Wall clock time and date at job start Sun Mar 29 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09001 * 109.47194 * 55.00423 * 3 2 1 5 5 C 1.53001 * 109.46839 * 175.00106 * 3 2 1 6 6 N 1.46902 * 109.46811 * 185.80852 * 5 3 2 7 7 C 1.46897 * 110.99963 * 209.01683 * 6 5 3 8 8 C 1.50700 * 109.46999 * 170.00027 * 7 6 5 9 9 H 1.08000 * 120.00565 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00135 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00217 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47182 * 59.99836 * 12 10 8 14 14 H 1.48496 * 109.46889 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47152 * 299.99646 * 12 10 8 16 16 C 1.46905 * 110.99971 * 85.06693 * 6 5 3 17 17 C 1.53000 * 109.47230 * 286.39789 * 16 6 5 18 18 C 1.53002 * 117.50009 * 113.59328 * 17 16 6 19 19 C 1.52995 * 117.50299 * 182.25827 * 17 16 6 20 20 O 1.42892 * 109.47194 * 295.00171 * 3 2 1 21 21 C 1.42898 * 114.00263 * 143.30930 * 20 3 2 22 22 H 1.08999 * 109.46833 * 59.99707 * 1 2 3 23 23 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46917 * 299.99902 * 1 2 3 25 25 H 1.09004 * 109.47278 * 239.99880 * 2 1 3 26 26 H 1.08998 * 109.47354 * 120.00308 * 2 1 3 27 27 H 1.08993 * 109.47309 * 65.80956 * 5 3 2 28 28 H 1.09001 * 109.47383 * 305.80402 * 5 3 2 29 29 H 1.08996 * 109.47362 * 290.00251 * 7 6 5 30 30 H 1.09003 * 109.46870 * 50.00403 * 7 6 5 31 31 H 0.97003 * 120.00218 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47318 * 166.40065 * 16 6 5 33 33 H 1.08998 * 109.47050 * 46.40068 * 16 6 5 34 34 H 1.08999 * 115.54716 * 327.92618 * 17 16 6 35 35 H 1.08998 * 117.49930 * 215.00449 * 18 17 16 36 36 H 1.09001 * 117.49523 * 0.03205 * 18 17 16 37 37 H 1.08999 * 117.49425 * 359.97244 * 19 17 16 38 38 H 1.09000 * 117.50644 * 144.99671 * 19 17 16 39 39 H 1.08998 * 109.47027 * 298.34343 * 21 20 3 40 40 H 1.09001 * 109.47141 * 58.34286 * 21 20 3 41 41 H 1.08999 * 109.47331 * 178.34374 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0430 2.8262 0.2655 7 6 5.3985 2.9721 -0.2814 8 6 5.7592 4.4339 -0.3467 9 1 5.0524 5.1799 -0.0146 10 6 6.9916 4.8190 -0.8303 11 7 7.8526 3.9106 -1.2343 12 14 7.4390 6.6308 -0.9105 13 1 7.3914 7.2133 0.4546 14 1 8.8092 6.7783 -1.4636 15 1 6.4723 7.3411 -1.7858 16 6 3.9914 3.2618 1.6676 17 6 2.5371 3.5144 2.0700 18 6 1.9228 2.5857 3.1193 19 6 2.2753 4.0293 3.4867 20 8 1.6620 2.0814 -1.2210 21 6 1.3098 3.4582 -1.0717 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.0035 0.9965 -0.7660 28 1 3.8578 0.8679 1.0033 29 1 6.1079 2.4512 0.3616 30 1 5.4341 2.5441 -1.2833 31 1 8.7198 4.1814 -1.5742 32 1 4.5655 4.1811 1.7838 33 1 4.4153 2.4858 2.3050 34 1 1.8853 3.8760 1.2746 35 1 0.8670 2.3363 3.0143 36 1 2.5551 1.7950 3.5233 37 1 3.1391 4.1876 4.1322 38 1 1.4513 4.7296 3.6235 39 1 0.4467 3.5429 -0.4115 40 1 2.1503 4.0038 -0.6428 41 1 1.0638 3.8781 -2.0471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412976646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:09 Heat of formation + Delta-G solvation = -25.912306 kcal Electronic energy + Delta-G solvation = -18679.809711 eV Core-core repulsion = 15981.579244 eV Total energy + Delta-G solvation = -2698.230468 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.84865 -36.91598 -35.21485 -33.28877 -32.37716 -28.74606 -27.30871 -26.00427 -25.05251 -22.67895 -22.24020 -21.05167 -20.33526 -19.65752 -16.47614 -16.33349 -15.33962 -15.09483 -14.74113 -14.49817 -13.98616 -13.81681 -13.64799 -13.33718 -12.87114 -12.48693 -12.05410 -11.84293 -11.53467 -11.43256 -11.29405 -11.10049 -10.94525 -10.88819 -10.78336 -10.58344 -10.54710 -10.24764 -10.00664 -9.71130 -9.40289 -9.25304 -8.84441 -8.41849 -7.17053 -6.00932 -4.02233 3.33965 3.38271 3.40916 4.06704 4.35112 4.42652 4.72528 5.05930 5.15869 5.20566 5.34119 5.34714 5.39556 5.54698 5.73160 5.77420 5.81639 5.83318 5.93970 6.00393 6.04035 6.06769 6.10330 6.16440 6.26719 6.27522 6.28785 6.38021 6.49225 6.55417 6.60823 6.78738 7.33293 7.37449 7.81589 7.82078 8.13110 8.24617 8.56926 9.05103 9.61699 11.09860 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.007064 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.010646 B = 3963.082147 C = 4451.493454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C 0.087 3.913 4 H 0.074 0.926 5 C 0.036 3.964 6 N -0.530 5.530 7 C 0.195 3.805 8 C -0.507 4.507 9 H 0.062 0.938 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.897 3.103 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.276 1.276 16 C 0.088 3.912 17 C -0.140 4.140 18 C -0.191 4.191 19 C -0.183 4.183 20 O -0.378 6.378 21 C 0.032 3.968 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.031 0.969 29 H -0.012 1.012 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.090 0.910 33 H 0.021 0.979 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.020 0.980 40 H 0.075 0.925 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 -4.225 6.086 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C 0.029 3.971 4 H 0.092 0.908 5 C -0.093 4.093 6 N -0.254 5.254 7 C 0.071 3.929 8 C -0.545 4.545 9 H 0.081 0.919 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C -0.040 4.040 17 C -0.159 4.159 18 C -0.228 4.228 19 C -0.221 4.221 20 O -0.297 6.297 21 C -0.065 4.065 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.049 0.951 29 H 0.006 0.994 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.108 0.892 33 H 0.039 0.961 34 H 0.128 0.872 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.016 -4.039 5.545 14.713 hybrid contribution 0.916 0.559 0.625 1.242 sum -12.100 -3.480 6.171 14.021 Atomic orbital electron populations 1.21687 0.95858 1.00941 1.01858 1.21643 0.96071 0.96375 1.02185 1.22375 0.94243 0.92529 0.87984 0.90816 1.22638 0.95264 0.91139 1.00266 1.61945 1.28493 1.18918 1.16003 1.19733 0.81472 0.97204 0.94536 1.21120 0.99631 0.91946 1.41836 0.91940 1.24982 0.96411 0.97612 0.95552 1.69951 1.07607 1.33027 1.43205 0.86582 0.77379 0.85253 0.78312 1.20344 1.21408 1.20175 1.21688 0.92358 1.00874 0.89097 1.22695 0.98978 1.02482 0.91729 1.23048 1.00866 0.93564 1.05287 1.22946 1.03070 0.96572 0.99518 1.87777 1.87304 1.23514 1.31104 1.22852 0.99049 0.83580 1.01006 0.92162 0.93230 0.93352 0.91446 0.91378 0.91247 0.95051 0.99371 0.95013 0.92904 0.89166 0.96058 0.87179 0.89545 0.89264 0.89036 0.89297 0.96111 0.90681 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 37.16 0.36 -1.32 16 2 C -0.12 -1.65 5.64 -26.73 -0.15 -1.80 16 3 C 0.09 1.38 2.17 -26.73 -0.06 1.32 16 4 H 0.07 1.12 3.71 -51.93 -0.19 0.92 16 5 C 0.04 0.67 4.71 -3.82 -0.02 0.65 16 6 N -0.53 -11.17 2.92 -236.07 -0.69 -11.86 16 7 C 0.20 5.08 4.66 -4.98 -0.02 5.06 16 8 C -0.51 -14.06 8.26 -34.44 -0.28 -14.35 16 9 H 0.06 1.71 7.28 -52.49 -0.38 1.32 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 12 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 C 0.09 1.67 5.07 -3.82 -0.02 1.66 16 17 C -0.14 -2.16 3.90 -90.62 -0.35 -2.51 16 18 C -0.19 -2.45 9.02 -26.69 -0.24 -2.69 16 19 C -0.18 -2.40 10.25 -26.69 -0.27 -2.67 16 20 O -0.38 -6.71 9.85 -35.23 -0.35 -7.06 16 21 C 0.03 0.51 9.58 101.05 0.97 1.48 16 22 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 1.39 7.57 -51.93 -0.39 0.99 16 28 H 0.03 0.55 7.58 -51.93 -0.39 0.16 16 29 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 30 H 0.03 0.90 7.79 -51.93 -0.40 0.50 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.09 1.91 6.58 -51.93 -0.34 1.57 16 33 H 0.02 0.40 7.44 -51.93 -0.39 0.01 16 34 H 0.11 1.74 4.93 -51.93 -0.26 1.49 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.09 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.29 7.97 -51.93 -0.41 -0.13 16 40 H 0.07 1.37 5.66 -51.93 -0.29 1.08 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 319.38 15.07 4.81 4.81 Total: -1.00 -29.24 319.38 -7.91 -37.16 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.22 Total: 0.09 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.19 Total: -13.71 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.05 Total: -37.89 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.35 Total: -7.06 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.24 -7.91 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412976646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.244 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds