Wall clock time and date at job start Sun Mar 29 2020 22:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42895 * 114.00228 * 2 1 4 4 C 1.53000 * 109.47516 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47234 * 183.75732 * 4 3 2 6 6 N 1.46893 * 109.47414 * 63.75359 * 4 3 2 7 7 C 1.46899 * 111.00271 * 155.00096 * 6 4 3 8 8 C 1.53000 * 109.47294 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46863 * 300.00182 * 8 7 6 10 10 C 1.53001 * 109.47216 * 59.99990 * 8 7 6 11 11 C 1.50695 * 109.47176 * 180.02562 * 8 7 6 12 12 H 1.08003 * 119.99830 * 359.97438 * 11 8 7 13 13 C 1.37882 * 120.00195 * 180.02562 * 11 8 7 14 14 N 1.31517 * 119.99773 * 359.97438 * 13 11 8 15 15 Si 1.86799 * 120.00199 * 179.97438 * 13 11 8 16 16 H 1.48504 * 109.47011 * 59.99720 * 15 13 11 17 17 H 1.48494 * 109.46979 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47174 * 300.00008 * 15 13 11 19 19 C 1.53002 * 109.47109 * 303.75367 * 4 3 2 20 20 C 1.52999 * 117.49999 * 133.67363 * 19 4 3 21 21 C 1.53000 * 117.49559 * 65.01455 * 19 4 3 22 22 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47105 * 299.99485 * 1 2 3 24 24 H 1.09001 * 109.47174 * 60.00096 * 1 2 3 25 25 H 1.09000 * 109.47346 * 60.00175 * 3 2 1 26 26 H 1.09006 * 109.47258 * 300.00479 * 3 2 1 27 27 H 1.00901 * 111.00147 * 278.95992 * 6 4 3 28 28 H 1.09007 * 109.47282 * 299.99905 * 7 6 4 29 29 H 1.09000 * 109.47190 * 59.99950 * 7 6 4 30 30 H 1.08993 * 109.47627 * 60.00010 * 9 8 7 31 31 H 1.09003 * 109.47069 * 180.02562 * 9 8 7 32 32 H 1.09000 * 109.46789 * 299.99833 * 9 8 7 33 33 H 1.08998 * 109.47029 * 59.99667 * 10 8 7 34 34 H 1.09002 * 109.46999 * 180.02562 * 10 8 7 35 35 H 1.09005 * 109.46776 * 300.00119 * 10 8 7 36 36 H 0.96994 * 119.99698 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.55164 * 279.35110 * 19 4 3 38 38 H 1.08994 * 117.49661 * 0.02562 * 20 19 4 39 39 H 1.08993 * 117.49668 * 145.02167 * 20 19 4 40 40 H 1.09003 * 117.50155 * 214.98005 * 21 19 4 41 41 H 1.09000 * 117.49913 * 359.97438 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.9786 2.1782 0.0667 6 7 3.9748 0.5357 -1.2431 7 6 5.3559 0.9114 -1.5734 8 6 5.7767 0.2181 -2.8708 9 6 5.6902 -1.2987 -2.6896 10 6 4.8454 0.6502 -4.0052 11 6 7.1938 0.6031 -3.2093 12 1 7.7396 1.2754 -2.5639 13 6 7.7932 0.0978 -4.3436 14 7 7.1284 -0.7205 -5.1298 15 14 9.5496 0.5756 -4.7636 16 1 10.4535 0.1558 -3.6627 17 1 9.9580 -0.0974 -6.0227 18 1 9.6337 2.0478 -4.9389 19 6 3.9811 0.3452 1.1984 20 6 5.0166 -0.7526 0.9464 21 6 3.5587 -1.1251 1.2274 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5138 -0.8900 25 1 1.6887 1.8463 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 3.8776 -0.4668 -1.1814 28 1 5.4175 1.9920 -1.7029 29 1 6.0194 0.6040 -0.7650 30 1 4.6654 -1.5775 -2.4446 31 1 5.9904 -1.7927 -3.6138 32 1 6.3537 -1.6065 -1.8815 33 1 4.9070 1.7307 -4.1342 34 1 5.1449 0.1559 -4.9294 35 1 3.8206 0.3713 -3.7600 36 1 7.5503 -1.0762 -5.9275 37 1 4.0294 0.8737 2.1504 38 1 5.3807 -0.8765 -0.0734 39 1 5.7460 -0.9464 1.7328 40 1 3.3296 -1.5640 2.1985 41 1 2.9630 -1.4942 0.3925 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414165166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:59 Heat of formation + Delta-G solvation = -19.216975 kcal Electronic energy + Delta-G solvation = -18721.447565 eV Core-core repulsion = 16023.507429 eV Total energy + Delta-G solvation = -2697.940136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.17539 -37.02555 -35.70214 -32.93506 -31.06671 -28.71385 -26.17582 -25.53004 -25.16004 -23.70615 -23.02638 -21.92304 -19.27314 -18.41105 -16.69181 -16.09261 -15.69420 -15.35088 -15.05820 -14.48327 -14.38654 -13.50360 -13.16102 -12.61727 -12.40565 -12.14157 -11.96250 -11.69523 -11.45523 -11.17144 -11.07237 -10.93260 -10.85057 -10.59516 -10.50322 -10.11570 -10.02777 -9.88216 -9.63790 -9.40441 -9.29519 -8.95038 -8.57515 -8.24063 -7.58689 -5.86383 -3.96688 3.35586 3.40332 3.42964 3.95461 4.20339 4.47319 4.78973 5.09334 5.21543 5.28882 5.33227 5.38823 5.41509 5.50783 5.59657 5.71198 5.79900 5.94099 6.03311 6.12062 6.25831 6.40685 6.46228 6.55082 6.59630 6.80376 6.95792 7.14317 7.23679 7.35425 7.45159 7.54970 7.81201 7.82417 7.91047 8.10805 8.27714 8.40965 8.61589 9.04852 9.68021 11.14008 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036092 B = 0.006082 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.607812 B = 4602.572727 C = 4865.146287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.079 3.921 4 C 0.115 3.885 5 H 0.087 0.913 6 N -0.676 5.676 7 C 0.067 3.933 8 C 0.070 3.930 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.506 4.506 12 H 0.051 0.949 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.279 1.279 19 C -0.181 4.181 20 C -0.198 4.198 21 C -0.161 4.161 22 H 0.079 0.921 23 H 0.033 0.967 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.054 0.946 27 H 0.345 0.655 28 H 0.053 0.947 29 H 0.023 0.977 30 H 0.011 0.989 31 H 0.083 0.917 32 H 0.019 0.981 33 H 0.017 0.983 34 H 0.073 0.927 35 H 0.020 0.980 36 H 0.258 0.742 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.863 1.381 10.602 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C 0.002 3.998 4 C 0.004 3.996 5 H 0.105 0.895 6 N -0.310 5.310 7 C -0.061 4.061 8 C 0.069 3.931 9 C -0.190 4.190 10 C -0.177 4.177 11 C -0.544 4.544 12 H 0.069 0.931 13 C -0.136 4.136 14 N -0.524 5.524 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.214 1.214 18 H -0.205 1.205 19 C -0.201 4.201 20 C -0.235 4.235 21 C -0.198 4.198 22 H 0.098 0.902 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.167 0.833 28 H 0.072 0.928 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.000 1.581 10.001 14.230 hybrid contribution 1.328 0.083 0.574 1.449 sum -8.672 1.664 10.574 13.776 Atomic orbital electron populations 1.22663 0.82406 1.02137 0.99325 1.87963 1.18380 1.27831 1.95216 1.22556 0.93400 0.84660 0.99215 1.21177 0.92590 0.97935 0.87937 0.89467 1.60728 1.24968 1.14744 1.30536 1.22317 0.85703 0.99524 0.98539 1.18077 0.94097 0.91414 0.89511 1.21855 0.95721 0.99557 1.01910 1.21641 0.96120 0.98209 1.01721 1.21080 0.97691 1.27751 1.07917 0.93104 1.24883 0.97375 0.95072 0.96228 1.69828 1.36303 1.32032 1.14212 0.86735 0.85490 0.78604 0.77552 1.20505 1.21413 1.20456 1.22924 1.04947 0.91948 1.00303 1.23408 0.92548 1.03367 1.04170 1.22891 0.97049 0.97037 1.02805 0.90197 0.94886 0.94397 0.94101 0.92738 0.83311 0.92829 0.95870 0.97053 0.89850 0.96152 0.96403 0.90825 0.96110 0.93189 0.88871 0.86788 0.89586 0.90021 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.21 7.68 -35.23 -0.27 -5.48 16 3 C 0.08 1.06 5.77 37.16 0.21 1.27 16 4 C 0.11 1.74 2.91 -67.72 -0.20 1.55 16 5 H 0.09 1.30 7.80 -51.93 -0.40 0.89 16 6 N -0.68 -12.36 5.21 -106.73 -0.56 -12.92 16 7 C 0.07 1.41 3.69 -3.82 -0.01 1.40 16 8 C 0.07 1.69 0.57 -155.66 -0.09 1.61 16 9 C -0.13 -3.18 7.29 37.16 0.27 -2.91 16 10 C -0.12 -2.95 8.09 37.16 0.30 -2.65 16 11 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 12 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 13 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 14 N -0.88 -24.72 9.35 55.43 0.52 -24.21 16 15 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.18 -2.60 5.77 -90.62 -0.52 -3.13 16 20 C -0.20 -3.08 8.77 -26.69 -0.23 -3.31 16 21 C -0.16 -2.29 8.67 -26.69 -0.23 -2.52 16 22 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.34 6.53 4.09 -39.29 -0.16 6.36 16 28 H 0.05 1.15 8.06 -51.92 -0.42 0.73 16 29 H 0.02 0.49 5.93 -51.93 -0.31 0.18 16 30 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 31 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 32 H 0.02 0.46 7.55 -51.93 -0.39 0.07 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 35 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.11 2.06 3.50 -51.93 -0.18 1.88 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.11 1.66 5.93 -51.93 -0.31 1.35 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -27.50 307.30 -7.34 -34.84 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.89 Total: 6.39 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 0.24 Total: -19.52 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.04 Total: -37.12 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.27 Total: -5.48 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.50 -7.34 -34.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414165166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.625 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds