Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99443 * 2 1 4 4 H 1.08999 * 109.47507 * 13.23019 * 3 2 1 5 5 C 1.53007 * 109.46695 * 133.22866 * 3 2 1 6 6 C 1.53002 * 109.46945 * 296.51534 * 5 3 2 7 7 C 1.52996 * 109.47477 * 176.05838 * 6 5 3 8 8 C 1.53007 * 109.47129 * 296.06168 * 6 5 3 9 9 C 1.52996 * 109.47224 * 253.22195 * 3 2 1 10 10 N 1.46501 * 109.47234 * 62.51383 * 9 3 2 11 11 C 1.36936 * 119.99821 * 85.54883 * 10 9 3 12 12 H 1.08004 * 120.00008 * 334.62378 * 11 10 9 13 13 C 1.38816 * 120.00129 * 154.62312 * 11 10 9 14 14 N 1.31617 * 119.99890 * 159.16845 * 13 11 10 15 15 Si 1.86796 * 119.99567 * 339.17182 * 13 11 10 16 16 H 1.48497 * 109.47460 * 89.85256 * 15 13 11 17 17 H 1.48505 * 109.46818 * 209.84818 * 15 13 11 18 18 H 1.48497 * 109.47240 * 329.84603 * 15 13 11 19 19 C 1.46497 * 120.00012 * 265.27733 * 10 9 3 20 20 C 1.53002 * 117.49813 * 11.19699 * 19 10 9 21 21 C 1.53002 * 117.49721 * 302.57427 * 19 10 9 22 22 H 1.09005 * 109.47181 * 183.61689 * 1 2 3 23 23 H 1.09010 * 109.47094 * 303.60856 * 1 2 3 24 24 H 1.08996 * 109.47811 * 63.61145 * 1 2 3 25 25 H 1.09002 * 109.47278 * 56.51267 * 5 3 2 26 26 H 1.08998 * 109.47454 * 176.51897 * 5 3 2 27 27 H 1.09001 * 109.47349 * 56.05737 * 6 5 3 28 28 H 1.09001 * 109.47761 * 184.66875 * 7 6 5 29 29 H 1.09003 * 109.47284 * 304.67499 * 7 6 5 30 30 H 1.09001 * 109.46834 * 64.67122 * 7 6 5 31 31 H 1.08991 * 109.47137 * 59.99648 * 8 6 5 32 32 H 1.09000 * 109.47463 * 180.02562 * 8 6 5 33 33 H 1.09001 * 109.46653 * 299.99996 * 8 6 5 34 34 H 1.09003 * 109.47586 * 302.51055 * 9 3 2 35 35 H 1.09002 * 109.47048 * 182.51279 * 9 3 2 36 36 H 0.97001 * 119.99156 * 180.02562 * 14 13 11 37 37 H 1.09001 * 115.54860 * 156.90828 * 19 10 9 38 38 H 1.08996 * 117.49873 * 359.97438 * 20 19 10 39 39 H 1.09003 * 117.49532 * 145.02257 * 20 19 10 40 40 H 1.08997 * 117.49657 * 214.98109 * 21 19 10 41 41 H 1.08994 * 117.49673 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2440 2.0443 0.2352 5 6 3.1201 1.3696 1.0511 6 6 2.5182 1.1589 2.4419 7 6 3.6389 1.1249 3.4829 8 6 1.5595 2.3075 2.7621 9 6 2.5979 1.6022 -1.3810 10 7 1.5254 1.5999 -2.3790 11 6 0.7955 2.7368 -2.6022 12 1 0.7000 3.4788 -1.8233 13 6 0.1782 2.9355 -3.8296 14 7 -0.8293 3.7763 -3.9310 15 14 0.7775 2.0095 -5.3372 16 1 0.0435 0.7238 -5.4526 17 1 0.5335 2.8295 -6.5510 18 1 2.2318 1.7394 -5.2064 19 6 1.2378 0.3830 -3.1424 20 6 1.9016 -0.9152 -2.6789 21 6 2.3801 -0.2257 -3.9582 22 1 -0.3634 -1.0257 0.0648 23 1 -0.3634 0.5689 0.8560 24 1 -0.3634 0.4567 -0.9205 25 1 3.8551 0.5898 0.8514 26 1 3.6047 2.3451 1.0089 27 1 1.9739 0.2148 2.4631 28 1 3.2190 0.8924 4.4615 29 1 4.3664 0.3607 3.2088 30 1 4.1300 2.0973 3.5200 31 1 0.7611 2.3318 2.0205 32 1 1.1310 2.1577 3.7531 33 1 2.1038 3.2517 2.7409 34 1 3.3323 0.8379 -1.6352 35 1 3.0803 2.5796 -1.3683 36 1 -1.2608 3.9148 -4.7887 37 1 0.2316 0.3144 -3.5561 38 1 2.5527 -0.8638 -1.8062 39 1 1.3322 -1.8383 -2.7875 40 1 2.1254 -0.6951 -4.9084 41 1 3.3454 0.2795 -3.9272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419190654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = -7.783176 kcal Electronic energy + Delta-G solvation = -19007.156712 eV Core-core repulsion = 16309.712382 eV Total energy + Delta-G solvation = -2697.444329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.67880 -36.89726 -35.30802 -33.25266 -31.64644 -29.70443 -27.09767 -25.91603 -25.68390 -23.13179 -21.70047 -21.46790 -19.73559 -19.49790 -17.14396 -15.95910 -15.36046 -15.20000 -14.92257 -14.35097 -13.99270 -13.64026 -13.52880 -12.93719 -12.83532 -12.21162 -12.14902 -11.99421 -11.83850 -11.53220 -11.32121 -11.06191 -10.95873 -10.83200 -10.52400 -10.47027 -10.45164 -10.35782 -9.82152 -9.75033 -9.50080 -9.28513 -8.82686 -8.44618 -6.82602 -5.96750 -3.32807 3.40244 3.54677 3.64386 4.44150 4.55558 4.73411 4.85634 5.07340 5.09795 5.18129 5.38038 5.65907 5.70176 5.72734 5.80326 5.82424 5.89986 5.90964 5.94103 5.97477 6.01558 6.03250 6.14285 6.16928 6.30505 6.36287 6.40138 6.42943 6.50044 6.55324 6.60144 6.61981 6.79199 6.89068 6.97939 7.89075 7.96643 8.30100 8.94428 9.72181 10.05756 11.17699 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.007819 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.748023 B = 3580.214255 C = 3962.438399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.069 3.931 4 H 0.066 0.934 5 C -0.116 4.116 6 C -0.094 4.094 7 C -0.145 4.145 8 C -0.149 4.149 9 C 0.131 3.869 10 N -0.567 5.567 11 C -0.269 4.269 12 H 0.086 0.914 13 C 0.028 3.972 14 N -0.907 5.907 15 Si 0.886 3.114 16 H -0.292 1.292 17 H -0.311 1.311 18 H -0.258 1.258 19 C 0.124 3.876 20 C -0.194 4.194 21 C -0.237 4.237 22 H 0.066 0.934 23 H 0.026 0.974 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.262 0.738 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.186 -6.676 10.211 13.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.296 6.296 3 C 0.009 3.991 4 H 0.084 0.916 5 C -0.155 4.155 6 C -0.113 4.113 7 C -0.202 4.202 8 C -0.207 4.207 9 C 0.005 3.995 10 N -0.284 5.284 11 C -0.397 4.397 12 H 0.104 0.896 13 C -0.171 4.171 14 N -0.549 5.549 15 Si 0.717 3.283 16 H -0.219 1.219 17 H -0.240 1.240 18 H -0.182 1.182 19 C 0.014 3.986 20 C -0.233 4.233 21 C -0.278 4.278 22 H 0.085 0.915 23 H 0.044 0.956 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.166 -6.680 10.130 13.611 hybrid contribution 0.028 -0.246 -1.050 1.079 sum 6.195 -6.927 9.079 12.992 Atomic orbital electron populations 1.22692 0.81709 1.00674 1.00690 1.87733 1.19194 1.27643 1.95006 1.22891 0.95298 0.85243 0.95643 0.91572 1.21826 0.98145 1.01718 0.93767 1.21048 0.96292 0.99392 0.94556 1.21836 0.98490 1.01414 0.98473 1.21911 0.99593 0.98216 1.00938 1.21297 0.90432 0.99593 0.88191 1.43699 1.36311 1.06885 1.41461 1.18836 1.25309 0.97543 0.97974 0.89590 1.25243 0.97163 0.97003 0.97717 1.69861 1.21115 1.38697 1.25184 0.86901 0.81054 0.77649 0.82741 1.21934 1.23962 1.18201 1.21146 0.94664 0.85772 0.96970 1.23370 1.05321 0.96735 0.97862 1.23601 1.02155 1.07224 0.94828 0.91509 0.95570 0.92237 0.91757 0.91326 0.90824 0.93235 0.92924 0.93003 0.92297 0.93323 0.92886 0.93177 0.92344 0.92787 0.87443 0.87927 0.90402 0.90574 0.89656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.74 101.05 1.09 1.74 16 2 O -0.38 -6.54 7.21 -35.23 -0.25 -6.79 16 3 C 0.07 1.18 2.28 -26.73 -0.06 1.12 16 4 H 0.07 1.24 5.84 -51.93 -0.30 0.94 16 5 C -0.12 -1.62 4.41 -26.73 -0.12 -1.74 16 6 C -0.09 -1.18 2.86 -90.62 -0.26 -1.44 16 7 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 8 C -0.15 -1.87 8.93 37.16 0.33 -1.54 16 9 C 0.13 2.56 4.85 -4.04 -0.02 2.54 16 10 N -0.57 -13.07 2.17 -165.66 -0.36 -13.43 16 11 C -0.27 -7.29 10.07 -15.06 -0.15 -7.44 16 12 H 0.09 2.48 8.06 -52.48 -0.42 2.06 16 13 C 0.03 0.81 5.30 -17.43 -0.09 0.72 16 14 N -0.91 -27.49 13.97 55.49 0.78 -26.72 16 15 Si 0.89 22.62 23.47 -169.99 -3.99 18.63 16 16 H -0.29 -7.29 6.54 56.52 0.37 -6.92 16 17 H -0.31 -8.19 7.11 56.52 0.40 -7.78 16 18 H -0.26 -6.40 5.72 56.52 0.32 -6.08 16 19 C 0.12 2.73 3.19 -67.93 -0.22 2.51 16 20 C -0.19 -3.62 8.71 -26.73 -0.23 -3.85 16 21 C -0.24 -4.79 7.14 -26.73 -0.19 -4.98 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.03 0.41 8.06 -51.92 -0.42 -0.01 16 24 H 0.06 1.19 7.06 -51.93 -0.37 0.82 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.94 6.08 -51.93 -0.32 0.62 16 35 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.11 2.59 5.92 -51.93 -0.31 2.28 16 38 H 0.10 1.89 5.26 -51.93 -0.27 1.62 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.48 7.90 -51.93 -0.41 1.07 16 41 H 0.08 1.74 7.99 -51.93 -0.41 1.33 16 LS Contribution 309.80 15.07 4.67 4.67 Total: -1.00 -28.95 309.80 -6.18 -35.13 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -7.43 Total: 2.07 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 0.42 Total: -13.55 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.42 Total: -40.15 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.25 Total: -6.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -3.99 Total: 18.63 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.95 -6.18 -35.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419190654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.344 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds