Wall clock time and date at job start Sun Mar 29 2020 22:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46845 * 2 1 4 4 H 1.08998 * 109.88080 * 55.94000 * 3 2 1 5 5 C 1.51048 * 109.83537 * 176.87996 * 3 2 1 6 6 N 1.47393 * 111.55775 * 213.53873 * 5 3 2 7 7 C 1.46905 * 110.99638 * 193.27125 * 6 5 3 8 8 H 1.08991 * 109.46958 * 313.22462 * 7 6 5 9 9 C 1.52999 * 109.47358 * 73.23185 * 7 6 5 10 10 C 1.53006 * 109.46858 * 193.22766 * 7 6 5 11 11 C 1.50697 * 109.46930 * 64.99727 * 10 7 6 12 12 H 1.08001 * 120.00212 * 0.02562 * 11 10 7 13 13 C 1.37877 * 119.99819 * 179.97438 * 11 10 7 14 14 N 1.31515 * 120.00110 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99926 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46884 * 90.00035 * 15 13 11 17 17 H 1.48498 * 109.46945 * 210.00116 * 15 13 11 18 18 H 1.48496 * 109.47043 * 330.00028 * 15 13 11 19 19 C 1.48032 * 113.47255 * 319.08391 * 6 5 3 20 20 C 1.50980 * 113.13021 * 318.18448 * 19 6 5 21 21 C 1.54708 * 109.07681 * 92.04806 * 20 19 6 22 22 O 1.36615 * 110.79484 * 286.64287 * 21 20 19 23 23 H 1.09004 * 109.47061 * 60.00064 * 1 2 3 24 24 H 1.08992 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47024 * 299.99996 * 1 2 3 26 26 H 1.08999 * 109.46803 * 240.00745 * 2 1 3 27 27 H 1.08996 * 109.47061 * 120.00218 * 2 1 3 28 28 H 1.09006 * 109.05791 * 93.00234 * 5 3 2 29 29 H 1.08997 * 109.00376 * 334.03948 * 5 3 2 30 30 H 1.08995 * 109.47359 * 59.99330 * 9 7 6 31 31 H 1.08993 * 109.47140 * 179.97438 * 9 7 6 32 32 H 1.09008 * 109.46798 * 300.00110 * 9 7 6 33 33 H 1.08993 * 109.46728 * 184.99955 * 10 7 6 34 34 H 1.09001 * 109.46984 * 305.00179 * 10 7 6 35 35 H 0.97003 * 120.00185 * 180.02562 * 14 13 11 36 36 H 1.09007 * 108.74869 * 197.24326 * 19 6 5 37 37 H 1.08998 * 108.74936 * 79.12636 * 19 6 5 38 38 H 1.08998 * 109.53992 * 332.16381 * 20 19 6 39 39 H 1.09003 * 109.53585 * 211.92173 * 20 19 6 40 40 H 1.08997 * 109.21263 * 166.30937 * 21 20 19 41 41 H 1.08994 * 109.21404 * 46.98177 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6223 1.9834 0.8492 5 6 3.5485 1.4529 0.0773 6 7 4.0437 2.6128 0.8402 7 6 5.4892 2.7910 0.6479 8 1 5.9921 1.8310 0.7632 9 6 5.7532 3.3400 -0.7556 10 6 6.0246 3.7755 1.6896 11 6 5.8758 3.1806 3.0662 12 1 5.4430 2.1984 3.1861 13 6 6.2931 3.8898 4.1725 14 7 6.8206 5.0857 4.0264 15 14 6.1093 3.1520 5.8788 16 1 7.3325 2.3820 6.2195 17 1 5.9173 4.2405 6.8706 18 1 4.9321 2.2472 5.9027 19 6 3.3114 3.8660 0.5495 20 6 3.0148 4.0526 -0.9191 21 6 1.6219 3.4571 -1.2333 22 8 1.6646 2.0917 -1.2230 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.9564 1.4907 -0.9328 29 1 3.8853 0.5372 0.5631 30 1 5.2502 4.3000 -0.8708 31 1 6.8256 3.4726 -0.8980 32 1 5.3716 2.6386 -1.4977 33 1 7.0776 3.9761 1.4923 34 1 5.4606 4.7065 1.6333 35 1 7.1145 5.5845 4.8047 36 1 3.9086 4.7093 0.8963 37 1 2.3699 3.8571 1.0987 38 1 3.7725 3.5402 -1.5120 39 1 3.0194 5.1157 -1.1597 40 1 1.2995 3.7984 -2.2170 41 1 0.9082 3.7993 -0.4840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411681217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:47 Heat of formation + Delta-G solvation = -45.887222 kcal Electronic energy + Delta-G solvation = -18870.806283 eV Core-core repulsion = 16171.709638 eV Total energy + Delta-G solvation = -2699.096645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09792 -36.98896 -34.34084 -32.96048 -31.36418 -30.63389 -27.51496 -27.02681 -25.83320 -23.37131 -22.19691 -21.25854 -20.41879 -18.63213 -16.49679 -16.26994 -16.05157 -15.72764 -15.05919 -14.39348 -14.03746 -13.76053 -13.42729 -13.00351 -12.70721 -12.47159 -12.09085 -11.95907 -11.72901 -11.63126 -11.50316 -11.16779 -11.13994 -11.03273 -10.71970 -10.58549 -10.47257 -10.27037 -9.94490 -9.74535 -9.25267 -9.12449 -8.94446 -8.24339 -7.40333 -5.88038 -3.85625 3.39186 3.45338 3.50424 3.84212 4.47626 4.57302 4.95766 5.05370 5.14135 5.19427 5.31290 5.44166 5.49474 5.58894 5.61246 5.66375 5.77703 5.83074 5.95768 5.97301 6.00491 6.03175 6.07215 6.14537 6.20787 6.24754 6.36875 6.41068 6.53305 6.67518 6.72176 7.01438 7.54747 7.62886 7.77146 7.96424 8.05786 8.13322 8.59555 9.20078 9.75897 11.23962 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025246 B = 0.006977 C = 0.006077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.830130 B = 4012.247236 C = 4606.068997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.094 3.906 4 H 0.072 0.928 5 C 0.029 3.971 6 N -0.515 5.515 7 C 0.088 3.912 8 H 0.067 0.933 9 C -0.186 4.186 10 C 0.030 3.970 11 C -0.489 4.489 12 H 0.060 0.940 13 C 0.050 3.950 14 N -0.904 5.904 15 Si 0.889 3.111 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.274 1.274 19 C 0.052 3.948 20 C -0.207 4.207 21 C 0.079 3.921 22 O -0.386 6.386 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.018 0.982 34 H 0.020 0.980 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 -5.772 -10.300 15.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C 0.038 3.962 4 H 0.090 0.910 5 C -0.099 4.099 6 N -0.238 5.238 7 C -0.020 4.020 8 H 0.086 0.914 9 C -0.245 4.245 10 C -0.007 4.007 11 C -0.528 4.528 12 H 0.078 0.922 13 C -0.149 4.149 14 N -0.545 5.545 15 Si 0.718 3.282 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.199 1.199 19 C -0.076 4.076 20 C -0.246 4.246 21 C 0.001 3.999 22 O -0.304 6.304 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.190 -5.845 -9.850 15.331 hybrid contribution 0.241 0.202 0.390 0.501 sum -9.949 -5.644 -9.460 14.843 Atomic orbital electron populations 1.21710 0.95546 1.01236 1.02073 1.21540 0.96367 0.94494 1.02709 1.22053 0.93953 0.93592 0.86645 0.91006 1.22509 0.94664 0.95612 0.97139 1.62266 1.04056 1.02329 1.55183 1.21898 0.86458 1.00486 0.93158 0.91446 1.22756 1.01535 1.00879 0.99322 1.19220 0.95395 0.93453 0.92584 1.21170 1.38104 1.02667 0.90826 0.92207 1.25008 0.95911 0.95014 0.98993 1.69963 1.43027 1.11868 1.29686 0.86638 0.78305 0.78678 0.84622 1.21011 1.21576 1.19917 1.21977 0.99079 0.93983 0.92595 1.23340 0.99167 1.01890 1.00195 1.21779 0.95443 0.81785 1.00940 1.86352 1.88839 1.19404 1.35853 0.92238 0.92965 0.92948 0.91329 0.90275 0.94166 0.90621 0.92266 0.92832 0.94008 0.96389 0.96225 0.93343 0.89629 0.92214 0.89654 0.91171 0.89809 0.94832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.81 37.16 0.36 -1.20 16 2 C -0.11 -1.34 5.48 -26.72 -0.15 -1.49 16 3 C 0.09 1.35 2.28 -27.71 -0.06 1.28 16 4 H 0.07 1.11 6.78 -51.93 -0.35 0.76 16 5 C 0.03 0.46 4.57 -4.54 -0.02 0.44 16 6 N -0.52 -9.85 4.44 -227.72 -1.01 -10.86 16 7 C 0.09 1.81 2.23 -67.71 -0.15 1.66 16 8 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 9 C -0.19 -3.25 7.46 37.16 0.28 -2.97 16 10 C 0.03 0.77 4.39 -27.88 -0.12 0.65 16 11 C -0.49 -13.75 8.84 -34.44 -0.30 -14.05 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 13 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.10 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.05 0.91 4.52 -4.21 -0.02 0.89 16 20 C -0.21 -3.01 4.40 -26.85 -0.12 -3.13 16 21 C 0.08 1.04 6.43 38.06 0.24 1.28 16 22 O -0.39 -5.55 9.18 -21.73 -0.20 -5.75 16 23 H 0.06 0.65 7.84 -51.93 -0.41 0.25 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 28 H 0.04 0.66 5.62 -51.93 -0.29 0.37 16 29 H 0.08 1.20 7.67 -51.93 -0.40 0.80 16 30 H 0.06 1.02 5.59 -51.93 -0.29 0.73 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.67 5.84 -51.92 -0.30 0.36 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.53 6.07 -51.93 -0.32 0.21 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 36 H 0.09 1.72 5.63 -51.92 -0.29 1.43 16 37 H 0.06 1.04 6.54 -51.93 -0.34 0.70 16 38 H 0.09 1.31 4.11 -51.93 -0.21 1.10 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.43 7.72 -51.93 -0.40 0.03 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -29.80 302.14 -8.04 -37.84 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.94 Total: -0.99 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.16 Total: -15.30 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.27 Total: -37.45 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.20 Total: -5.75 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.80 -8.04 -37.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411681217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.046 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds