Wall clock time and date at job start Sun Mar 29 2020 22:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47382 * 2 1 4 4 C 1.53005 * 112.84955 * 293.92955 * 3 2 1 5 5 C 1.52992 * 109.47355 * 310.32042 * 4 3 2 6 6 C 1.53780 * 113.61918 * 65.12799 * 3 2 1 7 7 H 1.08999 * 113.61101 * 25.34577 * 6 3 2 8 8 N 1.46894 * 113.61577 * 254.53172 * 6 3 2 9 9 C 1.46903 * 110.99868 * 154.99508 * 8 6 3 10 10 C 1.50706 * 109.46989 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00072 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00106 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99894 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46773 * 269.99815 * 14 12 10 16 16 H 1.48493 * 109.46995 * 29.99693 * 14 12 10 17 17 H 1.48502 * 109.46919 * 149.99964 * 14 12 10 18 18 C 1.53782 * 87.08462 * 139.98065 * 6 3 2 19 19 C 1.53785 * 113.61574 * 162.62880 * 3 2 1 20 20 H 1.09002 * 113.61022 * 334.56135 * 19 3 2 21 21 O 1.42893 * 113.61841 * 105.46960 * 19 3 2 22 22 C 1.42904 * 114.00288 * 210.00287 * 21 19 3 23 23 H 1.09001 * 109.47744 * 184.05668 * 1 2 3 24 24 H 1.08997 * 109.47403 * 304.06512 * 1 2 3 25 25 H 1.09000 * 109.46835 * 64.05687 * 1 2 3 26 26 H 1.08999 * 109.47065 * 239.99391 * 2 1 3 27 27 H 1.09002 * 109.46717 * 120.00446 * 2 1 3 28 28 H 1.09005 * 109.46892 * 70.32069 * 4 3 2 29 29 H 1.09006 * 109.47149 * 190.31610 * 4 3 2 30 30 H 1.09005 * 109.47154 * 306.21460 * 5 4 3 31 31 H 1.09006 * 109.47103 * 66.20733 * 5 4 3 32 32 H 1.08997 * 109.47320 * 186.20790 * 5 4 3 33 33 H 1.00904 * 111.00392 * 31.04594 * 8 6 3 34 34 H 1.09001 * 109.46950 * 60.00186 * 9 8 6 35 35 H 1.08991 * 109.47212 * 300.00065 * 9 8 6 36 36 H 0.97002 * 120.00054 * 180.02562 * 13 12 10 37 37 H 1.08998 * 113.61083 * 89.11724 * 18 6 3 38 38 H 1.09000 * 113.61480 * 220.02103 * 18 6 3 39 39 H 1.09001 * 109.47076 * 179.97438 * 22 21 19 40 40 H 1.08993 * 109.46565 * 299.99724 * 22 21 19 41 41 H 1.09002 * 109.46817 * 59.99287 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6989 2.1932 -1.2888 5 6 2.1076 1.3465 -2.4957 6 6 1.6867 2.2208 1.2783 7 1 1.5330 1.5835 2.1491 8 7 0.6087 3.2009 1.0914 9 6 -0.0822 3.4718 2.3592 10 6 -1.1785 4.4798 2.1285 11 1 -1.3456 4.8790 1.1390 12 6 -1.9681 4.8925 3.1807 13 7 -1.7650 4.4061 4.3856 14 14 -3.3275 6.1414 2.8946 15 1 -2.7886 7.5119 3.0858 16 1 -3.8446 6.0016 1.5097 17 1 -4.4296 5.9036 3.8610 18 6 3.0956 2.8324 1.2011 19 6 3.5133 1.5749 0.4207 20 1 3.8603 0.7611 1.0574 21 8 4.3977 1.8448 -0.6687 22 6 5.7172 1.3265 -0.4884 23 1 -0.3634 -1.0251 0.0727 24 1 -0.3634 0.5756 0.8513 25 1 -0.3633 0.4496 -0.9241 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.6263 2.3838 -1.3251 29 1 2.2373 3.1408 -1.3106 30 1 3.1560 1.0631 -2.4025 31 1 1.4908 0.4486 -2.5353 32 1 1.9671 1.9243 -3.4092 33 1 -0.0416 2.8929 0.3840 34 1 0.6295 3.8688 3.0831 35 1 -0.5132 2.5472 2.7429 36 1 -2.3208 4.6961 5.1258 37 1 3.1424 3.7479 0.6114 38 1 3.5843 2.9269 2.1708 39 1 6.3263 1.5728 -1.3582 40 1 6.1618 1.7675 0.4037 41 1 5.6696 0.2436 -0.3733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411632134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:11 Heat of formation + Delta-G solvation = -41.158483 kcal Electronic energy + Delta-G solvation = -18545.879320 eV Core-core repulsion = 15846.987729 eV Total energy + Delta-G solvation = -2698.891591 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24065 -36.63659 -34.13845 -32.77330 -31.51408 -30.99543 -27.00663 -26.20008 -25.28504 -23.50767 -22.61408 -21.34388 -20.73301 -17.87538 -16.74010 -16.09895 -15.64954 -15.26221 -14.69293 -14.62713 -14.15845 -13.88128 -13.25718 -12.97335 -12.67842 -12.50130 -12.36541 -11.95970 -11.77962 -11.58960 -11.36993 -11.19162 -11.15799 -10.93523 -10.76653 -10.65001 -10.56695 -10.20998 -10.07724 -9.92532 -9.59335 -9.07141 -9.00513 -8.45052 -7.22215 -6.00407 -4.01969 3.34164 3.39792 3.43691 3.91501 4.46032 4.73336 4.81749 4.95604 5.22188 5.27101 5.34812 5.36383 5.41415 5.42489 5.56264 5.59678 5.64202 5.64614 5.74478 5.86893 5.97837 6.02258 6.14353 6.18243 6.26763 6.32376 6.43527 6.50481 6.57732 6.64357 6.78726 6.86206 7.32866 7.42212 7.47230 7.83689 8.18413 8.46989 8.67587 9.07884 9.62994 11.10717 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.005698 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.447732 B = 4913.071369 C = 5151.266443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.077 4.077 4 C -0.080 4.080 5 C -0.148 4.148 6 C 0.074 3.926 7 H 0.063 0.937 8 N -0.671 5.671 9 C 0.194 3.806 10 C -0.512 4.512 11 H 0.062 0.938 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.274 1.274 17 H -0.288 1.288 18 C -0.140 4.140 19 C 0.067 3.933 20 H 0.079 0.921 21 O -0.368 6.368 22 C 0.030 3.970 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.331 0.669 34 H 0.026 0.974 35 H -0.015 1.015 36 H 0.261 0.739 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -9.170 -9.613 17.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.078 4.078 4 C -0.118 4.118 5 C -0.205 4.205 6 C -0.037 4.037 7 H 0.081 0.919 8 N -0.303 5.303 9 C 0.067 3.933 10 C -0.551 4.551 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.726 3.274 15 H -0.207 1.207 16 H -0.199 1.199 17 H -0.214 1.214 18 C -0.178 4.178 19 C 0.009 3.991 20 H 0.097 0.903 21 O -0.286 6.286 22 C -0.067 4.067 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.044 0.956 35 H 0.003 0.997 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.971 -8.509 -9.529 16.839 hybrid contribution -1.080 -0.310 0.545 1.249 sum 9.890 -8.819 -8.984 16.010 Atomic orbital electron populations 1.21761 0.95464 1.01189 1.02582 1.21534 0.96365 0.95563 1.01276 1.22487 0.93478 0.95084 0.96742 1.20949 1.00964 0.98455 0.91407 1.21818 1.01862 0.99403 0.97450 1.22701 0.93224 0.92669 0.95115 0.91898 1.60777 1.14729 1.42756 1.11993 1.19589 0.92765 0.94926 0.86025 1.21199 1.14681 1.24028 0.95167 0.92022 1.24980 0.97735 0.96748 0.95081 1.69966 1.40079 1.43909 0.99884 0.86503 0.81406 0.81598 0.77918 1.20651 1.19856 1.21366 1.23538 0.96478 0.98356 0.99457 1.23791 0.89192 0.97675 0.88446 0.90297 1.87968 1.20496 1.77955 1.42167 1.22722 0.85112 0.97419 1.01456 0.93271 0.92104 0.92493 0.91838 0.92624 0.91877 0.91037 0.91867 0.93578 0.93656 0.85020 0.95553 0.99727 0.92990 0.88645 0.92283 0.90200 0.94364 0.94573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.58 37.16 0.36 -1.74 16 2 C -0.11 -1.44 4.92 -26.74 -0.13 -1.57 16 3 C -0.08 -1.12 0.47 -153.70 -0.07 -1.19 16 4 C -0.08 -1.18 3.86 -26.73 -0.10 -1.28 16 5 C -0.15 -1.86 9.00 37.15 0.33 -1.53 16 6 C 0.07 1.32 2.79 -66.90 -0.19 1.13 16 7 H 0.06 1.18 7.82 -51.93 -0.41 0.78 16 8 N -0.67 -14.32 6.06 -107.13 -0.65 -14.97 16 9 C 0.19 5.10 5.28 -4.97 -0.03 5.07 16 10 C -0.51 -14.60 9.32 -34.44 -0.32 -14.92 16 11 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.14 -2.29 7.36 -25.92 -0.19 -2.48 16 19 C 0.07 0.93 3.73 -25.91 -0.10 0.84 16 20 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 21 O -0.37 -4.96 8.19 -35.23 -0.29 -5.25 16 22 C 0.03 0.30 10.85 101.05 1.10 1.40 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.98 7.43 -51.93 -0.39 0.60 16 25 H 0.06 0.76 7.34 -51.93 -0.38 0.38 16 26 H 0.06 0.76 6.45 -51.93 -0.34 0.43 16 27 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 28 H 0.06 0.97 6.14 -51.93 -0.32 0.65 16 29 H 0.07 1.16 7.21 -51.93 -0.37 0.79 16 30 H 0.06 0.81 6.47 -51.93 -0.34 0.47 16 31 H 0.05 0.54 6.86 -51.93 -0.36 0.19 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.33 6.83 6.88 -39.29 -0.27 6.55 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H -0.02 -0.42 8.13 -51.93 -0.42 -0.84 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.10 1.70 7.65 -51.93 -0.40 1.30 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 318.34 15.07 4.80 4.80 Total: -1.00 -29.71 318.34 -7.17 -36.89 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.31 Total: 2.75 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 0.56 Total: -14.77 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.09 Total: -41.29 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.29 Total: -5.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.71 -7.17 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.272 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds