Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53010 * 109.46837 * 2 1 4 4 C 1.53000 * 112.90647 * 292.36427 * 3 2 1 5 5 C 1.53002 * 109.46664 * 305.90990 * 4 3 2 6 6 C 1.53779 * 113.61438 * 63.61257 * 3 2 1 7 7 H 1.09000 * 113.69059 * 334.56244 * 6 3 2 8 8 N 1.46892 * 113.61638 * 203.66474 * 6 3 2 9 9 C 1.46898 * 111.00193 * 157.99930 * 8 6 3 10 10 C 1.50698 * 109.47330 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00044 * 359.97438 * 10 9 8 12 12 C 1.37882 * 120.00153 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99773 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99908 * 180.27433 * 12 10 9 15 15 H 1.48500 * 109.47093 * 179.72142 * 14 12 10 16 16 H 1.48503 * 109.46965 * 299.72273 * 14 12 10 17 17 H 1.48504 * 109.47239 * 59.71978 * 14 12 10 18 18 C 1.53786 * 87.08221 * 89.11676 * 6 3 2 19 19 C 1.53782 * 113.61229 * 161.11029 * 3 2 1 20 20 H 1.09002 * 113.68889 * 156.32450 * 19 3 2 21 21 O 1.42901 * 113.61632 * 25.43212 * 19 3 2 22 22 C 1.42902 * 113.99829 * 152.99458 * 21 19 3 23 23 H 1.09002 * 109.46453 * 182.87304 * 1 2 3 24 24 H 1.08997 * 109.47287 * 302.86610 * 1 2 3 25 25 H 1.08996 * 109.47244 * 62.87330 * 1 2 3 26 26 H 1.08998 * 109.47551 * 240.00198 * 2 1 3 27 27 H 1.08995 * 109.47489 * 119.99827 * 2 1 3 28 28 H 1.08995 * 109.47212 * 65.90639 * 4 3 2 29 29 H 1.08996 * 109.46968 * 185.91338 * 4 3 2 30 30 H 1.08999 * 109.47140 * 305.79197 * 5 4 3 31 31 H 1.08992 * 109.47401 * 65.80083 * 5 4 3 32 32 H 1.09007 * 109.46839 * 185.79746 * 5 4 3 33 33 H 1.00896 * 110.99877 * 34.04444 * 8 6 3 34 34 H 1.09000 * 109.47338 * 60.00206 * 9 8 6 35 35 H 1.09008 * 109.47320 * 299.99777 * 9 8 6 36 36 H 0.97001 * 119.99456 * 180.02562 * 13 12 10 37 37 H 1.08992 * 113.61464 * 139.98245 * 18 6 3 38 38 H 1.09003 * 113.61206 * 270.89034 * 18 6 3 39 39 H 1.09000 * 109.46635 * 60.00196 * 22 21 19 40 40 H 1.08996 * 109.46771 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.47107 * 300.00022 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7329 2.1828 -1.3033 5 6 2.2713 1.3763 -2.4868 6 6 1.6549 2.2321 1.2622 7 1 0.7565 1.8598 1.7546 8 7 1.6346 3.6873 1.0628 9 6 0.7924 4.3452 2.0707 10 6 0.7956 5.8334 1.8342 11 1 1.3665 6.2491 1.0170 12 6 0.0705 6.6646 2.6615 13 7 -0.6242 6.1585 3.6568 14 14 0.0684 8.5087 2.3636 15 1 -0.7868 9.1733 3.3796 16 1 1.4555 9.0285 2.4676 17 1 -0.4653 8.7903 1.0067 18 6 2.9603 1.7144 1.8890 19 6 3.5022 1.5790 0.4562 20 1 3.9935 2.4798 0.0883 21 8 4.2796 0.3983 0.2473 22 6 5.6764 0.6452 0.0738 23 1 -0.3632 -1.0264 0.0515 24 1 -0.3634 0.5577 0.8631 25 1 -0.3633 0.4686 -0.9146 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.6546 2.3041 -1.4069 29 1 2.2088 3.1632 -1.2852 30 1 3.3298 1.1668 -2.3321 31 1 1.7229 0.4378 -2.5665 32 1 2.1450 1.9501 -3.4050 33 1 1.3301 3.9201 0.1295 34 1 1.1846 4.1342 3.0656 35 1 -0.2274 3.9678 1.9946 36 1 -1.1346 6.7432 4.2387 37 1 3.4844 2.4611 2.4854 38 1 2.8486 0.7609 2.4053 39 1 6.0714 1.1374 0.9625 40 1 6.1961 -0.3005 -0.0796 41 1 5.8268 1.2870 -0.7943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411632133.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = -58.808077 kcal Electronic energy + Delta-G solvation = -18507.708778 eV Core-core repulsion = 15808.051843 eV Total energy + Delta-G solvation = -2699.656935 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55238 -37.73357 -36.02645 -34.42128 -33.10153 -32.17879 -28.68120 -27.44694 -26.52756 -24.70917 -24.27271 -23.32103 -22.05638 -19.16217 -18.20525 -17.75607 -17.01085 -16.59877 -16.43559 -16.02193 -15.31117 -15.14434 -14.69162 -14.51440 -14.17578 -13.88777 -13.68998 -13.45813 -13.19000 -13.12952 -12.74547 -12.70666 -12.61294 -12.46795 -12.17254 -12.07998 -12.03372 -11.64857 -11.54624 -11.23095 -11.13589 -10.83547 -10.65306 -10.16721 -9.11493 -8.22920 -6.34619 1.40633 1.44299 1.52318 2.39310 2.92343 3.10369 3.38594 3.54282 3.62756 3.95442 4.06823 4.15063 4.35309 4.44052 4.50288 4.56762 4.60891 4.63113 4.66255 4.78656 4.86558 4.90037 4.95309 4.98816 5.08129 5.10296 5.12762 5.16868 5.24654 5.28902 5.37452 5.42989 5.54731 5.60679 5.64254 6.02608 6.38666 6.45272 6.72988 6.88900 7.36527 8.88644 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.005786 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.850789 B = 4837.762985 C = 5035.141767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.062 4.062 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.059 3.941 7 H 0.039 0.961 8 N -0.668 5.668 9 C 0.214 3.786 10 C -0.536 4.536 11 H 0.065 0.935 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.974 3.026 15 H -0.283 1.283 16 H -0.268 1.268 17 H -0.265 1.265 18 C -0.150 4.150 19 C 0.095 3.905 20 H 0.085 0.915 21 O -0.385 6.385 22 C 0.024 3.976 23 H 0.068 0.932 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.339 0.661 34 H -0.005 1.005 35 H -0.042 1.042 36 H 0.265 0.735 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.037 0.963 40 H 0.101 0.899 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -12.014 -10.625 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 C -0.063 4.063 4 C -0.153 4.153 5 C -0.194 4.194 6 C -0.052 4.052 7 H 0.057 0.943 8 N -0.300 5.300 9 C 0.086 3.914 10 C -0.575 4.575 11 H 0.084 0.916 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.208 1.208 16 H -0.193 1.193 17 H -0.190 1.190 18 C -0.188 4.188 19 C 0.037 3.963 20 H 0.103 0.897 21 O -0.304 6.304 22 C -0.072 4.072 23 H 0.087 0.913 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.013 0.987 35 H -0.024 1.024 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.119 0.881 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.184 -12.039 -10.145 17.744 hybrid contribution -1.000 1.097 0.366 1.529 sum 7.184 -10.942 -9.780 16.339 Atomic orbital electron populations 1.21800 0.95874 1.01934 1.01326 1.21102 0.95140 0.93041 1.02806 1.22350 0.93993 0.96322 0.93640 1.21458 1.00995 0.98908 0.93926 1.21662 1.01054 1.00032 0.96691 1.22543 0.96363 0.88393 0.97869 0.94306 1.60497 1.56804 1.05682 1.07055 1.19176 0.88226 0.93410 0.90607 1.21507 1.28989 0.92471 1.14488 0.91633 1.25966 0.94636 1.04472 0.94589 1.70094 1.31628 1.37405 1.18312 0.85376 0.78351 0.78315 0.78190 1.20822 1.19330 1.18960 1.23518 0.97183 1.00338 0.97782 1.23525 0.90559 0.87717 0.94471 0.89738 1.87873 1.19130 1.30899 1.92523 1.22919 0.81404 1.02935 0.99921 0.91263 0.94640 0.92388 0.89906 0.92255 0.92175 0.91967 0.92762 0.91911 0.92102 0.84068 0.98667 1.02387 0.92622 0.92717 0.89279 0.94383 0.88072 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.58 71.98 0.69 -3.05 16 2 C -0.08 -2.10 4.35 30.60 0.13 -1.97 16 3 C -0.06 -1.79 0.51 -51.65 -0.03 -1.82 16 4 C -0.12 -3.06 4.00 30.59 0.12 -2.94 16 5 C -0.14 -2.88 9.26 71.98 0.67 -2.21 16 6 C 0.06 2.19 3.50 45.44 0.16 2.35 16 7 H 0.04 1.58 6.34 -2.39 -0.02 1.57 16 8 N -0.67 -29.22 6.27 -492.86 -3.09 -32.32 16 9 C 0.21 11.75 5.30 85.56 0.45 12.20 16 10 C -0.54 -30.96 9.32 25.60 0.24 -30.72 16 11 H 0.07 3.64 7.81 -2.91 -0.02 3.62 16 12 C 0.00 0.09 5.46 84.66 0.46 0.56 16 13 N -0.93 -57.27 13.29 21.45 0.28 -56.98 16 14 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 C -0.15 -5.08 7.36 31.12 0.23 -4.85 16 19 C 0.10 2.78 3.37 31.12 0.10 2.88 16 20 H 0.08 2.56 7.80 -2.39 -0.02 2.55 16 21 O -0.39 -10.06 9.87 -148.98 -1.47 -11.53 16 22 C 0.02 0.48 10.86 113.37 1.23 1.72 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.03 1.02 6.56 -2.39 -0.02 1.00 16 25 H 0.06 1.36 7.22 -2.39 -0.02 1.34 16 26 H 0.08 1.87 6.42 -2.39 -0.02 1.85 16 27 H 0.06 1.57 7.26 -2.39 -0.02 1.55 16 28 H 0.06 1.64 7.33 -2.39 -0.02 1.63 16 29 H 0.06 1.79 6.78 -2.39 -0.02 1.77 16 30 H 0.05 1.14 7.92 -2.39 -0.02 1.12 16 31 H 0.06 1.21 6.81 -2.39 -0.02 1.19 16 32 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.34 14.00 6.18 -89.70 -0.55 13.45 16 34 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 35 H -0.04 -2.47 8.13 -2.38 -0.02 -2.49 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.82 7.62 -2.39 -0.02 2.80 16 39 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -63.90 318.64 2.64 -61.26 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.43 Total: 20.88 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.46 Total: -27.85 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -2.81 Total: -89.30 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -1.47 Total: -11.53 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -63.90 2.64 -61.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632133.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.452 kcal (2) G-P(sol) polarization free energy of solvation -63.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds