Wall clock time and date at job start Sun Mar 29 2020 22:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53009 * 109.47015 * 2 1 4 4 H 1.08994 * 109.58806 * 305.17906 * 3 2 1 5 5 C 1.54271 * 109.52823 * 185.00143 * 3 2 1 6 6 N 1.40442 * 111.68822 * 162.87892 * 5 3 2 7 7 C 1.46901 * 111.00005 * 188.29724 * 6 5 3 8 8 H 1.08995 * 109.46814 * 47.82407 * 7 6 5 9 9 C 1.52994 * 109.47371 * 287.82065 * 7 6 5 10 10 C 1.53005 * 109.46746 * 167.81917 * 7 6 5 11 11 C 1.50700 * 109.47385 * 297.83720 * 10 7 6 12 12 H 1.07998 * 119.99666 * 0.02562 * 11 10 7 13 13 C 1.37869 * 119.99938 * 179.97438 * 11 10 7 14 14 N 1.31515 * 119.99802 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00296 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.46953 * 269.99591 * 15 13 11 17 17 H 1.48501 * 109.47173 * 29.99248 * 15 13 11 18 18 H 1.48500 * 109.47501 * 149.99722 * 15 13 11 19 19 C 1.47638 * 114.31377 * 61.81131 * 6 5 3 20 20 C 1.50901 * 108.76921 * 279.99838 * 19 6 5 21 21 C 1.53613 * 111.71382 * 91.01103 * 20 19 6 22 22 O 1.40627 * 109.52593 * 65.35549 * 3 2 1 23 23 H 1.08997 * 109.47031 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46669 * 299.99618 * 1 2 3 25 25 H 1.08997 * 109.47398 * 59.99825 * 1 2 3 26 26 H 1.08999 * 109.46987 * 240.00795 * 2 1 3 27 27 H 1.08997 * 109.47398 * 120.00175 * 2 1 3 28 28 H 1.08998 * 109.03930 * 42.31294 * 5 3 2 29 29 H 1.09001 * 109.03828 * 283.44550 * 5 3 2 30 30 H 1.08995 * 109.47430 * 299.99964 * 9 7 6 31 31 H 1.09001 * 109.46800 * 60.00088 * 9 7 6 32 32 H 1.08997 * 109.47123 * 180.02562 * 9 7 6 33 33 H 1.09003 * 109.46931 * 177.83896 * 10 7 6 34 34 H 1.08996 * 109.47134 * 57.84522 * 10 7 6 35 35 H 0.97007 * 120.00094 * 179.97438 * 14 13 11 36 36 H 1.08997 * 109.59030 * 39.78440 * 19 6 5 37 37 H 1.09007 * 109.58662 * 160.21646 * 19 6 5 38 38 H 1.08995 * 109.03063 * 330.43558 * 20 19 6 39 39 H 1.08999 * 109.03174 * 211.58963 * 20 19 6 40 40 H 1.09004 * 108.86615 * 197.84669 * 21 20 19 41 41 H 1.09003 * 108.78920 * 79.37427 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6041 1.9843 -0.8393 5 6 3.5775 1.4460 -0.1268 6 7 4.0634 2.7049 -0.5158 7 6 5.4988 2.6435 -0.8222 8 1 5.6949 1.7929 -1.4748 9 6 6.2912 2.4832 0.4767 10 6 5.9260 3.9341 -1.5243 11 6 5.1841 4.0652 -2.8295 12 1 4.4782 3.3044 -3.1281 13 6 5.4058 5.1569 -3.6418 14 7 4.7588 5.2711 -4.7810 15 14 6.6263 6.4733 -3.1249 16 1 5.9242 7.5164 -2.3348 17 1 7.6946 5.8597 -2.2958 18 1 7.2303 7.0903 -4.3331 19 6 3.7728 3.7910 0.4412 20 6 2.3492 4.2486 0.2385 21 6 1.3707 3.4765 1.1364 22 8 1.6756 2.0699 1.2047 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8747 0.7053 -0.8691 29 1 4.0142 1.1782 0.8354 30 1 6.0952 3.3339 1.1293 31 1 5.9868 1.5638 0.9768 32 1 7.3563 2.4381 0.2493 33 1 6.9984 3.9048 -1.7173 34 1 5.6947 4.7879 -0.8875 35 1 4.9145 6.0394 -5.3524 36 1 3.8969 3.4234 1.4598 37 1 4.4530 4.6244 0.2657 38 1 2.0715 4.0950 -0.8042 39 1 2.2811 5.3115 0.4701 40 1 0.3609 3.5997 0.7448 41 1 1.4119 3.8953 2.1419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411681219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:49 Heat of formation + Delta-G solvation = -69.114701 kcal Electronic energy + Delta-G solvation = -18894.871484 eV Core-core repulsion = 16194.767620 eV Total energy + Delta-G solvation = -2700.103864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01504 -38.37494 -35.14342 -34.94520 -33.30913 -32.21550 -29.64431 -28.16965 -27.19024 -24.93078 -23.29287 -22.50808 -21.53753 -20.11661 -18.76058 -18.03902 -17.26439 -16.60702 -16.07826 -16.06319 -15.73800 -15.08420 -14.72425 -14.60132 -14.28749 -13.94353 -13.62273 -13.59086 -13.31040 -13.01045 -12.87200 -12.77329 -12.59753 -12.28305 -12.00892 -11.94479 -11.77123 -11.66077 -11.55998 -11.39220 -11.20441 -11.02441 -10.64962 -10.30004 -8.81278 -8.16047 -6.14464 1.36731 1.38858 1.49346 2.42425 2.79252 3.09329 3.23363 3.80899 3.94065 4.10435 4.15851 4.20774 4.26797 4.36740 4.41862 4.42817 4.55597 4.57856 4.62697 4.75264 4.78913 4.87601 4.91629 4.98839 5.05245 5.11096 5.12705 5.14064 5.20653 5.26501 5.30196 5.39536 5.45934 5.57617 5.76350 6.36869 6.44573 6.55802 6.76058 6.93931 7.45941 9.01259 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.006951 C = 0.006721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.529733 B = 4027.233297 C = 4165.291094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C 0.100 3.900 4 H 0.046 0.954 5 C 0.055 3.945 6 N -0.552 5.552 7 C 0.102 3.898 8 H 0.061 0.939 9 C -0.172 4.172 10 C -0.004 4.004 11 C -0.484 4.484 12 H 0.035 0.965 13 C -0.002 4.002 14 N -0.958 5.958 15 Si 0.940 3.060 16 H -0.271 1.271 17 H -0.248 1.248 18 H -0.290 1.290 19 C 0.075 3.925 20 C -0.152 4.152 21 C 0.069 3.931 22 O -0.392 6.392 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.487 -6.637 14.323 16.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.064 0.936 5 C -0.075 4.075 6 N -0.275 5.275 7 C -0.005 4.005 8 H 0.079 0.921 9 C -0.231 4.231 10 C -0.042 4.042 11 C -0.523 4.523 12 H 0.054 0.946 13 C -0.197 4.197 14 N -0.601 5.601 15 Si 0.765 3.235 16 H -0.197 1.197 17 H -0.172 1.172 18 H -0.217 1.217 19 C -0.052 4.052 20 C -0.190 4.190 21 C -0.006 4.006 22 O -0.312 6.312 23 H 0.089 0.911 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.754 -6.528 13.954 16.122 hybrid contribution 0.824 0.829 -0.180 1.183 sum -3.929 -5.699 13.774 15.415 Atomic orbital electron populations 1.21670 0.94623 1.02267 1.01566 1.21597 0.97128 0.93553 1.03007 1.22007 0.92622 0.94364 0.86859 0.93603 1.21565 0.96171 0.91081 0.98656 1.59034 1.15817 1.05760 1.46884 1.21473 0.85639 0.98404 0.95020 0.92114 1.22381 1.01065 1.01591 0.98059 1.19674 0.95539 0.94359 0.94614 1.21241 1.22033 1.06214 1.02800 0.94639 1.25905 0.98143 1.00651 0.94957 1.70084 1.45227 1.31266 1.13511 0.85806 0.80297 0.79524 0.77850 1.19674 1.17158 1.21666 1.21617 0.96479 0.94099 0.93005 1.21987 0.95444 1.01030 1.00526 1.22990 0.96658 0.80055 1.00947 1.87390 1.88445 1.22714 1.32622 0.91139 0.92650 0.93533 0.90242 0.90751 0.91241 0.95613 0.92548 0.92211 0.91596 0.96150 0.96338 0.93147 0.93783 0.91535 0.93070 0.89577 0.92682 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.81 71.98 0.71 -2.32 16 2 C -0.11 -2.71 5.61 30.60 0.17 -2.54 16 3 C 0.10 2.97 2.23 31.03 0.07 3.04 16 4 H 0.05 1.57 7.11 -2.39 -0.02 1.55 16 5 C 0.06 1.78 4.24 87.90 0.37 2.15 16 6 N -0.55 -20.79 3.64 -886.53 -3.23 -24.02 16 7 C 0.10 3.97 2.24 44.91 0.10 4.08 16 8 H 0.06 2.48 7.81 -2.39 -0.02 2.46 16 9 C -0.17 -5.27 8.66 71.98 0.62 -4.64 16 10 C 0.00 -0.20 3.41 29.85 0.10 -0.10 16 11 C -0.48 -27.77 9.33 25.60 0.24 -27.54 16 12 H 0.04 2.29 7.97 -2.91 -0.02 2.26 16 13 C 0.00 -0.11 5.47 84.65 0.46 0.35 16 14 N -0.96 -61.12 13.96 21.44 0.30 -60.82 16 15 Si 0.94 44.79 27.47 68.60 1.88 46.67 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 18 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 19 C 0.07 2.55 3.78 85.48 0.32 2.87 16 20 C -0.15 -4.77 5.41 30.12 0.16 -4.61 16 21 C 0.07 1.80 6.72 72.19 0.48 2.28 16 22 O -0.39 -11.32 9.30 -145.56 -1.35 -12.67 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.05 1.20 7.84 -2.39 -0.02 1.18 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.07 2.25 7.61 -2.39 -0.02 2.23 16 29 H 0.03 0.81 6.84 -2.39 -0.02 0.79 16 30 H 0.06 1.67 6.88 -2.39 -0.02 1.65 16 31 H 0.06 1.65 6.90 -2.39 -0.02 1.63 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 34 H 0.02 0.84 5.49 -2.39 -0.01 0.83 16 35 H 0.26 15.60 8.31 -92.70 -0.77 14.83 16 36 H 0.04 1.37 7.37 -2.39 -0.02 1.36 16 37 H 0.07 2.45 5.56 -2.38 -0.01 2.44 16 38 H 0.05 1.96 7.39 -2.39 -0.02 1.94 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -65.84 307.33 2.34 -63.51 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.92 Total: 14.31 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 3.82 Total: -26.97 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.93 Total: -84.84 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -1.35 Total: -12.67 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.67 kcal Total: -65.84 2.34 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411681219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.609 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds