Wall clock time and date at job start Sun Mar 29 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47015 * 2 1 4 4 H 1.08994 * 109.58806 * 305.17906 * 3 2 1 5 5 C 1.54271 * 109.52823 * 185.00143 * 3 2 1 6 6 N 1.40442 * 111.68822 * 162.87892 * 5 3 2 7 7 C 1.46901 * 111.00005 * 188.29724 * 6 5 3 8 8 H 1.08995 * 109.46814 * 47.82407 * 7 6 5 9 9 C 1.52994 * 109.47371 * 287.82065 * 7 6 5 10 10 C 1.53005 * 109.46746 * 167.81917 * 7 6 5 11 11 C 1.50700 * 109.47385 * 297.83720 * 10 7 6 12 12 H 1.07998 * 119.99666 * 0.02562 * 11 10 7 13 13 C 1.37869 * 119.99938 * 179.97438 * 11 10 7 14 14 N 1.31515 * 119.99802 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00296 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46953 * 269.99591 * 15 13 11 17 17 H 1.48501 * 109.47173 * 29.99248 * 15 13 11 18 18 H 1.48500 * 109.47501 * 149.99722 * 15 13 11 19 19 C 1.47638 * 114.31377 * 61.81131 * 6 5 3 20 20 C 1.50901 * 108.76921 * 279.99838 * 19 6 5 21 21 C 1.53613 * 111.71382 * 91.01103 * 20 19 6 22 22 O 1.40627 * 109.52593 * 65.35549 * 3 2 1 23 23 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46669 * 299.99618 * 1 2 3 25 25 H 1.08997 * 109.47398 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.46987 * 240.00795 * 2 1 3 27 27 H 1.08997 * 109.47398 * 120.00175 * 2 1 3 28 28 H 1.08998 * 109.03930 * 42.31294 * 5 3 2 29 29 H 1.09001 * 109.03828 * 283.44550 * 5 3 2 30 30 H 1.08995 * 109.47430 * 299.99964 * 9 7 6 31 31 H 1.09001 * 109.46800 * 60.00088 * 9 7 6 32 32 H 1.08997 * 109.47123 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.46931 * 177.83896 * 10 7 6 34 34 H 1.08996 * 109.47134 * 57.84522 * 10 7 6 35 35 H 0.97007 * 120.00094 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.59030 * 39.78440 * 19 6 5 37 37 H 1.09007 * 109.58662 * 160.21646 * 19 6 5 38 38 H 1.08995 * 109.03063 * 330.43558 * 20 19 6 39 39 H 1.08999 * 109.03174 * 211.58963 * 20 19 6 40 40 H 1.09004 * 108.86615 * 197.84669 * 21 20 19 41 41 H 1.09003 * 108.78920 * 79.37427 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6041 1.9843 -0.8393 5 6 3.5775 1.4460 -0.1268 6 7 4.0634 2.7049 -0.5158 7 6 5.4988 2.6435 -0.8222 8 1 5.6949 1.7929 -1.4748 9 6 6.2912 2.4832 0.4767 10 6 5.9260 3.9341 -1.5243 11 6 5.1841 4.0652 -2.8295 12 1 4.4782 3.3044 -3.1281 13 6 5.4058 5.1569 -3.6418 14 7 4.7588 5.2711 -4.7810 15 14 6.6263 6.4733 -3.1249 16 1 5.9242 7.5164 -2.3348 17 1 7.6946 5.8597 -2.2958 18 1 7.2303 7.0903 -4.3331 19 6 3.7728 3.7910 0.4412 20 6 2.3492 4.2486 0.2385 21 6 1.3707 3.4765 1.1364 22 8 1.6756 2.0699 1.2047 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8747 0.7053 -0.8691 29 1 4.0142 1.1782 0.8354 30 1 6.0952 3.3339 1.1293 31 1 5.9868 1.5638 0.9768 32 1 7.3563 2.4381 0.2493 33 1 6.9984 3.9048 -1.7173 34 1 5.6947 4.7879 -0.8875 35 1 4.9145 6.0394 -5.3524 36 1 3.8969 3.4234 1.4598 37 1 4.4530 4.6244 0.2657 38 1 2.0715 4.0950 -0.8042 39 1 2.2811 5.3115 0.4701 40 1 0.3609 3.5997 0.7448 41 1 1.4119 3.8953 2.1419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411681219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:49 Heat of formation + Delta-G solvation = -49.988930 kcal Electronic energy + Delta-G solvation = -18894.042129 eV Core-core repulsion = 16194.767620 eV Total energy + Delta-G solvation = -2699.274508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.69286 -36.99946 -34.02284 -32.94669 -31.74224 -30.82732 -27.85221 -26.92044 -25.94146 -23.20112 -22.02004 -21.01609 -20.29453 -18.61037 -16.84960 -16.53035 -15.90694 -15.07260 -14.87469 -14.50647 -14.10213 -13.85223 -13.60304 -12.86627 -12.84511 -12.41451 -12.23335 -11.93417 -11.86542 -11.72694 -11.53860 -11.49250 -11.07942 -10.83109 -10.76847 -10.70319 -10.33742 -10.07422 -9.94918 -9.70852 -9.52929 -9.09809 -8.99867 -8.42261 -7.39129 -5.91315 -3.85050 3.34242 3.42517 3.44799 3.95189 4.49561 4.53848 5.00483 5.15974 5.25186 5.32995 5.37694 5.41472 5.53485 5.57346 5.64720 5.74814 5.78083 5.88965 5.90494 5.95000 6.01679 6.04552 6.10953 6.15597 6.23122 6.28982 6.40112 6.47268 6.49923 6.57689 6.73642 6.80119 7.16440 7.35976 7.63769 7.83694 7.97956 8.14851 8.72693 9.21846 9.71967 11.22641 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.006951 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.529733 B = 4027.233297 C = 4165.291094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.069 0.931 5 C 0.054 3.946 6 N -0.529 5.529 7 C 0.102 3.898 8 H 0.073 0.927 9 C -0.184 4.184 10 C -0.008 4.008 11 C -0.488 4.488 12 H 0.079 0.921 13 C 0.061 3.939 14 N -0.908 5.908 15 Si 0.871 3.129 16 H -0.280 1.280 17 H -0.268 1.268 18 H -0.290 1.290 19 C 0.072 3.928 20 C -0.155 4.155 21 C 0.067 3.933 22 O -0.388 6.388 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.019 0.981 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.018 0.982 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.030 0.970 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.051 -6.580 11.924 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.037 3.963 4 H 0.087 0.913 5 C -0.077 4.077 6 N -0.251 5.251 7 C -0.006 4.006 8 H 0.092 0.908 9 C -0.243 4.243 10 C -0.046 4.046 11 C -0.526 4.526 12 H 0.097 0.903 13 C -0.138 4.138 14 N -0.549 5.549 15 Si 0.699 3.301 16 H -0.206 1.206 17 H -0.193 1.193 18 H -0.216 1.216 19 C -0.055 4.055 20 C -0.193 4.193 21 C -0.009 4.009 22 O -0.307 6.307 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.319 -6.454 11.530 14.243 hybrid contribution 1.066 0.862 0.614 1.502 sum -4.253 -5.593 12.143 14.030 Atomic orbital electron populations 1.21702 0.95639 1.01137 1.02046 1.21596 0.96268 0.95417 1.02347 1.22048 0.93682 0.92999 0.87596 0.91262 1.21537 0.95197 0.92301 0.98632 1.59087 1.16139 1.04301 1.45589 1.21632 0.84310 1.00992 0.93655 0.90837 1.22538 1.01128 1.00620 1.00051 1.19736 0.96197 0.92010 0.96607 1.21036 1.23021 1.07621 1.00912 0.90294 1.25005 0.95891 0.97888 0.95013 1.69912 1.42922 1.30158 1.11874 0.86925 0.82490 0.82654 0.78013 1.20627 1.19322 1.21644 1.21641 0.96139 0.95042 0.92707 1.22025 0.95608 0.99636 1.02030 1.22904 0.96987 0.80901 1.00089 1.87399 1.88474 1.22057 1.32781 0.93064 0.92334 0.92910 0.90743 0.91616 0.90919 0.96292 0.93051 0.93746 0.92602 0.96430 0.96957 0.93110 0.95164 0.89941 0.89595 0.91040 0.93708 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.81 37.16 0.36 -1.30 16 2 C -0.12 -1.48 5.61 -26.72 -0.15 -1.63 16 3 C 0.10 1.44 2.23 -26.06 -0.06 1.38 16 4 H 0.07 1.15 7.11 -51.93 -0.37 0.78 16 5 C 0.05 0.88 4.24 -6.51 -0.03 0.86 16 6 N -0.53 -9.98 3.64 -231.56 -0.84 -10.82 16 7 C 0.10 2.00 2.24 -67.71 -0.15 1.85 16 8 H 0.07 1.49 7.81 -51.93 -0.41 1.08 16 9 C -0.18 -3.05 8.66 37.15 0.32 -2.73 16 10 C -0.01 -0.19 3.41 -27.88 -0.09 -0.29 16 11 C -0.49 -13.63 9.33 -34.44 -0.32 -13.96 16 12 H 0.08 2.42 7.97 -52.49 -0.42 2.00 16 13 C 0.06 1.78 5.47 -17.82 -0.10 1.69 16 14 N -0.91 -28.11 13.96 55.43 0.77 -27.33 16 15 Si 0.87 21.75 27.47 -169.99 -4.67 17.09 16 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 17 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 C 0.07 1.26 3.78 -4.47 -0.02 1.24 16 20 C -0.15 -2.48 5.41 -27.47 -0.15 -2.63 16 21 C 0.07 0.93 6.72 37.48 0.25 1.19 16 22 O -0.39 -5.94 9.30 -34.28 -0.32 -6.26 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.68 7.84 -51.93 -0.41 0.28 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 1.18 7.61 -51.93 -0.40 0.78 16 29 H 0.02 0.32 6.84 -51.93 -0.36 -0.04 16 30 H 0.05 0.83 6.88 -51.93 -0.36 0.48 16 31 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 34 H 0.01 0.29 5.49 -51.93 -0.29 0.00 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.03 0.51 7.37 -51.93 -0.38 0.12 16 37 H 0.08 1.56 5.56 -51.93 -0.29 1.27 16 38 H 0.09 1.59 7.39 -51.93 -0.38 1.21 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -30.16 307.33 -7.88 -38.04 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.32 Total: -1.02 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.13 Total: -14.32 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: -0.07 Total: -38.16 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.32 Total: -6.26 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.16 -7.88 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411681219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.953 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds