Wall clock time and date at job start Sun Mar 29 2020 22:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 H 1.08998 * 109.08041 * 305.92336 * 3 2 1 5 5 C 1.54438 * 109.09079 * 186.91708 * 3 2 1 6 6 N 1.44802 * 109.06686 * 163.58528 * 5 3 2 7 7 C 1.46908 * 110.99673 * 219.85445 * 6 5 3 8 8 H 1.09002 * 109.46858 * 189.13384 * 7 6 5 9 9 C 1.52994 * 109.46994 * 309.13466 * 7 6 5 10 10 C 1.53002 * 109.46921 * 69.13241 * 7 6 5 11 11 C 1.50700 * 109.47099 * 63.64952 * 10 7 6 12 12 H 1.08003 * 120.00325 * 355.18623 * 11 10 7 13 13 C 1.37882 * 120.00098 * 175.17756 * 11 10 7 14 14 N 1.31513 * 119.99519 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99982 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47225 * 90.00118 * 15 13 11 17 17 H 1.48504 * 109.46890 * 210.00380 * 15 13 11 18 18 H 1.48503 * 109.47354 * 330.00108 * 15 13 11 19 19 C 1.48064 * 114.17420 * 93.48310 * 6 5 3 20 20 C 1.53368 * 112.15995 * 318.17091 * 19 6 5 21 21 C 1.51027 * 111.73363 * 318.80130 * 20 19 6 22 22 O 1.36473 * 109.08878 * 64.99809 * 3 2 1 23 23 H 1.08997 * 109.47059 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47084 * 300.00142 * 1 2 3 25 25 H 1.09003 * 109.46746 * 60.00285 * 1 2 3 26 26 H 1.09006 * 109.47046 * 239.99939 * 2 1 3 27 27 H 1.08998 * 109.46980 * 120.00136 * 2 1 3 28 28 H 1.09007 * 109.53708 * 283.45777 * 5 3 2 29 29 H 1.08995 * 109.53939 * 43.69952 * 5 3 2 30 30 H 1.09000 * 109.46968 * 185.90284 * 9 7 6 31 31 H 1.08998 * 109.47221 * 305.90150 * 9 7 6 32 32 H 1.09003 * 109.47763 * 65.90660 * 9 7 6 33 33 H 1.08999 * 109.47105 * 183.64798 * 10 7 6 34 34 H 1.08996 * 109.47334 * 303.65266 * 10 7 6 35 35 H 0.96998 * 119.99712 * 179.97438 * 14 13 11 36 36 H 1.09002 * 108.93991 * 78.85798 * 19 6 5 37 37 H 1.08990 * 108.94155 * 197.56669 * 19 6 5 38 38 H 1.08998 * 109.02603 * 79.37974 * 20 19 6 39 39 H 1.08994 * 109.02317 * 198.22062 * 20 19 6 40 40 H 1.09000 * 109.77540 * 332.34257 * 21 20 19 41 41 H 1.09000 * 109.76905 * 211.55967 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5890 1.9799 -0.8342 5 6 3.5744 1.4358 -0.1758 6 7 4.0121 2.7610 -0.5618 7 6 5.0700 2.6905 -1.5787 8 1 5.4927 3.6833 -1.7326 9 6 6.1686 1.7361 -1.1063 10 6 4.4799 2.1777 -2.8939 11 6 3.4609 3.1632 -3.4052 12 1 3.1979 4.0257 -2.8107 13 6 2.8643 2.9640 -4.6322 14 7 3.1842 1.9137 -5.3561 15 14 1.6018 4.1860 -5.2663 16 1 2.2876 5.2447 -6.0499 17 1 0.6243 3.4820 -6.1349 18 1 0.8896 4.8026 -4.1184 19 6 4.4233 3.6183 0.5731 20 6 3.4765 3.4841 1.7722 21 6 2.0307 3.4264 1.3395 22 8 1.6749 2.0450 1.1688 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.0479 1.1552 0.7652 29 1 3.8494 0.7207 -0.9510 30 1 7.0008 1.7636 -1.8097 31 1 6.5165 2.0424 -0.1198 32 1 5.7713 0.7225 -1.0530 33 1 5.2761 2.0638 -3.6295 34 1 4.0001 1.2136 -2.7255 35 1 2.7643 1.7733 -6.2191 36 1 5.4294 3.3361 0.8834 37 1 4.4328 4.6579 0.2459 38 1 3.7209 2.5726 2.3177 39 1 3.6160 4.3400 2.4325 40 1 1.9066 3.9583 0.3962 41 1 1.3987 3.8781 2.1041 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411681216.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:45 Heat of formation + Delta-G solvation = -71.665064 kcal Electronic energy + Delta-G solvation = -19084.035400 eV Core-core repulsion = 16383.820944 eV Total energy + Delta-G solvation = -2700.214456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02780 -38.38635 -35.44064 -34.83278 -33.31354 -31.40008 -29.32977 -28.44999 -26.89145 -25.13023 -23.86111 -21.97348 -21.74910 -20.15851 -18.35003 -17.81565 -17.48367 -16.68842 -16.24582 -15.96504 -15.63432 -14.88547 -14.77714 -14.44300 -14.10060 -13.90336 -13.57410 -13.48999 -13.19080 -13.11422 -12.92929 -12.56868 -12.46769 -12.31166 -12.13992 -12.02173 -11.89168 -11.80010 -11.44225 -11.17958 -11.08091 -11.03983 -10.47005 -10.27689 -8.79300 -8.09165 -6.13044 1.39923 1.40990 1.51797 2.46777 2.92278 3.02915 3.26334 3.95821 4.00020 4.06136 4.20306 4.27135 4.33560 4.39381 4.43882 4.46855 4.55943 4.65254 4.67889 4.78752 4.86528 4.92009 4.98633 5.00832 5.04181 5.14015 5.16591 5.22441 5.23076 5.29353 5.37401 5.47484 5.52203 5.70965 5.91183 6.33845 6.51860 6.55265 6.80795 7.00429 7.52312 9.02756 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.009231 C = 0.007895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.129264 B = 3032.681228 C = 3545.536576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.115 3.885 4 H 0.021 0.979 5 C 0.044 3.956 6 N -0.549 5.549 7 C 0.099 3.901 8 H 0.063 0.937 9 C -0.171 4.171 10 C 0.040 3.960 11 C -0.494 4.494 12 H 0.056 0.944 13 C -0.003 4.003 14 N -0.938 5.938 15 Si 0.950 3.050 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.056 3.944 20 C -0.142 4.142 21 C 0.070 3.930 22 O -0.388 6.388 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.049 0.951 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.258 0.742 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 0.392 14.911 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C 0.054 3.946 4 H 0.039 0.961 5 C -0.084 4.084 6 N -0.273 5.273 7 C -0.009 4.009 8 H 0.081 0.919 9 C -0.229 4.229 10 C 0.003 3.997 11 C -0.532 4.532 12 H 0.074 0.926 13 C -0.199 4.199 14 N -0.580 5.580 15 Si 0.777 3.223 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.194 1.194 19 C -0.070 4.070 20 C -0.180 4.180 21 C -0.006 4.006 22 O -0.307 6.307 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.062 0.938 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.871 0.453 14.706 14.738 hybrid contribution 0.369 0.224 -0.949 1.042 sum -0.502 0.677 13.757 13.783 Atomic orbital electron populations 1.21646 0.94701 1.02008 1.01478 1.21545 0.97257 0.93893 1.02366 1.21146 0.93137 0.93760 0.86508 0.96140 1.22548 0.96439 0.90573 0.98878 1.60614 1.39646 1.14391 1.12661 1.21591 0.89288 0.97991 0.92065 0.91917 1.22387 0.99377 0.99983 1.01197 1.19029 0.94417 0.95077 0.91224 1.21429 1.21737 1.08574 1.01497 0.92609 1.25798 0.99250 0.97251 0.97598 1.70085 1.45222 1.29766 1.12973 0.85663 0.79221 0.79254 0.78188 1.20139 1.21296 1.19382 1.22427 0.97067 0.97300 0.90251 1.21976 0.95130 1.03802 0.97111 1.22458 0.95518 0.81565 1.01056 1.86319 1.79706 1.25981 1.38718 0.91253 0.92014 0.94351 0.91665 0.90309 0.93594 0.92066 0.92342 0.91863 0.93217 0.98889 0.98901 0.93355 0.94321 0.91462 0.91371 0.87924 0.93828 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.80 71.98 0.71 -3.21 16 2 C -0.11 -3.44 5.59 30.60 0.17 -3.27 16 3 C 0.11 4.06 2.43 31.08 0.08 4.13 16 4 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 5 C 0.04 1.59 3.42 87.19 0.30 1.88 16 6 N -0.55 -20.46 3.47 -869.57 -3.02 -23.47 16 7 C 0.10 4.01 2.21 44.91 0.10 4.11 16 8 H 0.06 2.59 7.98 -2.39 -0.02 2.57 16 9 C -0.17 -5.74 8.60 71.98 0.62 -5.12 16 10 C 0.04 2.07 4.39 29.85 0.13 2.20 16 11 C -0.49 -28.04 8.81 25.60 0.23 -27.81 16 12 H 0.06 3.15 7.71 -2.91 -0.02 3.13 16 13 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 14 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 15 Si 0.95 45.78 29.54 68.60 2.03 47.80 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 19 C 0.06 1.65 5.32 86.20 0.46 2.10 16 20 C -0.14 -3.42 5.39 30.08 0.16 -3.26 16 21 C 0.07 1.91 6.49 71.34 0.46 2.37 16 22 O -0.39 -12.39 9.12 -99.00 -0.90 -13.30 16 23 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 2.10 8.02 -2.38 -0.02 2.08 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.05 1.48 7.01 -2.38 -0.02 1.46 16 29 H 0.06 2.43 4.78 -2.39 -0.01 2.42 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.82 6.72 -2.39 -0.02 1.80 16 32 H 0.05 1.69 6.62 -2.39 -0.02 1.68 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H -0.01 -0.40 6.48 -2.39 -0.02 -0.42 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.04 1.04 6.60 -2.39 -0.02 1.03 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 1.66 7.29 -2.39 -0.02 1.64 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.04 1.43 7.61 -2.39 -0.02 1.41 16 41 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -64.10 310.82 3.23 -60.87 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.97 Total: 11.05 kcal Atomic # 6 Polarization: -29.45 SS G_CDS: 3.87 Total: -25.58 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.73 Total: -80.84 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -0.90 Total: -13.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -64.10 3.23 -60.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411681216.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.798 kcal (2) G-P(sol) polarization free energy of solvation -64.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds