Wall clock time and date at job start Sun Mar 29 2020 22:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 C 1.53003 * 112.90559 * 53.07914 * 3 2 1 5 5 C 1.52991 * 109.47108 * 65.67195 * 4 3 2 6 6 C 1.53781 * 113.61577 * 281.82703 * 3 2 1 7 7 H 1.09003 * 113.61582 * 334.56185 * 6 3 2 8 8 N 1.46900 * 113.61659 * 105.38924 * 6 3 2 9 9 C 1.46898 * 110.99807 * 204.99918 * 8 6 3 10 10 C 1.50705 * 109.46914 * 179.97438 * 9 8 6 11 11 H 1.08000 * 120.00068 * 359.97438 * 10 9 8 12 12 C 1.37873 * 119.99932 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00311 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 120.00037 * 0.02562 * 12 10 9 15 15 H 1.48495 * 109.47013 * 89.99943 * 14 12 10 16 16 H 1.48501 * 109.46876 * 210.00094 * 14 12 10 17 17 H 1.48499 * 109.47014 * 329.99761 * 14 12 10 18 18 C 1.53783 * 87.08090 * 220.01903 * 6 3 2 19 19 C 1.53779 * 113.61198 * 184.32799 * 3 2 1 20 20 H 1.09008 * 113.61435 * 254.61191 * 19 3 2 21 21 O 1.42899 * 113.62040 * 25.43448 * 19 3 2 22 22 C 1.42898 * 114.00273 * 210.00026 * 21 19 3 23 23 H 1.08993 * 109.46914 * 174.43880 * 1 2 3 24 24 H 1.09003 * 109.46327 * 294.43798 * 1 2 3 25 25 H 1.08999 * 109.47239 * 54.43250 * 1 2 3 26 26 H 1.09010 * 109.46921 * 240.00486 * 2 1 3 27 27 H 1.08998 * 109.47516 * 120.00599 * 2 1 3 28 28 H 1.09003 * 109.46502 * 185.67054 * 4 3 2 29 29 H 1.09000 * 109.46689 * 305.67054 * 4 3 2 30 30 H 1.08999 * 109.47411 * 295.81609 * 5 4 3 31 31 H 1.09003 * 109.47694 * 55.81967 * 5 4 3 32 32 H 1.09006 * 109.47364 * 175.82159 * 5 4 3 33 33 H 1.00900 * 111.00066 * 81.04225 * 8 6 3 34 34 H 1.09004 * 109.47434 * 299.99733 * 9 8 6 35 35 H 1.08998 * 109.47229 * 59.99774 * 9 8 6 36 36 H 0.96996 * 120.00436 * 179.97438 * 13 12 10 37 37 H 1.08998 * 113.61541 * 270.88692 * 18 6 3 38 38 H 1.08998 * 113.61892 * 139.97922 * 18 6 3 39 39 H 1.08995 * 109.47216 * 299.99924 * 22 21 19 40 40 H 1.09001 * 109.46977 * 60.00107 * 22 21 19 41 41 H 1.09003 * 109.46826 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4403 2.2861 1.1268 5 6 1.9177 1.7473 2.4767 6 6 1.9731 2.1195 -1.3791 7 1 2.0047 1.4174 -2.2123 8 7 0.8867 3.1008 -1.5008 9 6 0.4845 3.2695 -2.9036 10 6 -0.6297 4.2807 -2.9885 11 1 -1.0020 4.7507 -2.0903 12 6 -1.1737 4.6058 -4.2130 13 7 -2.1457 5.4887 -4.2872 14 14 -0.5302 3.7923 -5.7666 15 1 -1.3020 2.5517 -6.0317 16 1 -0.6822 4.7243 -6.9127 17 1 0.9050 3.4543 -5.5903 18 6 3.3382 2.7467 -1.0501 19 6 3.5700 1.5548 -0.1063 20 1 4.0541 1.8268 0.8317 21 8 4.1838 0.4320 -0.7424 22 6 5.5106 0.1595 -0.2871 23 1 -0.3633 -1.0228 -0.0996 24 1 -0.3632 0.4252 0.9357 25 1 -0.3634 0.5977 -0.8359 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.7609 3.3220 1.0150 29 1 0.3526 2.2352 1.0792 30 1 1.5346 0.7371 2.6208 31 1 3.0074 1.7288 2.4959 32 1 1.5511 2.3921 3.2755 33 1 1.1502 3.9846 -1.0914 34 1 1.3370 3.6178 -3.4867 35 1 0.1390 2.3146 -3.2998 36 1 -2.5281 5.7177 -5.1487 37 1 3.2659 3.7043 -0.5345 38 1 4.0229 2.7720 -1.8978 39 1 6.1454 1.0245 -0.4791 40 1 5.4922 -0.0473 0.7830 41 1 5.9060 -0.7067 -0.8175 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411632135.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:13 Heat of formation + Delta-G solvation = -35.897921 kcal Electronic energy + Delta-G solvation = -18573.116593 eV Core-core repulsion = 15874.453117 eV Total energy + Delta-G solvation = -2698.663476 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34302 -36.67012 -34.40229 -32.67031 -31.51885 -31.03641 -27.35228 -26.39182 -25.32456 -23.37040 -22.88791 -21.07978 -20.93189 -18.04837 -16.89397 -16.14890 -15.73578 -15.14457 -14.80225 -14.39338 -14.11510 -13.81944 -13.77077 -13.11614 -12.72060 -12.61261 -12.54433 -12.03278 -11.91864 -11.75950 -11.53267 -11.35356 -11.25500 -10.93301 -10.77670 -10.74412 -10.50592 -10.15201 -10.11719 -9.83705 -9.48567 -9.22753 -9.13184 -8.55611 -7.31871 -6.02955 -4.00324 3.31594 3.38507 3.41911 3.70150 4.45184 4.73614 4.78536 4.94550 5.03312 5.22527 5.26181 5.30108 5.30969 5.43894 5.49643 5.54153 5.58534 5.69235 5.69600 5.76926 5.94203 6.03202 6.07090 6.16516 6.19487 6.27845 6.39004 6.44832 6.58054 6.66106 6.75690 6.86481 6.87471 7.10748 7.30654 7.66372 7.98199 8.41196 8.69582 9.05375 9.59828 11.10390 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026358 B = 0.006490 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.034240 B = 4313.207057 C = 4710.128850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.065 4.065 4 C -0.090 4.090 5 C -0.152 4.152 6 C 0.087 3.913 7 H 0.090 0.910 8 N -0.664 5.664 9 C 0.164 3.836 10 C -0.513 4.513 11 H 0.079 0.921 12 C 0.068 3.932 13 N -0.902 5.902 14 Si 0.876 3.124 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.268 1.268 18 C -0.190 4.190 19 C 0.068 3.932 20 H 0.070 0.930 21 O -0.365 6.365 22 C 0.032 3.968 23 H 0.040 0.960 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.335 0.665 34 H -0.017 1.017 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.027 -9.868 10.716 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.131 4.131 3 C -0.066 4.066 4 C -0.127 4.127 5 C -0.210 4.210 6 C -0.025 4.025 7 H 0.109 0.891 8 N -0.292 5.292 9 C 0.036 3.964 10 C -0.552 4.552 11 H 0.097 0.903 12 C -0.133 4.133 13 N -0.541 5.541 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.192 1.192 18 C -0.230 4.230 19 C 0.009 3.991 20 H 0.088 0.912 21 O -0.283 6.283 22 C -0.065 4.065 23 H 0.060 0.940 24 H 0.070 0.930 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.154 0.846 34 H 0.000 1.000 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 12.287 -10.329 10.559 19.214 hybrid contribution 1.298 0.298 -1.138 1.752 sum 13.585 -10.031 9.421 19.337 Atomic orbital electron populations 1.21779 0.95616 1.00583 1.02848 1.21200 0.95823 0.94876 1.01155 1.22324 0.91598 0.96086 0.96580 1.21145 1.01973 0.98001 0.91586 1.21829 1.00469 1.01106 0.97570 1.22999 0.88005 0.95458 0.96053 0.89150 1.60356 1.36334 1.12574 1.19946 1.20010 0.94964 0.96708 0.84686 1.21081 1.16962 1.22211 0.94914 0.90338 1.24899 0.94734 0.94873 0.98810 1.69900 1.25846 1.33159 1.25195 0.86846 0.79950 0.79565 0.83301 1.20180 1.21310 1.19248 1.24194 1.00760 0.97810 1.00205 1.23186 0.94518 0.86772 0.94582 0.91228 1.87883 1.28089 1.48319 1.63986 1.22757 0.84276 1.00573 0.98861 0.94044 0.93001 0.91043 0.91911 0.93087 0.92128 0.89778 0.92807 0.93551 0.93039 0.84630 0.99968 0.96119 0.92726 0.89398 0.91506 0.94336 0.94302 0.89913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.23 37.16 0.34 -1.85 16 2 C -0.09 -1.31 4.57 -26.73 -0.12 -1.43 16 3 C -0.06 -0.92 0.52 -153.70 -0.08 -1.00 16 4 C -0.09 -1.20 4.18 -26.73 -0.11 -1.31 16 5 C -0.15 -1.68 9.55 37.15 0.35 -1.33 16 6 C 0.09 1.48 3.35 -66.90 -0.22 1.26 16 7 H 0.09 1.70 7.75 -51.93 -0.40 1.30 16 8 N -0.66 -13.40 5.77 -107.13 -0.62 -14.02 16 9 C 0.16 4.01 4.35 -4.97 -0.02 3.98 16 10 C -0.51 -14.71 9.87 -34.44 -0.34 -15.05 16 11 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 12 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 14 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 18 C -0.19 -2.81 7.18 -25.91 -0.19 -2.99 16 19 C 0.07 0.90 3.63 -25.92 -0.09 0.81 16 20 H 0.07 0.82 6.43 -51.92 -0.33 0.49 16 21 O -0.36 -4.97 9.53 -35.23 -0.34 -5.30 16 22 C 0.03 0.32 10.85 101.05 1.10 1.41 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.71 6.83 -51.93 -0.35 0.36 16 25 H 0.07 1.24 7.97 -51.93 -0.41 0.82 16 26 H 0.06 0.95 7.56 -51.92 -0.39 0.55 16 27 H 0.05 0.66 7.36 -51.93 -0.38 0.27 16 28 H 0.06 0.82 6.95 -51.93 -0.36 0.46 16 29 H 0.08 1.26 6.50 -51.93 -0.34 0.92 16 30 H 0.05 0.58 7.25 -51.93 -0.38 0.21 16 31 H 0.05 0.48 6.64 -51.93 -0.34 0.13 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.34 6.59 7.82 -39.29 -0.31 6.28 16 34 H -0.02 -0.43 7.20 -51.93 -0.37 -0.81 16 35 H 0.02 0.52 7.56 -51.93 -0.39 0.13 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.09 1.22 7.30 -51.93 -0.38 0.84 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -30.29 316.55 -6.84 -37.13 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.28 Total: 2.89 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 0.52 Total: -15.60 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: 0.16 Total: -41.18 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.34 Total: -5.30 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.29 -6.84 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632135.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.231 kcal (2) G-P(sol) polarization free energy of solvation -30.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds