Wall clock time and date at job start Sun Mar 29 2020 22:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99640 * 2 1 4 4 H 1.09001 * 109.46994 * 17.00389 * 3 2 1 5 5 C 1.52990 * 109.47238 * 257.00348 * 3 2 1 6 6 C 1.53004 * 109.47462 * 67.66838 * 5 3 2 7 7 C 1.53001 * 109.46685 * 66.53984 * 6 5 3 8 8 C 1.52997 * 109.47103 * 186.54168 * 6 5 3 9 9 C 1.53002 * 109.46927 * 137.00110 * 3 2 1 10 10 N 1.46503 * 109.47170 * 300.00091 * 9 3 2 11 11 C 1.36938 * 119.99654 * 90.00024 * 10 9 3 12 12 H 1.07999 * 119.99956 * 303.79908 * 11 10 9 13 13 C 1.38809 * 119.99680 * 123.52777 * 11 10 9 14 14 N 1.31619 * 120.00031 * 173.08747 * 13 11 10 15 15 Si 1.86796 * 120.00183 * 353.08761 * 13 11 10 16 16 H 1.48498 * 109.47438 * 95.98870 * 15 13 11 17 17 H 1.48501 * 109.47495 * 215.98908 * 15 13 11 18 18 H 1.48503 * 109.47269 * 335.98976 * 15 13 11 19 19 C 1.46498 * 120.00068 * 270.00455 * 10 9 3 20 20 C 1.52999 * 117.49812 * 181.84119 * 19 10 9 21 21 C 1.53000 * 117.50362 * 113.18046 * 19 10 9 22 22 H 1.08998 * 109.47273 * 65.49398 * 1 2 3 23 23 H 1.09003 * 109.46667 * 185.48710 * 1 2 3 24 24 H 1.08994 * 109.47688 * 305.48524 * 1 2 3 25 25 H 1.09008 * 109.47113 * 187.66666 * 5 3 2 26 26 H 1.09004 * 109.47221 * 307.66706 * 5 3 2 27 27 H 1.08998 * 109.46695 * 306.53997 * 6 5 3 28 28 H 1.08994 * 109.47276 * 299.99902 * 7 6 5 29 29 H 1.08998 * 109.47543 * 60.00532 * 7 6 5 30 30 H 1.09000 * 109.46638 * 180.02562 * 7 6 5 31 31 H 1.08993 * 109.47421 * 59.99924 * 8 6 5 32 32 H 1.09004 * 109.46929 * 180.02562 * 8 6 5 33 33 H 1.09008 * 109.47226 * 299.99504 * 8 6 5 34 34 H 1.09000 * 109.46637 * 180.02562 * 9 3 2 35 35 H 1.09001 * 109.47055 * 60.00317 * 9 3 2 36 36 H 0.96999 * 120.00351 * 180.02562 * 14 13 11 37 37 H 1.09005 * 115.54680 * 327.50243 * 19 10 9 38 38 H 1.08999 * 117.50023 * 359.97438 * 20 19 10 39 39 H 1.09004 * 117.49907 * 145.01691 * 20 19 10 40 40 H 1.08999 * 117.49922 * 214.98042 * 21 19 10 41 41 H 1.09001 * 117.49230 * 359.97334 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.2601 2.0371 0.3005 5 6 2.5139 1.6396 -1.4054 6 6 1.3215 1.7909 -2.3522 7 6 0.5032 3.0192 -1.9492 8 6 1.8272 1.9627 -3.7859 9 6 3.1814 1.3424 0.9838 10 7 2.6990 1.0226 2.3296 11 6 2.6779 -0.2778 2.7583 12 1 2.1413 -1.0245 2.1919 13 6 3.3510 -0.6373 3.9178 14 7 3.2204 -1.8532 4.4045 15 14 4.4421 0.6046 4.7876 16 1 3.6770 1.2555 5.8813 17 1 5.6257 -0.0888 5.3563 18 1 4.8911 1.6347 3.8167 19 6 2.2390 2.0939 3.2167 20 6 1.7878 1.7003 4.6247 21 6 0.7527 2.1221 3.5788 22 1 -0.3634 0.4263 -0.9351 23 1 -0.3633 -1.0230 0.0983 24 1 -0.3634 0.5965 0.8367 25 1 3.0764 2.5729 -1.3776 26 1 3.1599 0.8365 -1.7603 27 1 0.6948 0.9011 -2.2921 28 1 0.1429 2.8968 -0.9278 29 1 1.1298 3.9090 -2.0092 30 1 -0.3466 3.1267 -2.6234 31 1 2.4102 1.0877 -4.0729 32 1 0.9777 2.0710 -4.4602 33 1 2.4539 2.8526 -3.8459 34 1 3.6244 2.3383 0.9841 35 1 3.9315 0.6108 0.6833 36 1 3.6905 -2.1043 5.2150 37 1 2.7470 3.0513 3.1002 38 1 1.8327 0.6443 4.8908 39 1 1.9985 2.3990 5.4344 40 1 0.2829 3.0981 3.7008 41 1 0.1171 1.3438 3.1566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419190640.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:19 Heat of formation + Delta-G solvation = -8.246881 kcal Electronic energy + Delta-G solvation = -18889.113568 eV Core-core repulsion = 16191.649131 eV Total energy + Delta-G solvation = -2697.464437 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.50567 -36.97557 -35.20541 -32.99645 -31.78388 -29.55426 -27.19148 -25.86375 -25.59222 -23.36208 -21.62763 -21.01461 -19.84695 -19.52939 -16.77656 -16.12360 -15.46243 -15.24492 -14.50679 -14.17404 -14.06928 -13.60701 -13.56350 -13.01510 -12.84987 -12.30627 -12.21324 -11.98837 -11.82470 -11.61737 -11.25850 -11.03093 -10.89979 -10.75434 -10.56632 -10.46087 -10.38937 -10.22356 -9.84575 -9.61680 -9.39373 -9.10587 -8.81282 -8.35321 -6.31730 -5.84339 -3.58824 3.43596 3.53786 3.61372 4.51578 4.62078 4.78066 4.91307 5.02580 5.05099 5.15270 5.42664 5.56106 5.64335 5.67797 5.78350 5.84071 5.85214 5.90512 5.92841 6.00929 6.05277 6.08333 6.08796 6.16002 6.21746 6.33736 6.38124 6.43822 6.48794 6.53238 6.58683 6.61907 6.89775 7.01579 7.28243 8.01386 8.24037 8.74477 9.15400 9.78079 10.25845 11.23444 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031137 B = 0.007299 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.038755 B = 3835.345293 C = 3944.125501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.071 3.929 4 H 0.055 0.945 5 C -0.133 4.133 6 C -0.101 4.101 7 C -0.149 4.149 8 C -0.144 4.144 9 C 0.148 3.852 10 N -0.570 5.570 11 C -0.265 4.265 12 H 0.082 0.918 13 C 0.046 3.954 14 N -0.907 5.907 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.309 1.309 18 H -0.270 1.270 19 C 0.110 3.890 20 C -0.203 4.203 21 C -0.216 4.216 22 H 0.028 0.972 23 H 0.073 0.927 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.262 0.738 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 9.685 -10.550 14.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.011 3.989 4 H 0.073 0.927 5 C -0.171 4.171 6 C -0.120 4.120 7 C -0.206 4.206 8 C -0.202 4.202 9 C 0.022 3.978 10 N -0.289 5.289 11 C -0.394 4.394 12 H 0.099 0.901 13 C -0.155 4.155 14 N -0.547 5.547 15 Si 0.721 3.279 16 H -0.202 1.202 17 H -0.237 1.237 18 H -0.195 1.195 19 C 0.002 3.998 20 C -0.240 4.240 21 C -0.256 4.256 22 H 0.046 0.954 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.783 9.369 -10.426 14.519 hybrid contribution 0.243 0.837 0.678 1.104 sum -3.540 10.206 -9.748 14.550 Atomic orbital electron populations 1.22710 0.83044 1.01750 0.98461 1.88005 1.17832 1.27070 1.94596 1.22979 0.97294 0.85033 0.93585 0.92691 1.22120 0.97588 1.01537 0.95853 1.21195 0.97395 0.98630 0.94764 1.21908 0.99544 0.97835 1.01305 1.21825 1.00637 1.01496 0.96194 1.21135 0.93448 0.98360 0.84828 1.43512 1.71820 1.03012 1.10557 1.18745 1.28357 0.83569 1.08700 0.90101 1.25958 0.96028 0.95177 0.98356 1.69816 1.43941 1.18786 1.22182 0.86733 0.79714 0.81616 0.79882 1.20155 1.23741 1.19480 1.21338 0.92840 0.92580 0.93047 1.23505 1.04885 1.03625 0.92027 1.23381 0.95344 1.00555 1.06351 0.95401 0.90858 0.94455 0.91691 0.91290 0.90776 0.92492 0.92879 0.93258 0.92764 0.93252 0.93009 0.93701 0.91850 0.92836 0.89738 0.86354 0.90687 0.91224 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.47 101.05 1.06 1.68 16 2 O -0.36 -7.09 8.91 -35.23 -0.31 -7.41 16 3 C 0.07 1.25 2.43 -26.74 -0.06 1.18 16 4 H 0.06 0.95 5.76 -51.93 -0.30 0.65 16 5 C -0.13 -1.88 4.36 -26.73 -0.12 -2.00 16 6 C -0.10 -1.25 2.56 -90.62 -0.23 -1.49 16 7 C -0.15 -1.69 8.98 37.16 0.33 -1.35 16 8 C -0.14 -1.52 9.19 37.16 0.34 -1.18 16 9 C 0.15 2.99 5.45 -4.04 -0.02 2.97 16 10 N -0.57 -13.44 2.06 -165.66 -0.34 -13.78 16 11 C -0.26 -7.37 8.74 -15.06 -0.13 -7.50 16 12 H 0.08 2.53 7.39 -52.49 -0.39 2.14 16 13 C 0.05 1.31 4.11 -17.43 -0.07 1.24 16 14 N -0.91 -27.76 13.97 55.49 0.78 -26.99 16 15 Si 0.89 22.63 24.02 -169.99 -4.08 18.55 16 16 H -0.28 -6.69 5.79 56.52 0.33 -6.36 16 17 H -0.31 -8.08 7.11 56.52 0.40 -7.68 16 18 H -0.27 -6.74 7.04 56.52 0.40 -6.35 16 19 C 0.11 2.37 4.93 -67.93 -0.34 2.03 16 20 C -0.20 -4.49 6.39 -26.69 -0.17 -4.66 16 21 C -0.22 -4.29 10.38 -26.69 -0.28 -4.57 16 22 H 0.03 0.39 5.95 -51.93 -0.31 0.08 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 24 H 0.04 0.64 8.01 -51.93 -0.42 0.23 16 25 H 0.06 0.84 8.13 -51.92 -0.42 0.42 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.07 1.00 5.68 -51.93 -0.30 0.70 16 28 H 0.06 0.70 6.47 -51.93 -0.34 0.37 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.06 1.36 8.04 -51.93 -0.42 0.95 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.12 3.05 5.07 -51.93 -0.26 2.79 16 39 H 0.07 1.53 7.74 -51.93 -0.40 1.12 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 LS Contribution 312.95 15.07 4.72 4.72 Total: -1.00 -30.14 312.95 -6.34 -36.48 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.41 Total: 2.06 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 0.31 Total: -13.64 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.43 Total: -40.76 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.31 Total: -7.41 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.08 Total: 18.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.14 -6.34 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419190640.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.235 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds