Wall clock time and date at job start Sun Mar 29 2020 22:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47711 * 2 1 4 4 C 1.53003 * 109.47080 * 120.00263 * 2 1 3 5 5 H 1.09005 * 109.46918 * 301.85516 * 4 2 1 6 6 N 1.46899 * 109.47382 * 181.84924 * 4 2 1 7 7 C 1.46902 * 110.99827 * 102.42177 * 6 4 2 8 8 C 1.50692 * 109.47104 * 174.59834 * 7 6 4 9 9 H 1.08003 * 120.00251 * 359.97438 * 8 7 6 10 10 C 1.37883 * 120.00287 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99807 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00314 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46929 * 89.99821 * 12 10 8 14 14 H 1.48500 * 109.46911 * 209.99481 * 12 10 8 15 15 H 1.48495 * 109.47107 * 329.99784 * 12 10 8 16 16 C 1.53002 * 109.47245 * 61.84542 * 4 2 1 17 17 C 1.52999 * 112.84601 * 48.80925 * 16 4 2 18 18 O 1.42903 * 109.47159 * 179.97438 * 17 16 4 19 19 C 1.53776 * 113.61915 * 277.50280 * 16 4 2 20 20 C 1.53775 * 87.08273 * 220.01979 * 19 16 4 21 21 C 1.53780 * 87.08251 * 25.43062 * 20 19 16 22 22 H 1.09000 * 109.46991 * 300.00555 * 1 2 3 23 23 H 1.08999 * 109.46481 * 59.99655 * 1 2 3 24 24 H 1.08991 * 109.47466 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46991 * 239.99445 * 2 1 3 26 26 H 1.09001 * 109.47406 * 179.43393 * 3 2 1 27 27 H 1.09001 * 109.46923 * 299.43403 * 3 2 1 28 28 H 1.08998 * 109.46825 * 59.43144 * 3 2 1 29 29 H 1.00898 * 111.00026 * 338.46828 * 6 4 2 30 30 H 1.09004 * 109.47250 * 294.59351 * 7 6 4 31 31 H 1.08994 * 109.47618 * 54.59312 * 7 6 4 32 32 H 0.96993 * 120.00056 * 180.02562 * 11 10 8 33 33 H 1.09000 * 109.47235 * 299.99832 * 17 16 4 34 34 H 1.09000 * 109.46985 * 59.99871 * 17 16 4 35 35 H 0.96701 * 113.99850 * 179.97438 * 18 17 16 36 36 H 1.09006 * 113.61360 * 334.56996 * 19 16 4 37 37 H 1.09001 * 113.61460 * 105.46839 * 19 16 4 38 38 H 1.09010 * 113.61225 * 270.88516 * 20 19 16 39 39 H 1.09001 * 113.61787 * 139.98286 * 20 19 16 40 40 H 1.09002 * 113.61464 * 220.02139 * 21 20 19 41 41 H 1.09000 * 113.69095 * 89.13191 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6497 -0.2270 2.1389 6 7 3.5083 -0.6828 1.2719 7 6 3.9938 0.3329 2.2157 8 6 5.4956 0.2533 2.3107 9 1 6.0355 -0.4789 1.7285 10 6 6.1805 1.1144 3.1417 11 7 5.5230 2.0056 3.8510 12 14 8.0421 1.0153 3.2600 13 1 8.6510 1.9091 2.2424 14 1 8.4753 1.4407 4.6152 15 1 8.4798 -0.3826 3.0164 16 6 1.5683 -2.1766 1.2262 17 6 1.8376 -2.8673 -0.1122 18 8 1.3714 -4.2168 -0.0542 19 6 0.1321 -2.3670 1.7417 20 6 0.6355 -3.6412 2.4401 21 6 2.0301 -2.9932 2.4447 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 0.0102 27 1 1.6852 1.9533 -0.8950 28 1 1.6685 1.9592 0.8848 29 1 3.8802 -0.5244 0.3474 30 1 3.7040 1.3233 1.8646 31 1 3.5575 0.1538 3.1984 32 1 6.0048 2.6117 4.4353 33 1 1.3146 -2.3356 -0.9072 34 1 2.9086 -2.8616 -0.3149 35 1 1.5095 -4.7161 -0.8708 36 1 -0.1905 -1.5885 2.4331 37 1 -0.5935 -2.5598 0.9515 38 1 0.5710 -4.5343 1.8184 39 1 0.2184 -3.7868 3.4366 40 1 2.8368 -3.6917 2.2219 41 1 2.2279 -2.3859 3.3279 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411774166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:16 Heat of formation + Delta-G solvation = -63.587098 kcal Electronic energy + Delta-G solvation = -18809.587369 eV Core-core repulsion = 16109.723200 eV Total energy + Delta-G solvation = -2699.864169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.25804 -37.87116 -36.40149 -35.30924 -33.57572 -30.18546 -28.56430 -27.68561 -26.17705 -25.80691 -23.98982 -22.86248 -20.70333 -19.37584 -18.54359 -18.15086 -16.80875 -16.46679 -16.33018 -15.86134 -15.60890 -15.37013 -14.50013 -14.29580 -13.77536 -13.74995 -13.39879 -13.26509 -13.10005 -12.94474 -12.87721 -12.74885 -12.62420 -12.33835 -12.28984 -12.00636 -11.76762 -11.55585 -11.35087 -11.04846 -10.98002 -10.69533 -10.60197 -10.46785 -8.89133 -8.19771 -6.29877 1.39191 1.40879 1.52362 2.40053 3.12903 3.42632 3.48249 3.68942 3.91026 4.06619 4.11156 4.13139 4.21026 4.31971 4.51711 4.69308 4.73634 4.76356 4.82201 4.90511 4.94359 4.97071 5.04698 5.08876 5.11826 5.16156 5.19862 5.25908 5.37088 5.38724 5.44112 5.50490 5.61377 5.67433 5.79785 6.09614 6.56090 6.81221 6.96562 7.07051 7.40703 8.90843 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.006720 C = 0.006035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.816264 B = 4165.651787 C = 4638.236403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.110 3.890 5 H 0.040 0.960 6 N -0.677 5.677 7 C 0.214 3.786 8 C -0.529 4.529 9 H 0.060 0.940 10 C 0.001 3.999 11 N -0.935 5.935 12 Si 0.968 3.032 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.267 1.267 16 C -0.061 4.061 17 C 0.109 3.891 18 O -0.576 6.576 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.115 4.115 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.037 0.963 27 H 0.072 0.928 28 H 0.034 0.966 29 H 0.332 0.668 30 H -0.024 1.024 31 H -0.014 1.014 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.041 0.959 35 H 0.389 0.611 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.033 -8.361 -10.229 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.132 4.132 3 C -0.204 4.204 4 C -0.001 4.001 5 H 0.058 0.942 6 N -0.306 5.306 7 C 0.086 3.914 8 C -0.567 4.567 9 H 0.079 0.921 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.792 3.208 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.191 1.191 16 C -0.062 4.062 17 C 0.032 3.968 18 O -0.384 6.384 19 C -0.152 4.152 20 C -0.167 4.167 21 C -0.153 4.153 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.102 0.898 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.149 0.851 30 H -0.006 1.006 31 H 0.004 0.996 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.096 -8.556 -9.037 16.674 hybrid contribution 1.193 1.200 -0.286 1.716 sum -9.904 -7.357 -9.323 15.464 Atomic orbital electron populations 1.21936 0.93437 1.03018 1.01698 1.21749 0.97666 0.95378 0.98360 1.21889 1.00309 0.96920 1.01282 1.21546 0.88121 0.93803 0.96628 0.94155 1.60520 1.06534 1.51767 1.11826 1.19242 0.94042 0.88041 0.90085 1.21575 0.93108 1.16953 1.25095 0.92138 1.25898 1.03738 0.94897 0.95161 1.70090 1.37588 1.21397 1.28459 0.85411 0.79299 0.78655 0.77407 1.19622 1.20914 1.19135 1.21756 0.96453 0.93290 0.94672 1.21724 0.97547 0.82433 0.95111 1.86464 1.85061 1.24453 1.42424 1.22908 0.95186 0.97418 0.99730 1.22906 0.95291 0.98488 1.00037 1.22551 0.97266 0.98216 0.97252 0.93692 0.91601 0.90652 0.89792 0.94370 0.90933 0.94723 0.85081 1.00647 0.99597 0.92823 0.91812 0.94048 0.76119 0.91389 0.89936 0.88101 0.92574 0.93293 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.31 71.98 0.60 -2.65 16 2 C -0.11 -3.13 1.80 -10.79 -0.02 -3.15 16 3 C -0.15 -4.67 8.02 71.98 0.58 -4.09 16 4 C 0.11 3.80 1.43 44.92 0.06 3.87 16 5 H 0.04 1.63 7.32 -2.38 -0.02 1.62 16 6 N -0.68 -28.64 5.73 -495.58 -2.84 -31.48 16 7 C 0.21 11.45 4.79 85.55 0.41 11.86 16 8 C -0.53 -30.53 9.36 25.60 0.24 -30.29 16 9 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 10 C 0.00 0.05 5.46 84.66 0.46 0.51 16 11 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 12 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 C -0.06 -1.81 0.43 -51.66 -0.02 -1.83 16 17 C 0.11 2.68 5.80 71.98 0.42 3.09 16 18 O -0.58 -12.39 10.54 -148.98 -1.57 -13.96 16 19 C -0.11 -3.00 5.09 31.12 0.16 -2.84 16 20 C -0.13 -3.60 7.53 31.12 0.23 -3.36 16 21 C -0.12 -3.95 6.82 31.12 0.21 -3.74 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.07 1.55 4.69 -2.39 -0.01 1.54 16 25 H 0.08 2.10 6.48 -2.39 -0.02 2.08 16 26 H 0.04 1.41 5.89 -2.39 -0.01 1.40 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.33 13.29 7.62 -89.70 -0.68 12.61 16 30 H -0.02 -1.36 6.12 -2.38 -0.01 -1.37 16 31 H -0.01 -0.85 7.96 -2.39 -0.02 -0.87 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.06 1.31 6.23 -2.39 -0.01 1.29 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.39 4.73 9.12 -74.06 -0.68 4.05 16 36 H 0.07 1.85 7.96 -2.38 -0.02 1.83 16 37 H 0.08 1.85 6.94 -2.39 -0.02 1.83 16 38 H 0.10 2.68 6.15 -2.38 -0.01 2.67 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 41 H 0.04 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -65.94 308.90 0.89 -65.04 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.34 Total: 22.90 kcal Atomic # 6 Polarization: -35.96 SS G_CDS: 3.33 Total: -32.63 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -2.55 Total: -88.53 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.57 Total: -13.96 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -65.94 0.89 -65.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411774166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.457 kcal (2) G-P(sol) polarization free energy of solvation -65.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds