Wall clock time and date at job start Sun Mar 29 2020 22:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52989 * 109.47382 * 2 1 4 4 C 1.53005 * 112.84955 * 293.92955 * 3 2 1 5 5 C 1.52992 * 109.47355 * 310.32042 * 4 3 2 6 6 C 1.53780 * 113.61918 * 65.12799 * 3 2 1 7 7 H 1.08999 * 113.61101 * 25.34577 * 6 3 2 8 8 N 1.46894 * 113.61577 * 254.53172 * 6 3 2 9 9 C 1.46903 * 110.99868 * 154.99508 * 8 6 3 10 10 C 1.50706 * 109.46989 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00072 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00106 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99894 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46773 * 269.99815 * 14 12 10 16 16 H 1.48493 * 109.46995 * 29.99693 * 14 12 10 17 17 H 1.48502 * 109.46919 * 149.99964 * 14 12 10 18 18 C 1.53782 * 87.08462 * 139.98065 * 6 3 2 19 19 C 1.53785 * 113.61574 * 162.62880 * 3 2 1 20 20 H 1.09002 * 113.61022 * 334.56135 * 19 3 2 21 21 O 1.42893 * 113.61841 * 105.46960 * 19 3 2 22 22 C 1.42904 * 114.00288 * 210.00287 * 21 19 3 23 23 H 1.09001 * 109.47744 * 184.05668 * 1 2 3 24 24 H 1.08997 * 109.47403 * 304.06512 * 1 2 3 25 25 H 1.09000 * 109.46835 * 64.05687 * 1 2 3 26 26 H 1.08999 * 109.47065 * 239.99391 * 2 1 3 27 27 H 1.09002 * 109.46717 * 120.00446 * 2 1 3 28 28 H 1.09005 * 109.46892 * 70.32069 * 4 3 2 29 29 H 1.09006 * 109.47149 * 190.31610 * 4 3 2 30 30 H 1.09005 * 109.47154 * 306.21460 * 5 4 3 31 31 H 1.09006 * 109.47103 * 66.20733 * 5 4 3 32 32 H 1.08997 * 109.47320 * 186.20790 * 5 4 3 33 33 H 1.00904 * 111.00392 * 31.04594 * 8 6 3 34 34 H 1.09001 * 109.46950 * 60.00186 * 9 8 6 35 35 H 1.08991 * 109.47212 * 300.00065 * 9 8 6 36 36 H 0.97002 * 120.00054 * 180.02562 * 13 12 10 37 37 H 1.08998 * 113.61083 * 89.11724 * 18 6 3 38 38 H 1.09000 * 113.61480 * 220.02103 * 18 6 3 39 39 H 1.09001 * 109.47076 * 179.97438 * 22 21 19 40 40 H 1.08993 * 109.46565 * 299.99724 * 22 21 19 41 41 H 1.09002 * 109.46817 * 59.99287 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6989 2.1932 -1.2888 5 6 2.1076 1.3465 -2.4957 6 6 1.6867 2.2208 1.2783 7 1 1.5330 1.5835 2.1491 8 7 0.6087 3.2009 1.0914 9 6 -0.0822 3.4718 2.3592 10 6 -1.1785 4.4798 2.1285 11 1 -1.3456 4.8790 1.1390 12 6 -1.9681 4.8925 3.1807 13 7 -1.7650 4.4061 4.3856 14 14 -3.3275 6.1414 2.8946 15 1 -2.7886 7.5119 3.0858 16 1 -3.8446 6.0016 1.5097 17 1 -4.4296 5.9036 3.8610 18 6 3.0956 2.8324 1.2011 19 6 3.5133 1.5749 0.4207 20 1 3.8603 0.7611 1.0574 21 8 4.3977 1.8448 -0.6687 22 6 5.7172 1.3265 -0.4884 23 1 -0.3634 -1.0251 0.0727 24 1 -0.3634 0.5756 0.8513 25 1 -0.3633 0.4496 -0.9241 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.6263 2.3838 -1.3251 29 1 2.2373 3.1408 -1.3106 30 1 3.1560 1.0631 -2.4025 31 1 1.4908 0.4486 -2.5353 32 1 1.9671 1.9243 -3.4092 33 1 -0.0416 2.8929 0.3840 34 1 0.6295 3.8688 3.0831 35 1 -0.5132 2.5472 2.7429 36 1 -2.3208 4.6961 5.1258 37 1 3.1424 3.7479 0.6114 38 1 3.5843 2.9269 2.1708 39 1 6.3263 1.5728 -1.3582 40 1 6.1618 1.7675 0.4037 41 1 5.6696 0.2436 -0.3733 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411632134.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:10 Heat of formation + Delta-G solvation = -60.031482 kcal Electronic energy + Delta-G solvation = -18546.697715 eV Core-core repulsion = 15846.987729 eV Total energy + Delta-G solvation = -2699.709986 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.49286 -37.74731 -35.95412 -34.36708 -33.24699 -32.09783 -28.70704 -27.41818 -26.47202 -24.95471 -23.95515 -23.05826 -22.06822 -19.27733 -18.39431 -17.61422 -16.80700 -16.76740 -16.35671 -15.80827 -15.47248 -15.20777 -14.64685 -14.48083 -14.23684 -13.75143 -13.64543 -13.48375 -13.04105 -12.95080 -12.91575 -12.62923 -12.56211 -12.35707 -12.26195 -12.08426 -11.92195 -11.70779 -11.52831 -11.21811 -11.07837 -10.89244 -10.64889 -10.11991 -9.04149 -8.22217 -6.33291 1.40478 1.42480 1.53651 2.39919 2.89316 3.11026 3.49677 3.55521 3.78394 3.93913 4.01097 4.17937 4.29844 4.39020 4.50963 4.58533 4.62734 4.65476 4.66133 4.84458 4.85310 4.92553 4.96876 5.04036 5.06798 5.09016 5.14519 5.25065 5.29396 5.34741 5.40457 5.49262 5.57340 5.64844 5.72240 6.05670 6.41574 6.51366 6.76984 6.91704 7.37918 8.89387 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031402 B = 0.005698 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.447732 B = 4913.071369 C = 5151.266443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.067 4.067 4 C -0.078 4.078 5 C -0.139 4.139 6 C 0.060 3.940 7 H 0.050 0.950 8 N -0.667 5.667 9 C 0.212 3.788 10 C -0.534 4.534 11 H 0.062 0.938 12 C 0.002 3.998 13 N -0.934 5.934 14 Si 0.972 3.028 15 H -0.274 1.274 16 H -0.263 1.263 17 H -0.281 1.281 18 C -0.144 4.144 19 C 0.086 3.914 20 H 0.100 0.900 21 O -0.381 6.381 22 C 0.022 3.978 23 H 0.066 0.934 24 H 0.027 0.973 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.334 0.666 34 H -0.006 1.006 35 H -0.041 1.041 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.118 -9.950 -11.197 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.068 4.068 4 C -0.116 4.116 5 C -0.196 4.196 6 C -0.051 4.051 7 H 0.068 0.932 8 N -0.299 5.299 9 C 0.084 3.916 10 C -0.572 4.572 11 H 0.081 0.919 12 C -0.196 4.196 13 N -0.575 5.575 14 Si 0.796 3.204 15 H -0.199 1.199 16 H -0.187 1.187 17 H -0.206 1.206 18 C -0.183 4.183 19 C 0.027 3.973 20 H 0.117 0.883 21 O -0.299 6.299 22 C -0.074 4.074 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.012 0.988 35 H -0.023 1.023 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.413 -9.299 -11.134 18.458 hybrid contribution -1.133 -0.077 1.044 1.543 sum 10.280 -9.376 -10.090 17.187 Atomic orbital electron populations 1.21732 0.96114 1.01723 1.01195 1.21529 0.95693 0.94374 1.02679 1.22396 0.94025 0.95614 0.94720 1.20901 0.99907 0.98158 0.92621 1.21738 1.02098 0.99434 0.96359 1.22825 0.92489 0.92855 0.96946 0.93173 1.60670 1.14808 1.44742 1.09662 1.19186 0.91758 0.93234 0.87388 1.21547 1.15572 1.24708 0.95417 0.91932 1.25939 1.00294 0.98739 0.94634 1.70096 1.41271 1.45247 1.00861 0.85344 0.78016 0.78666 0.78340 1.19949 1.18707 1.20617 1.23523 0.95740 0.99167 0.99854 1.23556 0.89097 0.96278 0.88334 0.88263 1.87946 1.21923 1.78460 1.41610 1.22959 0.83513 0.98422 1.02503 0.91471 0.95424 0.92222 0.89614 0.91903 0.93060 0.93025 0.91611 0.92347 0.92988 0.84646 0.98756 1.02341 0.92665 0.90306 0.92312 0.88538 0.94064 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.98 9.58 71.98 0.69 -3.29 16 2 C -0.11 -2.54 4.92 30.59 0.15 -2.39 16 3 C -0.07 -1.89 0.47 -51.66 -0.02 -1.91 16 4 C -0.08 -2.23 3.86 30.59 0.12 -2.11 16 5 C -0.14 -3.16 9.00 71.98 0.65 -2.52 16 6 C 0.06 2.18 2.79 45.44 0.13 2.31 16 7 H 0.05 1.97 7.82 -2.39 -0.02 1.95 16 8 N -0.67 -29.68 6.06 -492.86 -2.99 -32.67 16 9 C 0.21 11.74 5.28 85.56 0.45 12.19 16 10 C -0.53 -31.25 9.32 25.60 0.24 -31.01 16 11 H 0.06 3.57 7.81 -2.91 -0.02 3.54 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -57.49 13.29 21.45 0.28 -57.20 16 14 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 C -0.14 -4.80 7.36 31.12 0.23 -4.57 16 19 C 0.09 2.26 3.73 31.12 0.12 2.37 16 20 H 0.10 2.24 7.77 -2.39 -0.02 2.22 16 21 O -0.38 -9.45 8.19 -148.98 -1.22 -10.67 16 22 C 0.02 0.38 10.85 113.37 1.23 1.61 16 23 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 0.90 7.43 -2.39 -0.02 0.88 16 25 H 0.06 1.52 7.34 -2.39 -0.02 1.50 16 26 H 0.09 1.75 6.45 -2.39 -0.02 1.73 16 27 H 0.06 1.44 8.05 -2.39 -0.02 1.43 16 28 H 0.05 1.57 6.14 -2.38 -0.01 1.55 16 29 H 0.05 1.67 7.21 -2.38 -0.02 1.65 16 30 H 0.06 1.48 6.47 -2.38 -0.02 1.47 16 31 H 0.06 1.19 6.86 -2.38 -0.02 1.17 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.33 14.30 6.88 -89.69 -0.62 13.68 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H -0.04 -2.43 8.13 -2.39 -0.02 -2.45 16 36 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.08 2.88 7.65 -2.39 -0.02 2.87 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.08 318.34 2.91 -62.17 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.37 Total: 19.97 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 4.44 Total: -28.73 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -2.70 Total: -89.87 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.22 Total: -10.67 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -65.08 2.91 -62.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632134.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.143 kcal (2) G-P(sol) polarization free energy of solvation -65.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds