Wall clock time and date at job start Sun Mar 29 2020 23:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47208 * 2 1 4 4 H 1.09001 * 109.46762 * 304.35669 * 3 2 1 5 5 C 1.52999 * 109.47223 * 184.36027 * 3 2 1 6 6 N 1.46896 * 109.47205 * 173.46974 * 5 3 2 7 7 C 1.46904 * 111.00177 * 286.95853 * 6 5 3 8 8 C 1.50699 * 109.47113 * 169.99841 * 7 6 5 9 9 H 1.08001 * 119.99745 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99921 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00154 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00000 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47357 * 89.99579 * 12 10 8 14 14 H 1.48500 * 109.47119 * 209.99654 * 12 10 8 15 15 H 1.48499 * 109.46906 * 329.99453 * 12 10 8 16 16 C 1.46909 * 110.99837 * 163.00878 * 6 5 3 17 17 C 1.52998 * 109.46765 * 288.01644 * 16 6 5 18 18 C 1.53000 * 117.49936 * 245.11166 * 17 16 6 19 19 C 1.53001 * 117.49352 * 176.45485 * 17 16 6 20 20 O 1.42898 * 109.47331 * 64.35950 * 3 2 1 21 21 C 1.42901 * 113.99648 * 216.80877 * 20 3 2 22 22 H 1.09004 * 109.47148 * 184.72085 * 1 2 3 23 23 H 1.08993 * 109.47241 * 304.71804 * 1 2 3 24 24 H 1.09004 * 109.46979 * 64.72439 * 1 2 3 25 25 H 1.09000 * 109.47179 * 239.99454 * 2 1 3 26 26 H 1.09002 * 109.46744 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47117 * 53.46882 * 5 3 2 28 28 H 1.09003 * 109.47058 * 293.47438 * 5 3 2 29 29 H 1.08991 * 109.47185 * 290.00445 * 7 6 5 30 30 H 1.09001 * 109.46557 * 50.00000 * 7 6 5 31 31 H 0.97004 * 120.00452 * 180.02562 * 11 10 8 32 32 H 1.08999 * 109.46775 * 168.01628 * 16 6 5 33 33 H 1.08997 * 109.47121 * 48.01772 * 16 6 5 34 34 H 1.08997 * 115.55069 * 30.78563 * 17 16 6 35 35 H 1.09004 * 117.49526 * 0.02562 * 18 17 16 36 36 H 1.08999 * 117.49840 * 145.02218 * 18 17 16 37 37 H 1.09002 * 117.49706 * 214.98041 * 19 17 16 38 38 H 1.08995 * 117.50426 * 359.97438 * 19 17 16 39 39 H 1.09000 * 109.46798 * 183.82380 * 21 20 3 40 40 H 1.08997 * 109.47337 * 303.81560 * 21 20 3 41 41 H 1.09001 * 109.47395 * 63.82459 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6143 1.9783 -0.8484 5 6 3.5661 1.4438 -0.1097 6 7 4.0445 2.8238 -0.2669 7 6 3.7452 3.3348 -1.6114 8 6 4.0230 4.8151 -1.6594 9 1 4.3860 5.3253 -0.7794 10 6 3.8138 5.5182 -2.8269 11 7 4.0567 6.8100 -2.8690 12 14 3.1853 4.6359 -4.3487 13 1 1.7006 4.6627 -4.3587 14 1 3.7008 5.3165 -5.5638 15 1 3.6549 3.2272 -4.3335 16 6 5.4811 2.9194 0.0248 17 6 5.7072 2.7637 1.5300 18 6 6.2642 3.9696 2.2892 19 6 7.1534 2.7510 2.0294 20 8 1.6492 2.0859 1.2146 21 6 1.2961 3.4615 1.0559 22 1 -0.3634 -1.0242 0.0846 23 1 -0.3633 0.5852 0.8446 24 1 -0.3633 0.4388 -0.9293 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.8687 0.8536 -0.9746 28 1 3.9957 1.0110 0.7938 29 1 4.3718 2.8235 -2.3421 30 1 2.6956 3.1543 -1.8432 31 1 3.9091 7.3048 -3.6902 32 1 5.8539 3.8908 -0.3001 33 1 6.0130 2.1300 -0.5061 34 1 4.9896 2.1292 2.0500 35 1 6.4691 4.8741 1.7163 36 1 5.9132 4.1283 3.3088 37 1 7.3870 2.1085 2.8783 38 1 7.9436 2.8532 1.2857 39 1 1.0772 3.8952 2.0317 40 1 2.1259 3.9991 0.5973 41 1 0.4157 3.5394 0.4180 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412976641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:06 Heat of formation + Delta-G solvation = -42.594105 kcal Electronic energy + Delta-G solvation = -18534.571940 eV Core-core repulsion = 15835.618095 eV Total energy + Delta-G solvation = -2698.953845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.03765 -38.49686 -36.72765 -34.72613 -34.21188 -30.54330 -29.53353 -27.44576 -26.18110 -24.32806 -23.19222 -22.47206 -21.69146 -20.90057 -19.04526 -17.69077 -17.00949 -16.52708 -16.32466 -16.06165 -15.49357 -15.07103 -14.88296 -14.69291 -14.41399 -14.00626 -13.99773 -13.50726 -13.43270 -13.09757 -12.74464 -12.43807 -12.34772 -12.14694 -12.12914 -11.96644 -11.92091 -11.76535 -11.44177 -11.32705 -11.12116 -10.77810 -10.75191 -10.34360 -8.90981 -8.28415 -6.30638 1.31508 1.32935 1.42853 2.32142 2.86913 3.01640 3.05081 3.24999 3.84593 4.00068 4.10867 4.15290 4.25854 4.31884 4.44801 4.53170 4.58800 4.62510 4.63561 4.73060 4.76290 4.81065 4.81404 4.94987 5.00839 5.04250 5.09134 5.11114 5.12157 5.19836 5.26743 5.31508 5.44519 5.46514 5.54178 6.02167 6.36956 6.44571 6.67745 6.76068 7.32573 8.87873 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.010327 C = 0.006846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.601798 B = 2710.676768 C = 4089.281266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.044 0.956 5 C 0.033 3.967 6 N -0.530 5.530 7 C 0.172 3.828 8 C -0.507 4.507 9 H 0.039 0.961 10 C 0.011 3.989 11 N -0.946 5.946 12 Si 0.938 3.062 13 H -0.265 1.265 14 H -0.283 1.283 15 H -0.253 1.253 16 C 0.096 3.904 17 C -0.146 4.146 18 C -0.184 4.184 19 C -0.163 4.163 20 O -0.384 6.384 21 C 0.036 3.964 22 H 0.072 0.928 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.039 0.961 28 H 0.086 0.914 29 H -0.018 1.018 30 H 0.026 0.974 31 H 0.266 0.734 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.137 -14.044 6.737 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.033 3.967 4 H 0.062 0.938 5 C -0.095 4.095 6 N -0.253 5.253 7 C 0.045 3.955 8 C -0.545 4.545 9 H 0.058 0.942 10 C -0.187 4.187 11 N -0.586 5.586 12 Si 0.762 3.238 13 H -0.190 1.190 14 H -0.208 1.208 15 H -0.177 1.177 16 C -0.032 4.032 17 C -0.164 4.164 18 C -0.221 4.221 19 C -0.200 4.200 20 O -0.303 6.303 21 C -0.061 4.061 22 H 0.091 0.909 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.000 1.000 30 H 0.044 0.956 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.091 0.909 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.392 -13.695 7.132 15.625 hybrid contribution 0.260 0.272 -1.738 1.778 sum -2.132 -13.423 5.394 14.623 Atomic orbital electron populations 1.21686 0.94820 1.02359 1.01493 1.21629 0.97066 0.93448 1.03341 1.22242 0.92900 0.94437 0.87078 0.93797 1.22757 0.96330 0.89358 1.01099 1.61783 1.15654 1.19730 1.28179 1.19946 0.95212 0.94057 0.86238 1.21180 1.43245 0.92825 0.97254 0.94223 1.25765 0.95601 0.95351 1.01935 1.70040 1.50993 1.08792 1.28821 0.85855 0.79398 0.79684 0.78911 1.19019 1.20823 1.17654 1.21485 0.88030 0.99806 0.93853 1.22182 0.97191 1.02505 0.94551 1.22954 1.05038 0.92672 1.01413 1.23033 0.92658 1.00895 1.03461 1.87720 1.87076 1.23882 1.31594 1.22758 0.98827 0.82645 1.01830 0.90902 0.93038 0.93417 0.89793 0.90462 0.94322 0.89530 1.00010 0.95591 0.92534 0.92815 0.95325 0.87517 0.90864 0.87996 0.86691 0.89013 0.89492 0.93554 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.86 71.98 0.71 -2.46 16 2 C -0.12 -2.76 5.64 30.59 0.17 -2.59 16 3 C 0.09 2.89 2.29 30.59 0.07 2.96 16 4 H 0.04 1.55 6.07 -2.39 -0.01 1.53 16 5 C 0.03 1.08 4.44 86.30 0.38 1.46 16 6 N -0.53 -21.58 2.99 -900.79 -2.70 -24.28 16 7 C 0.17 8.16 3.43 85.56 0.29 8.46 16 8 C -0.51 -28.86 8.84 25.60 0.23 -28.63 16 9 H 0.04 2.54 7.50 -2.91 -0.02 2.51 16 10 C 0.01 0.63 5.47 84.66 0.46 1.09 16 11 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 12 Si 0.94 43.76 27.47 68.60 1.88 45.64 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 15 H -0.25 -11.07 6.54 99.48 0.65 -10.42 16 16 C 0.10 3.72 5.09 86.30 0.44 4.16 16 17 C -0.15 -4.66 5.60 -10.79 -0.06 -4.72 16 18 C -0.18 -5.64 10.18 30.62 0.31 -5.33 16 19 C -0.16 -4.22 10.25 30.62 0.31 -3.90 16 20 O -0.38 -12.96 9.75 -148.98 -1.45 -14.41 16 21 C 0.04 1.25 10.68 113.37 1.21 2.46 16 22 H 0.07 1.25 8.14 -2.38 -0.02 1.24 16 23 H 0.05 1.22 7.68 -2.39 -0.02 1.20 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.22 8.04 -2.39 -0.02 1.20 16 28 H 0.09 2.63 6.45 -2.39 -0.02 2.61 16 29 H -0.02 -0.85 7.18 -2.39 -0.02 -0.87 16 30 H 0.03 1.22 5.80 -2.39 -0.01 1.21 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.05 2.47 6.32 -2.39 -0.02 2.45 16 33 H 0.03 1.05 8.05 -2.39 -0.02 1.03 16 34 H 0.11 3.33 6.83 -2.39 -0.02 3.31 16 35 H 0.07 2.56 8.04 -2.38 -0.02 2.54 16 36 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.05 1.95 6.60 -2.39 -0.02 1.93 16 41 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -63.79 322.86 3.48 -60.30 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.91 Total: 18.22 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 4.53 Total: -27.04 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -2.40 Total: -82.72 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -1.45 Total: -14.41 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -63.79 3.48 -60.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412976641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.710 kcal (2) G-P(sol) polarization free energy of solvation -63.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds