Wall clock time and date at job start Sun Mar 29 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99927 * 2 1 4 4 C 1.53000 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47151 * 176.12705 * 4 3 2 6 6 N 1.46901 * 109.47316 * 296.12626 * 4 3 2 7 7 C 1.46898 * 111.00091 * 204.99607 * 6 4 3 8 8 C 1.53002 * 109.47023 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47359 * 300.00157 * 8 7 6 10 10 C 1.52993 * 109.46944 * 60.00320 * 8 7 6 11 11 C 1.50697 * 109.47062 * 180.02562 * 8 7 6 12 12 H 1.07998 * 120.00105 * 358.09356 * 11 8 7 13 13 C 1.37883 * 120.00236 * 178.08970 * 11 8 7 14 14 N 1.31519 * 119.99491 * 2.59872 * 13 11 8 15 15 Si 1.86796 * 120.00017 * 182.59735 * 13 11 8 16 16 H 1.48498 * 109.46967 * 94.99504 * 15 13 11 17 17 H 1.48502 * 109.46961 * 214.99077 * 15 13 11 18 18 H 1.48497 * 109.47201 * 334.99070 * 15 13 11 19 19 C 1.53001 * 109.47042 * 56.12395 * 4 3 2 20 20 C 1.52995 * 117.52177 * 226.58540 * 19 4 3 21 21 C 1.53001 * 117.50034 * 295.21980 * 19 4 3 22 22 H 1.08995 * 109.47028 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46940 * 300.00061 * 1 2 3 24 24 H 1.09005 * 109.46689 * 60.00447 * 1 2 3 25 25 H 1.08998 * 109.47257 * 59.99606 * 3 2 1 26 26 H 1.08998 * 109.46961 * 299.99601 * 3 2 1 27 27 H 1.00904 * 110.99873 * 81.04792 * 6 4 3 28 28 H 1.08995 * 109.47325 * 299.99856 * 7 6 4 29 29 H 1.09004 * 109.46694 * 60.00391 * 7 6 4 30 30 H 1.09007 * 109.46892 * 54.57437 * 9 8 7 31 31 H 1.08996 * 109.47300 * 174.57195 * 9 8 7 32 32 H 1.09004 * 109.47307 * 294.58073 * 9 8 7 33 33 H 1.08995 * 109.47433 * 60.00058 * 10 8 7 34 34 H 1.09007 * 109.47100 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.47414 * 299.99627 * 10 8 7 36 36 H 0.97000 * 119.99199 * 179.97438 * 14 13 11 37 37 H 1.09006 * 115.54681 * 80.88781 * 19 4 3 38 38 H 1.09000 * 117.50030 * 214.97384 * 20 19 4 39 39 H 1.09003 * 117.50084 * 359.97438 * 20 19 4 40 40 H 1.08992 * 117.49902 * 359.96811 * 21 19 4 41 41 H 1.09004 * 117.49879 * 144.99643 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1780 -0.0688 6 7 3.9750 0.5382 1.2444 7 6 5.3563 0.9146 1.5737 8 6 5.7772 0.2239 2.8725 9 6 4.8461 0.6584 4.0062 10 6 5.6906 -1.2932 2.6945 11 6 7.1940 0.6105 3.2106 12 1 7.7501 1.2570 2.5480 13 6 7.7802 0.1388 4.3660 14 7 7.1213 -0.6892 5.1470 15 14 9.5103 0.6758 4.8219 16 1 9.4409 1.8325 5.7506 17 1 10.2193 -0.4486 5.4839 18 1 10.2459 1.0704 3.5938 19 6 3.9809 0.3426 -1.1967 20 6 5.0119 -0.7588 -0.9420 21 6 3.5539 -1.1263 -1.2253 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8779 -0.4644 1.1847 28 1 6.0195 0.6054 0.7659 29 1 5.4178 1.9954 1.7009 30 1 3.8118 0.4667 3.7205 31 1 5.0843 0.0948 4.9082 32 1 4.9788 1.7233 4.1974 33 1 6.3539 -1.6027 1.8869 34 1 5.9910 -1.7852 3.6197 35 1 4.6657 -1.5725 2.4502 36 1 7.5339 -1.0212 5.9596 37 1 4.0330 0.8702 -2.1491 38 1 5.7422 -0.9558 -1.7268 39 1 5.3735 -0.8835 0.0787 40 1 2.9561 -1.4930 -0.3909 41 1 3.3250 -1.5651 -2.1965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414165163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:57 Heat of formation + Delta-G solvation = -19.302954 kcal Electronic energy + Delta-G solvation = -18720.006658 eV Core-core repulsion = 16022.062794 eV Total energy + Delta-G solvation = -2697.943865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.17788 -37.02446 -35.70268 -32.93509 -31.06672 -28.71524 -26.17723 -25.53286 -25.15676 -23.70669 -23.02922 -21.92204 -19.27485 -18.41082 -16.69270 -16.09371 -15.69704 -15.35091 -15.05854 -14.47457 -14.38676 -13.50880 -13.15850 -12.61021 -12.40876 -12.14548 -11.96526 -11.69684 -11.45667 -11.19173 -11.08056 -10.93031 -10.85853 -10.54847 -10.52272 -10.10475 -10.03762 -9.88349 -9.63685 -9.40553 -9.29342 -8.95190 -8.56257 -8.24644 -7.58854 -5.86900 -3.96373 3.33977 3.41250 3.44174 3.95286 4.20363 4.47440 4.78801 5.09251 5.21565 5.28808 5.33192 5.38975 5.41379 5.50658 5.59597 5.71168 5.79797 5.94058 6.03211 6.12017 6.25726 6.40959 6.46146 6.54964 6.59489 6.80200 6.95763 7.14345 7.23887 7.35199 7.44717 7.55031 7.81238 7.83266 7.90990 8.10410 8.27322 8.39904 8.61286 9.05390 9.68289 11.14058 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.006070 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.825403 B = 4611.446808 C = 4868.204443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.079 3.921 4 C 0.115 3.885 5 H 0.087 0.913 6 N -0.677 5.677 7 C 0.067 3.933 8 C 0.069 3.931 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.505 4.505 12 H 0.051 0.949 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.887 3.113 16 H -0.283 1.283 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.181 4.181 20 C -0.198 4.198 21 C -0.161 4.161 22 H 0.079 0.921 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.345 0.655 28 H 0.023 0.977 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.071 0.929 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.082 0.918 35 H 0.011 0.989 36 H 0.257 0.743 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.913 1.359 -10.656 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C 0.002 3.998 4 C 0.004 3.996 5 H 0.105 0.895 6 N -0.310 5.310 7 C -0.061 4.061 8 C 0.069 3.931 9 C -0.177 4.177 10 C -0.190 4.190 11 C -0.544 4.544 12 H 0.070 0.930 13 C -0.136 4.136 14 N -0.523 5.523 15 Si 0.716 3.284 16 H -0.209 1.209 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.201 4.201 20 C -0.235 4.235 21 C -0.198 4.198 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.167 0.833 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.101 0.899 35 H 0.029 0.971 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.049 1.563 -10.061 14.305 hybrid contribution 1.317 0.114 -0.522 1.421 sum -8.732 1.676 -10.583 13.822 Atomic orbital electron populations 1.22663 0.82408 1.02138 0.99328 1.87967 1.18380 1.27827 1.95220 1.22556 0.93398 0.84661 0.99220 1.21178 0.92590 0.97934 0.87935 0.89462 1.60736 1.24961 1.14813 1.30468 1.22304 0.85690 0.99545 0.98528 1.18083 0.94145 0.91393 0.89522 1.21641 0.96077 0.98731 1.01231 1.21856 0.95715 0.99545 1.01866 1.21123 0.97727 1.29410 1.06166 0.93035 1.24886 0.97303 0.94942 0.96422 1.69862 1.36848 1.32012 1.13617 0.86663 0.85106 0.78167 0.78500 1.20906 1.21391 1.20099 1.22922 1.04985 0.91915 1.00310 1.23395 0.92600 1.03331 1.04152 1.22883 0.97017 0.97064 1.02807 0.90197 0.94402 0.94875 0.92733 0.94097 0.83316 0.95885 0.92805 0.95935 0.91056 0.96271 0.96146 0.89936 0.97058 0.93285 0.88868 0.89586 0.86811 0.87431 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.20 7.66 -35.23 -0.27 -5.47 16 3 C 0.08 1.06 5.77 37.16 0.21 1.27 16 4 C 0.11 1.74 2.91 -67.71 -0.20 1.54 16 5 H 0.09 1.30 7.80 -51.93 -0.40 0.89 16 6 N -0.68 -12.34 5.12 -106.72 -0.55 -12.88 16 7 C 0.07 1.41 3.69 -3.82 -0.01 1.40 16 8 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 9 C -0.12 -2.95 8.06 37.16 0.30 -2.65 16 10 C -0.13 -3.16 7.31 37.15 0.27 -2.89 16 11 C -0.51 -13.69 8.01 -34.44 -0.28 -13.97 16 12 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 13 C 0.07 1.79 5.14 -17.82 -0.09 1.69 16 14 N -0.88 -24.75 9.42 55.43 0.52 -24.22 16 15 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.18 -2.60 5.77 -90.62 -0.52 -3.12 16 20 C -0.20 -3.07 8.77 -26.73 -0.23 -3.30 16 21 C -0.16 -2.28 8.66 -26.73 -0.23 -2.51 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.34 6.51 4.09 -39.29 -0.16 6.35 16 28 H 0.02 0.49 5.95 -51.93 -0.31 0.18 16 29 H 0.05 1.15 8.06 -51.93 -0.42 0.74 16 30 H 0.02 0.51 7.44 -51.93 -0.39 0.13 16 31 H 0.07 1.92 6.19 -51.93 -0.32 1.60 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.02 0.46 7.55 -51.93 -0.39 0.07 16 34 H 0.08 2.19 6.12 -51.92 -0.32 1.87 16 35 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 36 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.11 2.05 3.51 -51.93 -0.18 1.87 16 40 H 0.11 1.66 5.93 -51.93 -0.31 1.35 16 41 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 307.27 15.07 4.63 4.63 Total: -1.00 -27.56 307.27 -7.33 -34.89 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.89 Total: 6.26 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 0.24 Total: -19.49 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.02 Total: -37.11 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.27 Total: -5.47 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.56 -7.33 -34.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414165163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.590 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds