Wall clock time and date at job start Sun Mar 29 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47205 * 2 1 4 4 H 1.09001 * 109.47194 * 55.00423 * 3 2 1 5 5 C 1.53001 * 109.46839 * 175.00106 * 3 2 1 6 6 N 1.46902 * 109.46811 * 185.80852 * 5 3 2 7 7 C 1.46897 * 110.99963 * 209.01683 * 6 5 3 8 8 C 1.50700 * 109.46999 * 170.00027 * 7 6 5 9 9 H 1.08000 * 120.00565 * 0.02562 * 8 7 6 10 10 C 1.37882 * 120.00135 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00217 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47182 * 59.99836 * 12 10 8 14 14 H 1.48496 * 109.46889 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47152 * 299.99646 * 12 10 8 16 16 C 1.46905 * 110.99971 * 85.06693 * 6 5 3 17 17 C 1.53000 * 109.47230 * 286.39789 * 16 6 5 18 18 C 1.53002 * 117.50009 * 113.59328 * 17 16 6 19 19 C 1.52995 * 117.50299 * 182.25827 * 17 16 6 20 20 O 1.42892 * 109.47194 * 295.00171 * 3 2 1 21 21 C 1.42898 * 114.00263 * 143.30930 * 20 3 2 22 22 H 1.08999 * 109.46833 * 59.99707 * 1 2 3 23 23 H 1.08997 * 109.46814 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.46917 * 299.99902 * 1 2 3 25 25 H 1.09004 * 109.47278 * 239.99880 * 2 1 3 26 26 H 1.08998 * 109.47354 * 120.00308 * 2 1 3 27 27 H 1.08993 * 109.47309 * 65.80956 * 5 3 2 28 28 H 1.09001 * 109.47383 * 305.80402 * 5 3 2 29 29 H 1.08996 * 109.47362 * 290.00251 * 7 6 5 30 30 H 1.09003 * 109.46870 * 50.00403 * 7 6 5 31 31 H 0.97003 * 120.00218 * 180.02562 * 11 10 8 32 32 H 1.09001 * 109.47318 * 166.40065 * 16 6 5 33 33 H 1.08998 * 109.47050 * 46.40068 * 16 6 5 34 34 H 1.08999 * 115.54716 * 327.92618 * 17 16 6 35 35 H 1.08998 * 117.49930 * 215.00449 * 18 17 16 36 36 H 1.09001 * 117.49523 * 0.03205 * 18 17 16 37 37 H 1.08999 * 117.49425 * 359.97244 * 19 17 16 38 38 H 1.09000 * 117.50644 * 144.99671 * 19 17 16 39 39 H 1.08998 * 109.47027 * 298.34343 * 21 20 3 40 40 H 1.09001 * 109.47141 * 58.34286 * 21 20 3 41 41 H 1.08999 * 109.47331 * 178.34374 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 7 4.0430 2.8262 0.2655 7 6 5.3985 2.9721 -0.2814 8 6 5.7592 4.4339 -0.3467 9 1 5.0524 5.1799 -0.0146 10 6 6.9916 4.8190 -0.8303 11 7 7.8526 3.9106 -1.2343 12 14 7.4390 6.6308 -0.9105 13 1 7.3914 7.2133 0.4546 14 1 8.8092 6.7783 -1.4636 15 1 6.4723 7.3411 -1.7858 16 6 3.9914 3.2618 1.6676 17 6 2.5371 3.5144 2.0700 18 6 1.9228 2.5857 3.1193 19 6 2.2753 4.0293 3.4867 20 8 1.6620 2.0814 -1.2210 21 6 1.3098 3.4582 -1.0717 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 4.0035 0.9965 -0.7660 28 1 3.8578 0.8679 1.0033 29 1 6.1079 2.4512 0.3616 30 1 5.4341 2.5441 -1.2833 31 1 8.7198 4.1814 -1.5742 32 1 4.5655 4.1811 1.7838 33 1 4.4153 2.4858 2.3050 34 1 1.8853 3.8760 1.2746 35 1 0.8670 2.3363 3.0143 36 1 2.5551 1.7950 3.5233 37 1 3.1391 4.1876 4.1322 38 1 1.4513 4.7296 3.6235 39 1 0.4467 3.5429 -0.4115 40 1 2.1503 4.0038 -0.6428 41 1 1.0638 3.8781 -2.0471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412976646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:08 Heat of formation + Delta-G solvation = -43.053936 kcal Electronic energy + Delta-G solvation = -18680.553028 eV Core-core repulsion = 15981.579244 eV Total energy + Delta-G solvation = -2698.973784 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24396 -38.18539 -36.79134 -34.73295 -34.18569 -30.27396 -29.04613 -27.38290 -26.66104 -24.24220 -23.27425 -22.50401 -21.81790 -20.97383 -18.52550 -17.73207 -16.77072 -16.62622 -16.33783 -15.90967 -15.52242 -15.24811 -14.86207 -14.63917 -14.32012 -13.98929 -13.61969 -13.49287 -13.06516 -12.85143 -12.78424 -12.64711 -12.34207 -12.21919 -12.20041 -11.97693 -11.88341 -11.85145 -11.42302 -11.35259 -11.03760 -10.64612 -10.49636 -10.34431 -8.91077 -8.20199 -6.30289 1.40049 1.43525 1.51294 2.39685 2.93443 3.09322 3.11718 3.22710 3.91472 4.00975 4.08817 4.18675 4.32250 4.36755 4.44340 4.48651 4.57707 4.61876 4.71057 4.81090 4.81689 4.85388 4.87369 5.00344 5.06554 5.12075 5.14378 5.14928 5.22461 5.28493 5.30838 5.32854 5.42152 5.50332 5.64948 6.05606 6.34766 6.55049 6.65642 6.86258 7.39189 8.90918 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.007064 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.010646 B = 3963.082147 C = 4451.493454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.093 3.907 4 H 0.088 0.912 5 C 0.035 3.965 6 N -0.529 5.529 7 C 0.212 3.788 8 C -0.519 4.519 9 H 0.064 0.936 10 C 0.000 4.000 11 N -0.936 5.936 12 Si 0.969 3.031 13 H -0.266 1.266 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.094 3.906 17 C -0.161 4.161 18 C -0.171 4.171 19 C -0.172 4.172 20 O -0.398 6.398 21 C 0.032 3.968 22 H 0.048 0.952 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.044 0.956 28 H 0.041 0.959 29 H -0.042 1.042 30 H -0.003 1.003 31 H 0.264 0.736 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.112 -3.632 7.503 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.035 3.965 4 H 0.106 0.894 5 C -0.094 4.094 6 N -0.253 5.253 7 C 0.085 3.915 8 C -0.557 4.557 9 H 0.082 0.918 10 C -0.197 4.197 11 N -0.577 5.577 12 Si 0.794 3.206 13 H -0.191 1.191 14 H -0.210 1.210 15 H -0.193 1.193 16 C -0.035 4.035 17 C -0.180 4.180 18 C -0.208 4.208 19 C -0.209 4.209 20 O -0.317 6.317 21 C -0.064 4.064 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.060 0.940 29 H -0.025 1.025 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.037 0.963 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.240 -3.451 6.977 17.113 hybrid contribution 1.609 0.320 0.201 1.653 sum -13.631 -3.131 7.179 15.721 Atomic orbital electron populations 1.21646 0.94016 1.02233 1.01912 1.21667 0.97619 0.94263 1.02577 1.22427 0.91731 0.94410 0.87915 0.89431 1.22751 0.97588 0.89574 0.99485 1.61932 1.24996 1.20774 1.17555 1.19351 0.83717 0.96064 0.92334 1.21403 0.99946 0.92651 1.41681 0.91764 1.25931 0.96262 1.02604 0.94947 1.70093 1.08073 1.35460 1.44066 0.85440 0.77149 0.79197 0.78862 1.19094 1.20958 1.19325 1.21605 0.95070 0.99179 0.87600 1.22419 0.96357 1.06044 0.93169 1.23134 1.01922 0.93380 1.02337 1.23051 1.03594 0.97395 0.96884 1.87763 1.87336 1.24287 1.32343 1.22871 0.98989 0.82595 1.01971 0.93257 0.91380 0.92105 0.92424 0.89726 0.93747 0.94045 1.02470 0.98523 0.92751 0.92094 0.96297 0.87381 0.87185 0.89100 0.89186 0.87204 0.93348 0.93260 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.81 71.98 0.71 -2.12 16 2 C -0.12 -3.03 5.64 30.59 0.17 -2.86 16 3 C 0.09 2.86 2.17 30.59 0.07 2.93 16 4 H 0.09 2.45 3.71 -2.39 -0.01 2.44 16 5 C 0.03 1.32 4.71 86.30 0.41 1.72 16 6 N -0.53 -23.12 2.92 -900.79 -2.63 -25.74 16 7 C 0.21 11.66 4.66 85.56 0.40 12.06 16 8 C -0.52 -29.79 8.26 25.60 0.21 -29.58 16 9 H 0.06 3.59 7.28 -2.91 -0.02 3.57 16 10 C 0.00 0.02 5.46 84.66 0.46 0.48 16 11 N -0.94 -57.59 13.29 21.45 0.28 -57.31 16 12 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 16 C 0.09 3.60 5.07 86.30 0.44 4.04 16 17 C -0.16 -4.70 3.90 -10.79 -0.04 -4.75 16 18 C -0.17 -3.80 9.02 30.62 0.28 -3.53 16 19 C -0.17 -4.00 10.25 30.62 0.31 -3.68 16 20 O -0.40 -13.91 9.85 -148.98 -1.47 -15.38 16 21 C 0.03 1.00 9.58 113.37 1.09 2.09 16 22 H 0.05 1.10 7.82 -2.39 -0.02 1.08 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.04 1.88 7.57 -2.39 -0.02 1.86 16 28 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 29 H -0.04 -2.53 8.12 -2.39 -0.02 -2.55 16 30 H 0.00 -0.20 7.79 -2.39 -0.02 -0.22 16 31 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.06 2.67 6.58 -2.39 -0.02 2.65 16 33 H 0.02 0.72 7.44 -2.39 -0.02 0.70 16 34 H 0.11 3.24 4.93 -2.39 -0.01 3.22 16 35 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.03 8.04 -2.39 -0.02 2.01 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 1.22 7.97 -2.39 -0.02 1.21 16 40 H 0.05 1.79 5.66 -2.39 -0.01 1.78 16 41 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.36 319.38 3.69 -61.67 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.11 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.49 Total: -23.19 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.34 Total: -83.05 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.47 Total: -15.38 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.36 3.69 -61.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412976646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.617 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds