Wall clock time and date at job start Sun Mar 29 2020 22:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99927 * 2 1 4 4 C 1.53000 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47151 * 176.12705 * 4 3 2 6 6 N 1.46901 * 109.47316 * 296.12626 * 4 3 2 7 7 C 1.46898 * 111.00091 * 204.99607 * 6 4 3 8 8 C 1.53002 * 109.47023 * 179.97438 * 7 6 4 9 9 C 1.53002 * 109.47359 * 300.00157 * 8 7 6 10 10 C 1.52993 * 109.46944 * 60.00320 * 8 7 6 11 11 C 1.50697 * 109.47062 * 180.02562 * 8 7 6 12 12 H 1.07998 * 120.00105 * 358.09356 * 11 8 7 13 13 C 1.37883 * 120.00236 * 178.08970 * 11 8 7 14 14 N 1.31519 * 119.99491 * 2.59872 * 13 11 8 15 15 Si 1.86796 * 120.00017 * 182.59735 * 13 11 8 16 16 H 1.48498 * 109.46967 * 94.99504 * 15 13 11 17 17 H 1.48502 * 109.46961 * 214.99077 * 15 13 11 18 18 H 1.48497 * 109.47201 * 334.99070 * 15 13 11 19 19 C 1.53001 * 109.47042 * 56.12395 * 4 3 2 20 20 C 1.52995 * 117.52177 * 226.58540 * 19 4 3 21 21 C 1.53001 * 117.50034 * 295.21980 * 19 4 3 22 22 H 1.08995 * 109.47028 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46940 * 300.00061 * 1 2 3 24 24 H 1.09005 * 109.46689 * 60.00447 * 1 2 3 25 25 H 1.08998 * 109.47257 * 59.99606 * 3 2 1 26 26 H 1.08998 * 109.46961 * 299.99601 * 3 2 1 27 27 H 1.00904 * 110.99873 * 81.04792 * 6 4 3 28 28 H 1.08995 * 109.47325 * 299.99856 * 7 6 4 29 29 H 1.09004 * 109.46694 * 60.00391 * 7 6 4 30 30 H 1.09007 * 109.46892 * 54.57437 * 9 8 7 31 31 H 1.08996 * 109.47300 * 174.57195 * 9 8 7 32 32 H 1.09004 * 109.47307 * 294.58073 * 9 8 7 33 33 H 1.08995 * 109.47433 * 60.00058 * 10 8 7 34 34 H 1.09007 * 109.47100 * 179.97438 * 10 8 7 35 35 H 1.09004 * 109.47414 * 299.99627 * 10 8 7 36 36 H 0.97000 * 119.99199 * 179.97438 * 14 13 11 37 37 H 1.09006 * 115.54681 * 80.88781 * 19 4 3 38 38 H 1.09000 * 117.50030 * 214.97384 * 20 19 4 39 39 H 1.09003 * 117.50084 * 359.97438 * 20 19 4 40 40 H 1.08992 * 117.49902 * 359.96811 * 21 19 4 41 41 H 1.09004 * 117.49879 * 144.99643 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.9787 2.1780 -0.0688 6 7 3.9750 0.5382 1.2444 7 6 5.3563 0.9146 1.5737 8 6 5.7772 0.2239 2.8725 9 6 4.8461 0.6584 4.0062 10 6 5.6906 -1.2932 2.6945 11 6 7.1940 0.6105 3.2106 12 1 7.7501 1.2570 2.5480 13 6 7.7802 0.1388 4.3660 14 7 7.1213 -0.6892 5.1470 15 14 9.5103 0.6758 4.8219 16 1 9.4409 1.8325 5.7506 17 1 10.2193 -0.4486 5.4839 18 1 10.2459 1.0704 3.5938 19 6 3.9809 0.3426 -1.1967 20 6 5.0119 -0.7588 -0.9420 21 6 3.5539 -1.1263 -1.2253 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8463 -0.8900 27 1 3.8779 -0.4644 1.1847 28 1 6.0195 0.6054 0.7659 29 1 5.4178 1.9954 1.7009 30 1 3.8118 0.4667 3.7205 31 1 5.0843 0.0948 4.9082 32 1 4.9788 1.7233 4.1974 33 1 6.3539 -1.6027 1.8869 34 1 5.9910 -1.7852 3.6197 35 1 4.6657 -1.5725 2.4502 36 1 7.5339 -1.0212 5.9596 37 1 4.0330 0.8702 -2.1491 38 1 5.7422 -0.9558 -1.7268 39 1 5.3735 -0.8835 0.0787 40 1 2.9561 -1.4930 -0.3909 41 1 3.3250 -1.5651 -2.1965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414165163.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:56 Heat of formation + Delta-G solvation = -34.923836 kcal Electronic energy + Delta-G solvation = -18720.684031 eV Core-core repulsion = 16022.062794 eV Total energy + Delta-G solvation = -2698.621237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43042 -38.23292 -37.29989 -34.53084 -32.81272 -30.07849 -27.52821 -27.22485 -27.09015 -25.32714 -24.19062 -23.10907 -20.49013 -20.29002 -17.91332 -17.84262 -17.08820 -16.66803 -16.36460 -15.97415 -15.49498 -15.09574 -14.78010 -14.32463 -13.86802 -13.60927 -13.32672 -13.16168 -12.88790 -12.84488 -12.67774 -12.39402 -12.38738 -12.27144 -12.13475 -12.04954 -11.79658 -11.23220 -11.04669 -10.96088 -10.64882 -10.57110 -10.35245 -10.32604 -9.06640 -7.94940 -6.11033 1.42661 1.44912 1.53517 2.47913 2.92206 3.15213 3.27456 3.45612 3.90907 4.06481 4.15827 4.36781 4.43810 4.53983 4.65518 4.67083 4.69076 4.77602 4.85416 4.89465 4.91841 4.93748 4.98452 5.09535 5.17501 5.20255 5.25754 5.34777 5.44470 5.45794 5.58279 5.72705 5.78837 6.20562 6.29105 6.36311 6.47830 6.53943 6.71042 6.99147 7.56325 9.03804 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036128 B = 0.006070 C = 0.005750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.825403 B = 4611.446808 C = 4868.204443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.083 3.917 4 C 0.109 3.891 5 H 0.091 0.909 6 N -0.678 5.678 7 C 0.085 3.915 8 C 0.061 3.939 9 C -0.105 4.105 10 C -0.116 4.116 11 C -0.524 4.524 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.905 5.905 15 Si 0.944 3.056 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.173 4.173 20 C -0.214 4.214 21 C -0.148 4.148 22 H 0.089 0.911 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.341 0.659 28 H 0.020 0.980 29 H 0.046 0.954 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.009 0.991 33 H 0.018 0.982 34 H 0.053 0.947 35 H 0.026 0.974 36 H 0.256 0.744 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 1.848 -12.168 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.006 3.994 4 C -0.002 4.002 5 H 0.109 0.891 6 N -0.311 5.311 7 C -0.044 4.044 8 C 0.060 3.940 9 C -0.163 4.163 10 C -0.174 4.174 11 C -0.563 4.563 12 H 0.063 0.937 13 C -0.177 4.177 14 N -0.544 5.544 15 Si 0.771 3.229 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.193 4.193 20 C -0.251 4.251 21 C -0.185 4.185 22 H 0.108 0.892 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.038 0.962 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.773 2.060 -11.583 15.952 hybrid contribution 1.479 -0.052 -0.064 1.482 sum -9.293 2.008 -11.648 15.035 Atomic orbital electron populations 1.22821 0.80751 1.03150 1.00193 1.87931 1.20210 1.27977 1.95404 1.22476 0.91893 0.84862 1.00131 1.21324 0.94084 0.97863 0.86880 0.89131 1.60678 1.22918 1.14682 1.32838 1.21944 0.87328 0.98435 0.96679 1.18129 0.92978 0.91849 0.91033 1.21471 0.96857 0.97561 1.00371 1.21647 0.96488 0.99108 1.00192 1.21436 0.99163 1.29363 1.06290 0.93696 1.25545 1.00591 0.95077 0.96508 1.69997 1.38040 1.32594 1.13750 0.85762 0.81235 0.77719 0.78168 1.20643 1.21171 1.19699 1.22940 1.03859 0.91893 1.00628 1.23318 0.93661 1.05164 1.02916 1.22851 0.95455 0.96969 1.03219 0.89214 0.94341 0.93153 0.93430 0.91538 0.83747 0.96164 0.93535 0.94725 0.93575 0.97145 0.96311 0.92763 0.95496 0.93415 0.86847 0.88652 0.89549 0.88681 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.75 16 2 O -0.40 -10.08 7.66 -148.98 -1.14 -11.22 16 3 C 0.08 2.04 5.77 71.98 0.42 2.45 16 4 C 0.11 3.10 2.91 44.92 0.13 3.23 16 5 H 0.09 2.51 7.80 -2.39 -0.02 2.49 16 6 N -0.68 -24.12 5.12 -491.57 -2.51 -26.64 16 7 C 0.08 3.53 3.69 86.30 0.32 3.85 16 8 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 9 C -0.10 -5.23 8.06 71.98 0.58 -4.65 16 10 C -0.12 -5.63 7.31 71.98 0.53 -5.10 16 11 C -0.52 -28.59 8.01 25.60 0.21 -28.39 16 12 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 13 C 0.02 1.19 5.14 84.66 0.44 1.63 16 14 N -0.90 -51.31 9.42 21.45 0.20 -51.11 16 15 Si 0.94 43.87 29.54 68.60 2.03 45.89 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 C -0.17 -4.56 5.77 -10.79 -0.06 -4.62 16 20 C -0.21 -6.33 8.77 30.59 0.27 -6.06 16 21 C -0.15 -3.87 8.66 30.60 0.27 -3.61 16 22 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.34 12.62 4.09 -89.69 -0.37 12.26 16 28 H 0.02 0.85 5.95 -2.39 -0.01 0.84 16 29 H 0.05 1.98 8.06 -2.38 -0.02 1.96 16 30 H 0.03 1.59 7.44 -2.38 -0.02 1.57 16 31 H 0.05 2.52 6.19 -2.39 -0.01 2.51 16 32 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.02 0.86 7.55 -2.39 -0.02 0.84 16 34 H 0.05 2.92 6.12 -2.38 -0.01 2.91 16 35 H 0.03 1.17 6.57 -2.39 -0.02 1.15 16 36 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 37 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.09 3.08 3.51 -2.39 -0.01 3.07 16 40 H 0.09 2.77 5.93 -2.39 -0.01 2.76 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -58.18 307.27 3.50 -54.67 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.63 Total: 24.97 kcal Atomic # 6 Polarization: -40.87 SS G_CDS: 4.30 Total: -36.57 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -2.31 Total: -77.74 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: -1.14 Total: -11.22 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -58.18 3.50 -54.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414165163.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.748 kcal (2) G-P(sol) polarization free energy of solvation -58.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds