Wall clock time and date at job start Sun Mar 29 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 H 1.09001 * 109.10314 * 55.87844 * 3 2 1 5 5 C 1.46256 * 109.11406 * 175.00289 * 3 2 1 6 6 N 1.47796 * 112.31806 * 179.90063 * 5 3 2 7 7 C 1.46898 * 111.00444 * 155.84716 * 6 5 3 8 8 H 1.08999 * 109.47212 * 175.94350 * 7 6 5 9 9 C 1.52998 * 109.46837 * 55.94349 * 7 6 5 10 10 C 1.53005 * 109.47164 * 295.94848 * 7 6 5 11 11 C 1.50708 * 109.46780 * 297.65966 * 10 7 6 12 12 H 1.08001 * 119.99890 * 5.07776 * 11 10 7 13 13 C 1.37877 * 119.99641 * 184.79970 * 11 10 7 14 14 N 1.31520 * 119.99655 * 180.02562 * 13 11 10 15 15 Si 1.86793 * 120.00090 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47266 * 89.99914 * 15 13 11 17 17 H 1.48502 * 109.47145 * 209.99867 * 15 13 11 18 18 H 1.48502 * 109.47271 * 329.99930 * 15 13 11 19 19 C 1.44010 * 109.45027 * 278.71497 * 6 5 3 20 20 C 1.54621 * 112.48409 * 94.30698 * 19 6 5 21 21 C 1.54577 * 110.90624 * 319.61268 * 20 19 6 22 22 O 1.39905 * 113.21706 * 319.28196 * 21 20 19 23 23 H 1.08997 * 109.46864 * 299.99228 * 1 2 3 24 24 H 1.08998 * 109.47483 * 59.99784 * 1 2 3 25 25 H 1.09002 * 109.46614 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46596 * 240.00451 * 2 1 3 27 27 H 1.08998 * 109.47483 * 120.00215 * 2 1 3 28 28 H 1.08998 * 108.91249 * 59.16979 * 5 3 2 29 29 H 1.08997 * 108.91163 * 300.63670 * 5 3 2 30 30 H 1.08999 * 109.47220 * 299.99996 * 9 7 6 31 31 H 1.08998 * 109.47120 * 59.99948 * 9 7 6 32 32 H 1.09000 * 109.47020 * 180.02562 * 9 7 6 33 33 H 1.08993 * 109.46912 * 177.66469 * 10 7 6 34 34 H 1.08999 * 109.46874 * 57.65837 * 10 7 6 35 35 H 0.96996 * 119.99365 * 180.02562 * 14 13 11 36 36 H 1.08998 * 108.87822 * 215.08039 * 19 6 5 37 37 H 1.09001 * 108.88230 * 333.53329 * 19 6 5 38 38 H 1.08999 * 109.18995 * 199.24170 * 20 19 6 39 39 H 1.09004 * 109.14955 * 79.94997 * 20 19 6 40 40 H 1.09003 * 108.73026 * 198.32192 * 21 20 19 41 41 H 1.08996 * 108.73400 * 80.25231 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6141 1.9714 0.8527 5 6 3.4976 1.4352 0.1204 6 7 4.0672 2.7990 0.1252 7 6 5.3741 2.8214 0.7955 8 1 5.8032 3.8206 0.7219 9 6 6.3092 1.8140 0.1235 10 6 5.1979 2.4493 2.2692 11 6 4.3230 3.4737 2.9448 12 1 3.8651 4.2604 2.3635 13 6 4.1027 3.4032 4.3040 14 7 3.3388 4.2969 4.8935 15 14 4.8890 2.0384 5.3081 16 1 6.2174 2.4865 5.7978 17 1 4.0189 1.7117 6.4663 18 1 5.0559 0.8319 4.4585 19 6 4.1731 3.2792 -1.2283 20 6 2.9457 4.1164 -1.6565 21 6 1.6371 3.4885 -1.1249 22 8 1.6169 2.0928 -1.2194 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.9185 0.8795 -0.7175 29 1 3.7729 0.9340 1.0483 30 1 5.8801 0.8147 0.1972 31 1 6.4347 2.0790 -0.9263 32 1 7.2788 1.8303 0.6212 33 1 6.1724 2.4254 2.7568 34 1 4.7306 1.4673 2.3425 35 1 3.1841 4.2475 5.8497 36 1 5.0680 3.8955 -1.3149 37 1 4.2690 2.4254 -1.8991 38 1 2.9050 4.1620 -2.7447 39 1 3.0456 5.1265 -1.2591 40 1 0.7993 3.8901 -1.6949 41 1 1.5130 3.7704 -0.0793 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411681214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:44 Heat of formation + Delta-G solvation = -48.330986 kcal Electronic energy + Delta-G solvation = -19058.383469 eV Core-core repulsion = 16359.180855 eV Total energy + Delta-G solvation = -2699.202615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.66770 -36.90543 -34.20091 -33.00195 -31.67290 -30.34291 -28.19776 -27.23276 -25.31083 -23.19851 -22.25093 -20.82379 -20.28486 -18.78629 -16.59101 -16.50121 -15.98482 -15.15155 -14.72824 -14.24948 -13.92009 -13.76423 -13.40661 -13.19868 -12.62424 -12.53703 -12.26488 -11.98739 -11.85847 -11.82282 -11.43393 -11.33807 -11.04946 -10.79543 -10.67798 -10.54669 -10.37273 -10.00869 -9.91067 -9.67567 -9.53419 -9.12818 -9.02539 -8.44912 -7.58105 -5.93713 -3.88025 3.32487 3.40972 3.42609 4.17289 4.39706 4.51352 5.18440 5.29863 5.33615 5.39664 5.41824 5.48245 5.60415 5.64332 5.66899 5.72114 5.87804 5.92409 5.96874 6.06353 6.07928 6.17152 6.21586 6.21930 6.29119 6.33423 6.40669 6.42648 6.46439 6.55927 6.56796 6.74265 7.07455 7.34527 7.72602 7.74730 7.85067 7.97762 8.70311 9.20717 9.69484 11.20093 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019680 B = 0.008755 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.428515 B = 3197.318039 C = 3627.258929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.075 0.925 5 C 0.030 3.970 6 N -0.504 5.504 7 C 0.096 3.904 8 H 0.077 0.923 9 C -0.186 4.186 10 C -0.007 4.007 11 C -0.492 4.492 12 H 0.081 0.919 13 C 0.062 3.938 14 N -0.906 5.906 15 Si 0.871 3.129 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.269 1.269 19 C 0.059 3.941 20 C -0.137 4.137 21 C 0.070 3.930 22 O -0.377 6.377 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.015 0.985 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -6.160 -11.687 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.036 3.964 4 H 0.093 0.907 5 C -0.098 4.098 6 N -0.226 5.226 7 C -0.011 4.011 8 H 0.095 0.905 9 C -0.245 4.245 10 C -0.045 4.045 11 C -0.530 4.530 12 H 0.099 0.901 13 C -0.138 4.138 14 N -0.547 5.547 15 Si 0.699 3.301 16 H -0.206 1.206 17 H -0.216 1.216 18 H -0.194 1.194 19 C -0.070 4.070 20 C -0.176 4.176 21 C -0.008 4.008 22 O -0.295 6.295 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.469 -5.885 -11.402 12.915 hybrid contribution 1.142 -0.996 0.445 1.580 sum -0.327 -6.882 -10.957 12.943 Atomic orbital electron populations 1.21685 0.95413 1.00949 1.02329 1.21566 0.96676 0.95125 1.02205 1.21264 0.94209 0.93518 0.87422 0.90688 1.21657 0.95579 0.90867 1.01661 1.61489 1.24994 1.21319 1.14808 1.21796 0.85765 0.97864 0.95711 0.90519 1.22596 1.01015 1.00838 1.00022 1.19717 0.96673 0.97434 0.90639 1.21063 1.27706 1.11854 0.92368 0.90081 1.25020 0.95278 0.95570 0.97889 1.69912 1.38987 1.35489 1.10271 0.86925 0.79419 0.83577 0.80141 1.20583 1.21604 1.19412 1.21818 0.97180 0.98067 0.89957 1.22658 0.95785 0.99726 0.99425 1.22052 0.95671 0.81553 1.01493 1.87628 1.86921 1.18477 1.36520 0.92719 0.92140 0.93266 0.91768 0.90764 0.95055 0.89380 0.92995 0.93765 0.92548 0.96684 0.96714 0.93059 0.92480 0.95046 0.92508 0.91246 0.91722 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.79 37.16 0.36 -1.50 16 2 C -0.12 -1.63 5.57 -26.73 -0.15 -1.78 16 3 C 0.09 1.55 2.32 -29.94 -0.07 1.48 16 4 H 0.08 1.42 7.46 -51.93 -0.39 1.04 16 5 C 0.03 0.52 2.91 -6.54 -0.02 0.51 16 6 N -0.50 -9.45 3.82 -231.17 -0.88 -10.33 16 7 C 0.10 1.88 2.13 -67.71 -0.14 1.73 16 8 H 0.08 1.54 7.87 -51.93 -0.41 1.13 16 9 C -0.19 -2.99 8.59 37.16 0.32 -2.67 16 10 C -0.01 -0.17 3.40 -27.88 -0.09 -0.26 16 11 C -0.49 -13.63 9.35 -34.44 -0.32 -13.95 16 12 H 0.08 2.47 7.91 -52.49 -0.42 2.06 16 13 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 14 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 15 Si 0.87 21.59 27.38 -169.99 -4.65 16.94 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 18 H -0.27 -6.39 6.68 56.52 0.38 -6.01 16 19 C 0.06 0.96 4.26 -4.51 -0.02 0.94 16 20 C -0.14 -2.06 6.52 -25.05 -0.16 -2.22 16 21 C 0.07 1.11 6.20 37.99 0.24 1.35 16 22 O -0.38 -6.24 9.46 -32.68 -0.31 -6.55 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 28 H 0.03 0.52 6.83 -51.93 -0.35 0.16 16 29 H 0.09 1.65 5.54 -51.93 -0.29 1.36 16 30 H 0.05 0.82 6.82 -51.93 -0.35 0.47 16 31 H 0.04 0.64 7.30 -51.93 -0.38 0.27 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.01 0.35 7.30 -51.93 -0.38 -0.03 16 34 H 0.01 0.35 5.44 -51.93 -0.28 0.06 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 0.89 7.31 -51.93 -0.38 0.51 16 37 H 0.03 0.50 7.11 -51.93 -0.37 0.13 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.10 7.25 -51.93 -0.38 0.72 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -29.71 307.37 -7.92 -37.62 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.32 Total: -0.55 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: -0.16 Total: -14.69 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.11 Total: -37.41 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.31 Total: -6.55 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.65 Total: 16.94 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.71 -7.92 -37.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411681214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.707 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds