Wall clock time and date at job start Sun Mar 29 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53002 * 112.90801 * 292.40569 * 3 2 1 5 5 C 1.52998 * 109.47272 * 306.09394 * 4 3 2 6 6 C 1.53778 * 113.61541 * 161.15947 * 3 2 1 7 7 H 1.08997 * 113.61838 * 105.46671 * 6 3 2 8 8 O 1.42909 * 113.61221 * 334.56336 * 6 3 2 9 9 C 1.42901 * 113.99789 * 150.00250 * 8 6 3 10 10 C 1.54054 * 87.07717 * 220.02250 * 6 3 2 11 11 C 1.53773 * 113.61451 * 63.65706 * 3 2 1 12 12 H 1.09004 * 113.61853 * 254.61175 * 11 3 2 13 13 N 1.46900 * 113.61300 * 25.43568 * 11 3 2 14 14 C 1.46908 * 110.99810 * 203.47125 * 13 11 3 15 15 C 1.50699 * 109.46897 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99995 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00422 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99909 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 89.99800 * 19 17 15 21 21 H 1.48494 * 109.46902 * 210.00172 * 19 17 15 22 22 H 1.48504 * 109.46760 * 329.99703 * 19 17 15 23 23 H 1.09000 * 109.47371 * 185.41483 * 1 2 3 24 24 H 1.09005 * 109.46745 * 305.41200 * 1 2 3 25 25 H 1.09000 * 109.47552 * 65.40998 * 1 2 3 26 26 H 1.09006 * 109.46568 * 240.00385 * 2 1 3 27 27 H 1.08990 * 109.47471 * 120.00301 * 2 1 3 28 28 H 1.09001 * 109.47226 * 66.09321 * 4 3 2 29 29 H 1.08998 * 109.47561 * 186.09165 * 4 3 2 30 30 H 1.09000 * 109.47537 * 65.82378 * 5 4 3 31 31 H 1.09002 * 109.47038 * 185.82269 * 5 4 3 32 32 H 1.08999 * 109.47413 * 305.82263 * 5 4 3 33 33 H 1.08997 * 109.46899 * 60.00411 * 9 8 6 34 34 H 1.09000 * 109.46513 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46751 * 299.99903 * 9 8 6 36 36 H 1.09000 * 113.61019 * 270.92564 * 10 6 3 37 37 H 1.09001 * 113.69561 * 139.94697 * 10 6 3 38 38 H 1.00895 * 111.00546 * 79.51963 * 13 11 3 39 39 H 1.09001 * 109.46943 * 299.99714 * 14 13 11 40 40 H 1.08997 * 109.47270 * 59.99320 * 14 13 11 41 41 H 0.96999 * 120.00565 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7320 2.1831 -1.3030 5 6 2.2656 1.3748 -2.4874 6 6 3.5026 1.5788 0.4550 7 1 4.1971 1.7776 -0.3612 8 8 3.9373 0.5191 1.3097 9 6 5.3313 0.2230 1.2052 10 6 3.0653 2.8450 1.2158 11 6 1.6558 2.2317 1.2626 12 1 0.8585 2.9567 1.0988 13 7 1.4223 1.3829 2.4387 14 6 0.5553 2.0597 3.4126 15 6 0.3383 1.1603 4.6021 16 1 0.7981 0.1835 4.6315 17 6 -0.4472 1.5845 5.6529 18 7 -0.6370 0.7995 6.6908 19 14 -1.2418 3.2744 5.6023 20 1 -2.5803 3.1731 4.9672 21 1 -1.3882 3.7941 6.9856 22 1 -0.3885 4.1992 4.8137 23 1 -0.3634 -1.0231 0.0970 24 1 -0.3633 0.5955 0.8376 25 1 -0.3634 0.4276 -0.9344 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.6539 2.3074 -1.4042 29 1 2.2106 3.1622 -1.2863 30 1 1.7141 0.4379 -2.5659 31 1 2.1391 1.9488 -3.4054 32 1 3.3236 1.1618 -2.3349 33 1 5.9114 1.1073 1.4689 34 1 5.5815 -0.5920 1.8845 35 1 5.5642 -0.0727 0.1822 36 1 3.1257 3.7554 0.6193 37 1 3.5292 2.9489 2.1966 38 1 2.2945 1.1049 2.8630 39 1 1.0288 2.9859 3.7384 40 1 -0.4047 2.2861 2.9487 41 1 -1.1893 1.0980 7.4302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411632136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:14 Heat of formation + Delta-G solvation = -32.476300 kcal Electronic energy + Delta-G solvation = -18777.285960 eV Core-core repulsion = 16078.770856 eV Total energy + Delta-G solvation = -2698.515104 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33899 -36.42725 -34.42679 -32.63129 -31.52480 -30.77995 -27.02855 -26.44267 -25.24160 -23.78111 -22.59375 -21.15980 -20.68113 -17.91588 -16.71441 -16.36697 -15.70549 -15.01280 -14.46045 -14.45377 -14.07244 -13.91527 -13.68269 -12.89446 -12.71379 -12.59525 -12.48826 -12.09238 -11.94739 -11.66074 -11.51172 -11.21139 -11.11994 -10.99467 -10.81843 -10.60499 -10.44470 -10.00895 -9.94198 -9.74914 -9.42893 -9.14813 -9.07834 -8.52651 -7.23746 -5.99456 -3.96281 3.32531 3.39356 3.42233 3.80735 4.47304 4.63693 4.81060 5.05617 5.12412 5.23171 5.27074 5.33314 5.43286 5.47362 5.50676 5.56920 5.67186 5.75900 5.81228 5.91467 5.96570 5.99349 6.09640 6.14394 6.18056 6.29599 6.32569 6.44602 6.63660 6.68138 6.88604 7.06995 7.11669 7.17158 7.45884 7.71066 8.06220 8.56904 8.75570 9.10751 9.63281 11.14018 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.006908 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.696885 B = 4052.256856 C = 4367.725098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.075 4.075 4 C -0.098 4.098 5 C -0.149 4.149 6 C 0.075 3.925 7 H 0.063 0.937 8 O -0.352 6.352 9 C 0.032 3.968 10 C -0.197 4.197 11 C 0.087 3.913 12 H 0.071 0.929 13 N -0.649 5.649 14 C 0.165 3.835 15 C -0.510 4.510 16 H 0.079 0.921 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.268 1.268 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.041 0.959 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.346 0.654 39 H -0.019 1.019 40 H 0.019 0.981 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.797 2.713 -16.602 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.076 4.076 4 C -0.135 4.135 5 C -0.206 4.206 6 C 0.017 3.983 7 H 0.080 0.920 8 O -0.269 6.269 9 C -0.065 4.065 10 C -0.237 4.237 11 C -0.025 4.025 12 H 0.089 0.911 13 N -0.280 5.280 14 C 0.037 3.963 15 C -0.548 4.548 16 H 0.097 0.903 17 C -0.134 4.134 18 N -0.541 5.541 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.193 1.193 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.167 0.833 39 H -0.002 1.002 40 H 0.037 0.963 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.052 2.241 -16.552 18.542 hybrid contribution 0.413 1.773 0.326 1.850 sum 8.465 4.014 -16.226 18.736 Atomic orbital electron populations 1.21676 0.96122 1.01162 1.01107 1.21056 0.95624 0.94118 1.01392 1.22294 0.93589 0.97415 0.94346 1.21253 1.01423 0.97964 0.92893 1.21766 1.00954 1.00526 0.97349 1.23164 0.95616 0.87726 0.91806 0.91953 1.87979 1.23260 1.52925 1.62771 1.22766 0.82834 1.00270 1.00626 1.24266 1.00707 0.97311 1.01366 1.22559 0.93991 0.93113 0.92836 0.91072 1.60238 1.20278 1.39650 1.07799 1.20014 0.92011 0.93206 0.91037 1.21078 1.30453 1.03345 0.99962 0.90266 1.24899 0.96188 0.96973 0.95310 1.69902 1.39626 1.36608 1.08010 0.86845 0.80215 0.85362 0.77209 1.20239 1.21354 1.19311 0.93879 0.90810 0.94743 0.94052 0.89776 0.91206 0.92321 0.92220 0.93226 0.93140 0.94548 0.89650 0.94566 0.89955 0.91007 0.83345 1.00168 0.96270 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.52 37.16 0.35 -1.94 16 2 C -0.08 -1.31 4.43 -26.73 -0.12 -1.43 16 3 C -0.08 -1.08 0.51 -153.70 -0.08 -1.15 16 4 C -0.10 -1.15 5.00 -26.73 -0.13 -1.28 16 5 C -0.15 -1.51 9.25 37.16 0.34 -1.17 16 6 C 0.08 1.04 3.67 -25.78 -0.09 0.95 16 7 H 0.06 0.75 7.29 -51.93 -0.38 0.37 16 8 O -0.35 -5.35 7.80 -35.23 -0.27 -5.63 16 9 C 0.03 0.37 10.85 101.05 1.10 1.46 16 10 C -0.20 -2.92 7.13 -25.77 -0.18 -3.10 16 11 C 0.09 1.50 2.99 -66.90 -0.20 1.30 16 12 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 13 N -0.65 -13.69 4.54 -107.13 -0.49 -14.18 16 14 C 0.17 4.09 4.36 -4.97 -0.02 4.07 16 15 C -0.51 -14.86 9.87 -34.44 -0.34 -15.20 16 16 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 19 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.52 6.54 56.52 0.37 -6.15 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.39 6.82 -51.93 -0.35 1.03 16 25 H 0.03 0.48 7.35 -51.93 -0.38 0.10 16 26 H 0.04 0.57 6.42 -51.93 -0.33 0.24 16 27 H 0.08 1.53 6.57 -51.93 -0.34 1.19 16 28 H 0.07 0.84 7.40 -51.93 -0.38 0.45 16 29 H 0.06 0.64 7.31 -51.93 -0.38 0.26 16 30 H 0.06 0.63 6.81 -51.93 -0.35 0.27 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.50 7.47 -51.93 -0.39 0.11 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.05 7.61 -51.93 -0.40 0.65 16 37 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 38 H 0.35 7.53 6.98 -39.29 -0.27 7.26 16 39 H -0.02 -0.49 7.20 -51.93 -0.37 -0.86 16 40 H 0.02 0.48 7.56 -51.93 -0.39 0.09 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -30.61 313.38 -6.67 -37.28 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.26 Total: 3.47 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 0.53 Total: -15.59 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.29 Total: -41.61 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.27 Total: -5.63 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.61 -6.67 -37.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.801 kcal (2) G-P(sol) polarization free energy of solvation -30.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds