36 -1.63 16 2 C -0.09 -1.18 4.35 -26.73 -0.12 -1.30 16 3 C -0.08 -1.12 0.51 -153.69 -0.08 -1.20 16 4 C -0.11 -1.60 4.00 -26.73 -0.11 -1.70 16 5 C -0.14 -1.71 9.26 37.16 0.34 -1.37 16 6 C 0.07 1.33 3.50 -66.90 -0.23 1.10 16 7 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 8 N -0.67 -14.30 6.27 -107.13 -0.67 -14.97 16 9 C 0.20 5.16 5.30 -4.98 -0.03 5.13 16 10 C -0.52 -14.60 9.32 -34.44 -0.32 -14.92 16 11 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 14 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 18 C -0.15 -2.48 7.36 -25.92 -0.19 -2.67 16 19 C 0.08 1.22 3.37 -25.92 -0.09 1.13 16 20 H 0.09 1.39 7.80 -51.93 -0.40 0.99 16 21 O -0.38 -5.34 9.87 -35.23 -0.35 -5.69 16 22 C 0.03 0.35 10.86 101.05 1.10 1.45 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.82 6.56 -51.93 -0.34 0.48 16 25 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 26 H 0.07 0.85 6.42 -51.93 -0.33 0.52 16 27 H 0.06 0.90 7.26 -51.93 -0.38 0.52 16 28 H 0.06 0.90 7.33 -51.93 -0.38 0.52 16 29 H 0.07 1.08 6.78 -51.93 -0.35 0.73 16 30 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 31 H 0.05 0.60 6.81 -51.93 -0.35 0.25 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.33 6.75 6.18 -39.29 -0.24 6.50 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H -0.01 -0.38 8.13 -51.92 -0.42 -0.80 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 318.64 15.07 4.80 4.80 Total: -1.00 -29.48 318.64 -7.19 -36.67 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.22 Total: 3.14 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 0.54 Total: -14.46 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.06 Total: -41.15 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.35 Total: -5.69 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.48 -7.19 -36.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.374 kcal (2) G-P(sol) polarization free energy of solvation -29.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds