Wall clock time and date at job start Sun Mar 29 2020 23:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 H 1.09001 * 109.46762 * 304.35669 * 3 2 1 5 5 C 1.52999 * 109.47223 * 184.36027 * 3 2 1 6 6 N 1.46896 * 109.47205 * 173.46974 * 5 3 2 7 7 C 1.46904 * 111.00177 * 286.95853 * 6 5 3 8 8 C 1.50699 * 109.47113 * 169.99841 * 7 6 5 9 9 H 1.08001 * 119.99745 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99921 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00154 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00000 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47357 * 89.99579 * 12 10 8 14 14 H 1.48500 * 109.47119 * 209.99654 * 12 10 8 15 15 H 1.48499 * 109.46906 * 329.99453 * 12 10 8 16 16 C 1.46909 * 110.99837 * 163.00878 * 6 5 3 17 17 C 1.52998 * 109.46765 * 288.01644 * 16 6 5 18 18 C 1.53000 * 117.49936 * 245.11166 * 17 16 6 19 19 C 1.53001 * 117.49352 * 176.45485 * 17 16 6 20 20 O 1.42898 * 109.47331 * 64.35950 * 3 2 1 21 21 C 1.42901 * 113.99648 * 216.80877 * 20 3 2 22 22 H 1.09004 * 109.47148 * 184.72085 * 1 2 3 23 23 H 1.08993 * 109.47241 * 304.71804 * 1 2 3 24 24 H 1.09004 * 109.46979 * 64.72439 * 1 2 3 25 25 H 1.09000 * 109.47179 * 239.99454 * 2 1 3 26 26 H 1.09002 * 109.46744 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47117 * 53.46882 * 5 3 2 28 28 H 1.09003 * 109.47058 * 293.47438 * 5 3 2 29 29 H 1.08991 * 109.47185 * 290.00445 * 7 6 5 30 30 H 1.09001 * 109.46557 * 50.00000 * 7 6 5 31 31 H 0.97004 * 120.00452 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.46775 * 168.01628 * 16 6 5 33 33 H 1.08997 * 109.47121 * 48.01772 * 16 6 5 34 34 H 1.08997 * 115.55069 * 30.78563 * 17 16 6 35 35 H 1.09004 * 117.49526 * 0.02562 * 18 17 16 36 36 H 1.08999 * 117.49840 * 145.02218 * 18 17 16 37 37 H 1.09002 * 117.49706 * 214.98041 * 19 17 16 38 38 H 1.08995 * 117.50426 * 359.97438 * 19 17 16 39 39 H 1.09000 * 109.46798 * 183.82380 * 21 20 3 40 40 H 1.08997 * 109.47337 * 303.81560 * 21 20 3 41 41 H 1.09001 * 109.47395 * 63.82459 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6143 1.9783 -0.8484 5 6 3.5661 1.4438 -0.1097 6 7 4.0445 2.8238 -0.2669 7 6 3.7452 3.3348 -1.6114 8 6 4.0230 4.8151 -1.6594 9 1 4.3860 5.3253 -0.7794 10 6 3.8138 5.5182 -2.8269 11 7 4.0567 6.8100 -2.8690 12 14 3.1853 4.6359 -4.3487 13 1 1.7006 4.6627 -4.3587 14 1 3.7008 5.3165 -5.5638 15 1 3.6549 3.2272 -4.3335 16 6 5.4811 2.9194 0.0248 17 6 5.7072 2.7637 1.5300 18 6 6.2642 3.9696 2.2892 19 6 7.1534 2.7510 2.0294 20 8 1.6492 2.0859 1.2146 21 6 1.2961 3.4615 1.0559 22 1 -0.3634 -1.0242 0.0846 23 1 -0.3633 0.5852 0.8446 24 1 -0.3633 0.4388 -0.9293 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8687 0.8536 -0.9746 28 1 3.9957 1.0110 0.7938 29 1 4.3718 2.8235 -2.3421 30 1 2.6956 3.1543 -1.8432 31 1 3.9091 7.3048 -3.6902 32 1 5.8539 3.8908 -0.3001 33 1 6.0130 2.1300 -0.5061 34 1 4.9896 2.1292 2.0500 35 1 6.4691 4.8741 1.7163 36 1 5.9132 4.1283 3.3088 37 1 7.3870 2.1085 2.8783 38 1 7.9436 2.8532 1.2857 39 1 1.0772 3.8952 2.0317 40 1 2.1259 3.9991 0.5973 41 1 0.4157 3.5394 0.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412976641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:07 Heat of formation + Delta-G solvation = -25.626752 kcal Electronic energy + Delta-G solvation = -18533.836180 eV Core-core repulsion = 15835.618095 eV Total energy + Delta-G solvation = -2698.218085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.60594 -37.16126 -35.20925 -33.26876 -32.39832 -28.91513 -27.93467 -25.98720 -24.64543 -22.79871 -21.98174 -21.04430 -20.29467 -19.41739 -16.97644 -16.26989 -15.65247 -14.93339 -14.80381 -14.51046 -13.99499 -13.66286 -13.50656 -13.17667 -12.83853 -12.58512 -12.29615 -12.14305 -11.84449 -11.80928 -11.15230 -11.01577 -10.91555 -10.83682 -10.72044 -10.59144 -10.45645 -10.05794 -9.87662 -9.80249 -9.42286 -9.33896 -8.90383 -8.59975 -7.30026 -6.08906 -4.06181 3.24034 3.32351 3.33929 4.18965 4.32632 4.38003 4.66206 5.11337 5.22059 5.25956 5.32702 5.37713 5.39315 5.54336 5.67782 5.81827 5.92434 5.93848 5.99255 6.01513 6.02825 6.05912 6.16767 6.22039 6.27448 6.32350 6.32765 6.38413 6.51685 6.52310 6.74724 6.75753 6.92215 6.95129 7.56966 7.78477 7.93758 8.05266 8.62947 9.00594 9.53176 11.03918 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.010327 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.601798 B = 2710.676768 C = 4089.281266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.094 3.906 4 H 0.063 0.937 5 C 0.032 3.968 6 N -0.520 5.520 7 C 0.159 3.841 8 C -0.508 4.508 9 H 0.082 0.918 10 C 0.070 3.930 11 N -0.898 5.898 12 Si 0.870 3.130 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.092 3.908 17 C -0.135 4.135 18 C -0.173 4.173 19 C -0.192 4.192 20 O -0.381 6.381 21 C 0.030 3.970 22 H 0.049 0.951 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.072 0.928 29 H -0.013 1.013 30 H 0.023 0.977 31 H 0.263 0.737 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.637 -11.225 6.506 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C 0.036 3.964 4 H 0.081 0.919 5 C -0.097 4.097 6 N -0.244 5.244 7 C 0.033 3.967 8 C -0.546 4.546 9 H 0.100 0.900 10 C -0.132 4.132 11 N -0.537 5.537 12 Si 0.697 3.303 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.193 1.193 16 C -0.036 4.036 17 C -0.153 4.153 18 C -0.210 4.210 19 C -0.230 4.230 20 O -0.300 6.300 21 C -0.067 4.067 22 H 0.068 0.932 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.005 0.995 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.895 -10.854 6.882 12.991 hybrid contribution 0.061 -0.651 -1.759 1.876 sum -1.835 -11.505 5.124 12.728 Atomic orbital electron populations 1.21702 0.95646 1.01124 1.02096 1.21631 0.96376 0.95927 1.02125 1.22109 0.93545 0.92626 0.88129 0.91931 1.22662 0.95650 0.91282 1.00110 1.61837 1.14833 1.17377 1.30311 1.20233 0.95357 0.96742 0.84413 1.21021 1.44206 0.90695 0.98703 0.89967 1.24888 0.95233 0.94681 0.98389 1.69887 1.49190 1.06926 1.27715 0.86939 0.79579 0.80345 0.83391 1.20173 1.21174 1.19294 1.21586 0.88653 1.01747 0.91589 1.22322 0.94953 1.01464 0.96585 1.22941 1.03833 0.93139 1.01091 1.22942 0.94390 1.02486 1.03146 1.87725 1.87063 1.24215 1.30954 1.22870 1.00130 0.82693 1.00994 0.93156 0.91966 0.93140 0.91311 0.91438 0.95262 0.90946 0.99538 0.95954 0.92667 0.89003 0.96036 0.88003 0.88597 0.89567 0.89589 0.89245 0.91261 0.89967 0.95674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.86 37.16 0.37 -1.45 16 2 C -0.12 -1.63 5.64 -26.73 -0.15 -1.78 16 3 C 0.09 1.56 2.29 -26.73 -0.06 1.50 16 4 H 0.06 1.13 6.07 -51.93 -0.32 0.82 16 5 C 0.03 0.55 4.44 -3.83 -0.02 0.54 16 6 N -0.52 -10.55 2.99 -236.07 -0.71 -11.26 16 7 C 0.16 3.73 3.43 -4.97 -0.02 3.71 16 8 C -0.51 -13.91 8.84 -34.44 -0.30 -14.22 16 9 H 0.08 2.46 7.50 -52.49 -0.39 2.07 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 12 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.31 6.54 56.52 0.37 -5.95 16 16 C 0.09 1.76 5.09 -3.82 -0.02 1.74 16 17 C -0.13 -2.21 5.60 -90.62 -0.51 -2.71 16 18 C -0.17 -2.68 10.18 -26.69 -0.27 -2.95 16 19 C -0.19 -2.68 10.25 -26.69 -0.27 -2.96 16 20 O -0.38 -6.68 9.75 -35.23 -0.34 -7.02 16 21 C 0.03 0.52 10.68 101.05 1.08 1.60 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 28 H 0.07 1.19 6.45 -51.93 -0.34 0.85 16 29 H -0.01 -0.32 7.18 -51.93 -0.37 -0.69 16 30 H 0.02 0.53 5.80 -51.93 -0.30 0.23 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 2.00 6.32 -51.93 -0.33 1.67 16 33 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 34 H 0.10 1.68 6.83 -51.93 -0.35 1.33 16 35 H 0.10 1.59 8.04 -51.93 -0.42 1.17 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.08 1.69 6.60 -51.93 -0.34 1.35 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -28.78 322.86 -7.72 -36.51 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -7.37 Total: 1.71 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -0.27 Total: -15.10 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.07 Total: -37.44 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.34 Total: -7.02 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.78 -7.72 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412976641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.880 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds