Wall clock time and date at job start Sun Mar 29 2020 22:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47130 * 2 1 4 4 C 1.53002 * 112.90801 * 292.40569 * 3 2 1 5 5 C 1.52998 * 109.47272 * 306.09394 * 4 3 2 6 6 C 1.53778 * 113.61541 * 161.15947 * 3 2 1 7 7 H 1.08997 * 113.61838 * 105.46671 * 6 3 2 8 8 O 1.42909 * 113.61221 * 334.56336 * 6 3 2 9 9 C 1.42901 * 113.99789 * 150.00250 * 8 6 3 10 10 C 1.54054 * 87.07717 * 220.02250 * 6 3 2 11 11 C 1.53773 * 113.61451 * 63.65706 * 3 2 1 12 12 H 1.09004 * 113.61853 * 254.61175 * 11 3 2 13 13 N 1.46900 * 113.61300 * 25.43568 * 11 3 2 14 14 C 1.46908 * 110.99810 * 203.47125 * 13 11 3 15 15 C 1.50699 * 109.46897 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00053 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99995 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00422 * 179.97438 * 17 15 14 19 19 Si 1.86808 * 119.99909 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46984 * 89.99800 * 19 17 15 21 21 H 1.48494 * 109.46902 * 210.00172 * 19 17 15 22 22 H 1.48504 * 109.46760 * 329.99703 * 19 17 15 23 23 H 1.09000 * 109.47371 * 185.41483 * 1 2 3 24 24 H 1.09005 * 109.46745 * 305.41200 * 1 2 3 25 25 H 1.09000 * 109.47552 * 65.40998 * 1 2 3 26 26 H 1.09006 * 109.46568 * 240.00385 * 2 1 3 27 27 H 1.08990 * 109.47471 * 120.00301 * 2 1 3 28 28 H 1.09001 * 109.47226 * 66.09321 * 4 3 2 29 29 H 1.08998 * 109.47561 * 186.09165 * 4 3 2 30 30 H 1.09000 * 109.47537 * 65.82378 * 5 4 3 31 31 H 1.09002 * 109.47038 * 185.82269 * 5 4 3 32 32 H 1.08999 * 109.47413 * 305.82263 * 5 4 3 33 33 H 1.08997 * 109.46899 * 60.00411 * 9 8 6 34 34 H 1.09000 * 109.46513 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46751 * 299.99903 * 9 8 6 36 36 H 1.09000 * 113.61019 * 270.92564 * 10 6 3 37 37 H 1.09001 * 113.69561 * 139.94697 * 10 6 3 38 38 H 1.00895 * 111.00546 * 79.51963 * 13 11 3 39 39 H 1.09001 * 109.46943 * 299.99714 * 14 13 11 40 40 H 1.08997 * 109.47270 * 59.99320 * 14 13 11 41 41 H 0.96999 * 120.00565 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7320 2.1831 -1.3030 5 6 2.2656 1.3748 -2.4874 6 6 3.5026 1.5788 0.4550 7 1 4.1971 1.7776 -0.3612 8 8 3.9373 0.5191 1.3097 9 6 5.3313 0.2230 1.2052 10 6 3.0653 2.8450 1.2158 11 6 1.6558 2.2317 1.2626 12 1 0.8585 2.9567 1.0988 13 7 1.4223 1.3829 2.4387 14 6 0.5553 2.0597 3.4126 15 6 0.3383 1.1603 4.6021 16 1 0.7981 0.1835 4.6315 17 6 -0.4472 1.5845 5.6529 18 7 -0.6370 0.7995 6.6908 19 14 -1.2418 3.2744 5.6023 20 1 -2.5803 3.1731 4.9672 21 1 -1.3882 3.7941 6.9856 22 1 -0.3885 4.1992 4.8137 23 1 -0.3634 -1.0231 0.0970 24 1 -0.3633 0.5955 0.8376 25 1 -0.3634 0.4276 -0.9344 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 0.6539 2.3074 -1.4042 29 1 2.2106 3.1622 -1.2863 30 1 1.7141 0.4379 -2.5659 31 1 2.1391 1.9488 -3.4054 32 1 3.3236 1.1618 -2.3349 33 1 5.9114 1.1073 1.4689 34 1 5.5815 -0.5920 1.8845 35 1 5.5642 -0.0727 0.1822 36 1 3.1257 3.7554 0.6193 37 1 3.5292 2.9489 2.1966 38 1 2.2945 1.1049 2.8630 39 1 1.0288 2.9859 3.7384 40 1 -0.4047 2.2861 2.9487 41 1 -1.1893 1.0980 7.4302 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411632136.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:14 Heat of formation + Delta-G solvation = -52.466273 kcal Electronic energy + Delta-G solvation = -18778.152790 eV Core-core repulsion = 16078.770856 eV Total energy + Delta-G solvation = -2699.381934 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52378 -37.54515 -36.09840 -34.44112 -33.09514 -31.94335 -28.84926 -27.55592 -26.35458 -24.94956 -23.97493 -22.87977 -21.99869 -19.39119 -18.49901 -17.69146 -16.84646 -16.36090 -16.04061 -15.75118 -15.53082 -15.19946 -14.90650 -14.64581 -14.23646 -13.75196 -13.70539 -13.49185 -13.34631 -13.00020 -12.76025 -12.58762 -12.49098 -12.22766 -12.17735 -11.98968 -11.91413 -11.67687 -11.49140 -11.15585 -10.99283 -10.79715 -10.60379 -10.19145 -8.89342 -8.29260 -6.32852 1.33028 1.34809 1.46012 2.33709 2.79058 3.04537 3.38132 3.70817 3.84035 4.03070 4.16434 4.26590 4.36255 4.49136 4.58803 4.61398 4.63011 4.66249 4.72827 4.80171 4.86152 4.89678 4.96127 5.00530 5.03864 5.09975 5.12417 5.20617 5.23317 5.41209 5.49503 5.52606 5.55853 5.76729 5.85770 6.05410 6.45987 6.68005 6.74459 6.88203 7.32198 8.87785 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.006908 C = 0.006409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.696885 B = 4052.256856 C = 4367.725098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.081 4.081 3 C -0.066 4.066 4 C -0.094 4.094 5 C -0.145 4.145 6 C 0.080 3.920 7 H 0.091 0.909 8 O -0.384 6.384 9 C 0.027 3.973 10 C -0.189 4.189 11 C 0.068 3.932 12 H 0.067 0.933 13 N -0.654 5.654 14 C 0.180 3.820 15 C -0.522 4.522 16 H 0.033 0.967 17 C 0.007 3.993 18 N -0.948 5.948 19 Si 0.951 3.049 20 H -0.266 1.266 21 H -0.280 1.280 22 H -0.253 1.253 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.339 0.661 39 H -0.021 1.021 40 H 0.020 0.980 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.367 4.707 -19.181 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.067 4.067 4 C -0.132 4.132 5 C -0.203 4.203 6 C 0.022 3.978 7 H 0.109 0.891 8 O -0.303 6.303 9 C -0.069 4.069 10 C -0.228 4.228 11 C -0.044 4.044 12 H 0.085 0.915 13 N -0.284 5.284 14 C 0.051 3.949 15 C -0.561 4.561 16 H 0.052 0.948 17 C -0.190 4.190 18 N -0.589 5.589 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.176 1.176 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.129 0.871 37 H 0.072 0.928 38 H 0.158 0.842 39 H -0.003 1.003 40 H 0.038 0.962 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.640 4.231 -19.160 21.440 hybrid contribution 0.283 1.039 1.132 1.562 sum 8.923 5.270 -18.029 20.795 Atomic orbital electron populations 1.21610 0.96662 1.00461 1.00867 1.20974 0.95059 0.95118 1.00696 1.22298 0.93795 0.96307 0.94266 1.21268 1.01600 0.98586 0.91742 1.21740 1.01039 1.00232 0.97244 1.23185 0.95827 0.86788 0.92023 0.89100 1.87956 1.25355 1.53417 1.63532 1.22933 0.81197 1.00831 1.01986 1.24238 0.98370 0.99023 1.01202 1.22746 0.95450 0.93743 0.92437 0.91516 1.60151 1.19650 1.40693 1.07924 1.19713 0.92784 0.92136 0.90233 1.21326 1.30250 1.02360 1.02120 0.94821 1.25876 0.96745 1.01753 0.94622 1.70059 1.40730 1.39124 1.09009 0.85655 0.79455 0.79633 0.77792 1.19062 1.20546 1.17646 0.94281 0.94078 0.92372 0.92035 0.93099 0.91490 0.90766 0.92763 0.91412 0.92601 0.93622 0.89540 0.92578 0.87062 0.92845 0.84188 1.00337 0.96218 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 9.52 71.98 0.69 -3.70 16 2 C -0.08 -2.44 4.43 30.59 0.14 -2.31 16 3 C -0.07 -1.75 0.51 -51.66 -0.03 -1.78 16 4 C -0.09 -1.89 5.00 30.59 0.15 -1.74 16 5 C -0.15 -2.37 9.25 71.98 0.67 -1.71 16 6 C 0.08 2.03 3.67 31.21 0.11 2.15 16 7 H 0.09 1.81 7.29 -2.39 -0.02 1.79 16 8 O -0.38 -11.43 7.80 -148.98 -1.16 -12.59 16 9 C 0.03 0.57 10.85 113.37 1.23 1.80 16 10 C -0.19 -5.22 7.13 31.22 0.22 -5.00 16 11 C 0.07 2.26 2.99 45.44 0.14 2.39 16 12 H 0.07 2.27 7.84 -2.38 -0.02 2.25 16 13 N -0.65 -28.31 4.54 -492.84 -2.24 -30.55 16 14 C 0.18 9.05 4.36 85.56 0.37 9.42 16 15 C -0.52 -31.66 9.87 25.60 0.25 -31.41 16 16 H 0.03 2.28 8.06 -2.91 -0.02 2.25 16 17 C 0.01 0.43 5.47 84.66 0.46 0.90 16 18 N -0.95 -61.06 13.96 21.45 0.30 -60.77 16 19 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.25 -11.39 6.54 99.48 0.65 -10.74 16 23 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.04 1.56 6.82 -2.38 -0.02 1.54 16 25 H 0.06 1.53 7.35 -2.39 -0.02 1.51 16 26 H 0.06 1.60 6.42 -2.38 -0.02 1.58 16 27 H 0.05 1.88 6.57 -2.39 -0.02 1.87 16 28 H 0.07 1.40 7.40 -2.39 -0.02 1.38 16 29 H 0.07 1.28 7.31 -2.39 -0.02 1.27 16 30 H 0.05 0.95 6.81 -2.39 -0.02 0.93 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.86 7.47 -2.39 -0.02 0.85 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 2.42 7.61 -2.39 -0.02 2.40 16 37 H 0.05 1.68 8.09 -2.39 -0.02 1.66 16 38 H 0.34 15.37 6.98 -89.70 -0.63 14.75 16 39 H -0.02 -1.05 7.20 -2.39 -0.02 -1.07 16 40 H 0.02 0.99 7.56 -2.39 -0.02 0.97 16 41 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -68.69 313.38 3.49 -65.19 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.30 Total: 22.15 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 4.41 Total: -30.97 kcal Atomic # 7 Polarization: -89.37 SS G_CDS: -1.94 Total: -91.31 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -1.16 Total: -12.59 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -68.69 3.49 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411632136.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.727 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds