Wall clock time and date at job start Sun Mar 29 2020 22:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99443 * 2 1 4 4 H 1.08999 * 109.47507 * 13.23019 * 3 2 1 5 5 C 1.53007 * 109.46695 * 133.22866 * 3 2 1 6 6 C 1.53002 * 109.46945 * 296.51534 * 5 3 2 7 7 C 1.52996 * 109.47477 * 176.05838 * 6 5 3 8 8 C 1.53007 * 109.47129 * 296.06168 * 6 5 3 9 9 C 1.52996 * 109.47224 * 253.22195 * 3 2 1 10 10 N 1.46501 * 109.47234 * 62.51383 * 9 3 2 11 11 C 1.36936 * 119.99821 * 85.54883 * 10 9 3 12 12 H 1.08004 * 120.00008 * 334.62378 * 11 10 9 13 13 C 1.38816 * 120.00129 * 154.62312 * 11 10 9 14 14 N 1.31617 * 119.99890 * 159.16845 * 13 11 10 15 15 Si 1.86796 * 119.99567 * 339.17182 * 13 11 10 16 16 H 1.48497 * 109.47460 * 89.85256 * 15 13 11 17 17 H 1.48505 * 109.46818 * 209.84818 * 15 13 11 18 18 H 1.48497 * 109.47240 * 329.84603 * 15 13 11 19 19 C 1.46497 * 120.00012 * 265.27733 * 10 9 3 20 20 C 1.53002 * 117.49813 * 11.19699 * 19 10 9 21 21 C 1.53002 * 117.49721 * 302.57427 * 19 10 9 22 22 H 1.09005 * 109.47181 * 183.61689 * 1 2 3 23 23 H 1.09010 * 109.47094 * 303.60856 * 1 2 3 24 24 H 1.08996 * 109.47811 * 63.61145 * 1 2 3 25 25 H 1.09002 * 109.47278 * 56.51267 * 5 3 2 26 26 H 1.08998 * 109.47454 * 176.51897 * 5 3 2 27 27 H 1.09001 * 109.47349 * 56.05737 * 6 5 3 28 28 H 1.09001 * 109.47761 * 184.66875 * 7 6 5 29 29 H 1.09003 * 109.47284 * 304.67499 * 7 6 5 30 30 H 1.09001 * 109.46834 * 64.67122 * 7 6 5 31 31 H 1.08991 * 109.47137 * 59.99648 * 8 6 5 32 32 H 1.09000 * 109.47463 * 180.02562 * 8 6 5 33 33 H 1.09001 * 109.46653 * 299.99996 * 8 6 5 34 34 H 1.09003 * 109.47586 * 302.51055 * 9 3 2 35 35 H 1.09002 * 109.47048 * 182.51279 * 9 3 2 36 36 H 0.97001 * 119.99156 * 180.02562 * 14 13 11 37 37 H 1.09001 * 115.54860 * 156.90828 * 19 10 9 38 38 H 1.08996 * 117.49873 * 359.97438 * 20 19 10 39 39 H 1.09003 * 117.49532 * 145.02257 * 20 19 10 40 40 H 1.08997 * 117.49657 * 214.98109 * 21 19 10 41 41 H 1.08994 * 117.49673 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.2440 2.0443 0.2352 5 6 3.1201 1.3696 1.0511 6 6 2.5182 1.1589 2.4419 7 6 3.6389 1.1249 3.4829 8 6 1.5595 2.3075 2.7621 9 6 2.5979 1.6022 -1.3810 10 7 1.5254 1.5999 -2.3790 11 6 0.7955 2.7368 -2.6022 12 1 0.7000 3.4788 -1.8233 13 6 0.1782 2.9355 -3.8296 14 7 -0.8293 3.7763 -3.9310 15 14 0.7775 2.0095 -5.3372 16 1 0.0435 0.7238 -5.4526 17 1 0.5335 2.8295 -6.5510 18 1 2.2318 1.7394 -5.2064 19 6 1.2378 0.3830 -3.1424 20 6 1.9016 -0.9152 -2.6789 21 6 2.3801 -0.2257 -3.9582 22 1 -0.3634 -1.0257 0.0648 23 1 -0.3634 0.5689 0.8560 24 1 -0.3634 0.4567 -0.9205 25 1 3.8551 0.5898 0.8514 26 1 3.6047 2.3451 1.0089 27 1 1.9739 0.2148 2.4631 28 1 3.2190 0.8924 4.4615 29 1 4.3664 0.3607 3.2088 30 1 4.1300 2.0973 3.5200 31 1 0.7611 2.3318 2.0205 32 1 1.1310 2.1577 3.7531 33 1 2.1038 3.2517 2.7409 34 1 3.3323 0.8379 -1.6352 35 1 3.0803 2.5796 -1.3683 36 1 -1.2608 3.9148 -4.7887 37 1 0.2316 0.3144 -3.5561 38 1 2.5527 -0.8638 -1.8062 39 1 1.3322 -1.8383 -2.7875 40 1 2.1254 -0.6951 -4.9084 41 1 3.3454 0.2795 -3.9272 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419190654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:21 Heat of formation + Delta-G solvation = -24.606178 kcal Electronic energy + Delta-G solvation = -19007.886212 eV Core-core repulsion = 16309.712382 eV Total energy + Delta-G solvation = -2698.173830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.16419 -38.41267 -36.46590 -35.12703 -33.49552 -31.25825 -28.03241 -27.50911 -27.02673 -24.97909 -23.25164 -22.93735 -21.39592 -20.68669 -18.97515 -17.45687 -17.24283 -16.55228 -16.43299 -15.78456 -15.38798 -15.26706 -14.92431 -14.59018 -14.02765 -13.88696 -13.46673 -13.33666 -13.19872 -13.01421 -12.82037 -12.67073 -12.38194 -12.27463 -12.22026 -11.88592 -11.78435 -11.54400 -11.41914 -11.37431 -11.14642 -10.99479 -10.58357 -10.24919 -8.70147 -8.16472 -5.46693 1.35475 1.46040 1.58938 2.46078 2.98562 3.08588 3.13445 3.36575 3.93954 4.09845 4.11326 4.12668 4.25861 4.35647 4.36737 4.52110 4.63537 4.69913 4.71291 4.78568 4.83438 4.84239 4.90006 4.96929 5.00983 5.04826 5.08435 5.10998 5.15908 5.24676 5.27896 5.41119 5.43432 5.51656 5.59335 5.84558 6.12840 6.50468 6.93947 7.65999 8.01828 9.01920 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029599 B = 0.007819 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.748023 B = 3580.214255 C = 3962.438399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.376 6.376 3 C 0.078 3.922 4 H 0.042 0.958 5 C -0.110 4.110 6 C -0.091 4.091 7 C -0.140 4.140 8 C -0.148 4.148 9 C 0.128 3.872 10 N -0.575 5.575 11 C -0.246 4.246 12 H 0.055 0.945 13 C -0.030 4.030 14 N -0.956 5.956 15 Si 0.946 3.054 16 H -0.284 1.284 17 H -0.325 1.325 18 H -0.244 1.244 19 C 0.090 3.910 20 C -0.157 4.157 21 C -0.231 4.231 22 H 0.092 0.908 23 H 0.032 0.968 24 H 0.022 0.978 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.259 0.741 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.124 -8.892 11.185 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.295 6.295 3 C 0.018 3.982 4 H 0.060 0.940 5 C -0.148 4.148 6 C -0.109 4.109 7 C -0.197 4.197 8 C -0.205 4.205 9 C 0.003 3.997 10 N -0.294 5.294 11 C -0.375 4.375 12 H 0.072 0.928 13 C -0.225 4.225 14 N -0.601 5.601 15 Si 0.776 3.224 16 H -0.211 1.211 17 H -0.255 1.255 18 H -0.168 1.168 19 C -0.018 4.018 20 C -0.196 4.196 21 C -0.272 4.272 22 H 0.110 0.890 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.145 -8.943 11.128 16.436 hybrid contribution -0.580 0.428 -1.242 1.435 sum 7.565 -8.515 9.886 15.083 Atomic orbital electron populations 1.22639 0.81506 1.01978 0.99072 1.87715 1.19321 1.27512 1.94918 1.22736 0.95566 0.84669 0.95256 0.93965 1.21787 0.97010 1.02505 0.93463 1.21007 0.96842 0.98731 0.94342 1.21784 0.97761 1.02030 0.98139 1.21896 0.99067 0.98580 1.00989 1.21494 0.89885 0.99971 0.88391 1.43681 1.37076 1.06142 1.42472 1.18739 1.24178 0.97944 0.96668 0.92758 1.25818 0.97664 0.98647 1.00325 1.69983 1.23054 1.41667 1.25438 0.85947 0.81143 0.76485 0.78843 1.21080 1.25506 1.16775 1.21107 0.94432 0.87099 0.99208 1.23350 1.03607 0.95431 0.97194 1.23631 1.00875 1.06673 0.96018 0.88971 0.94943 0.95879 0.90736 0.90656 0.91656 0.92193 0.92257 0.92455 0.94620 0.91913 0.92597 0.91569 0.92819 0.93185 0.89900 0.87242 0.88202 0.89450 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 10.74 113.37 1.22 2.69 16 2 O -0.38 -12.36 7.21 -148.98 -1.07 -13.43 16 3 C 0.08 2.58 2.28 30.60 0.07 2.65 16 4 H 0.04 1.62 5.84 -2.39 -0.01 1.60 16 5 C -0.11 -2.81 4.41 30.60 0.14 -2.68 16 6 C -0.09 -2.08 2.86 -10.79 -0.03 -2.11 16 7 C -0.14 -2.52 9.19 71.98 0.66 -1.86 16 8 C -0.15 -3.53 8.93 71.98 0.64 -2.89 16 9 C 0.13 4.83 4.85 86.38 0.42 5.25 16 10 N -0.58 -26.40 2.17 -678.02 -1.47 -27.88 16 11 C -0.25 -13.71 10.07 84.03 0.85 -12.87 16 12 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 13 C -0.03 -1.73 5.30 84.86 0.45 -1.28 16 14 N -0.96 -60.26 13.97 21.65 0.30 -59.96 16 15 Si 0.95 47.46 23.47 68.60 1.61 49.07 16 16 H -0.28 -13.70 6.54 99.48 0.65 -13.05 16 17 H -0.32 -16.91 7.11 99.48 0.71 -16.21 16 18 H -0.24 -11.52 5.72 99.48 0.57 -10.95 16 19 C 0.09 3.83 3.19 44.99 0.14 3.97 16 20 C -0.16 -5.32 8.71 30.60 0.27 -5.05 16 21 C -0.23 -8.59 7.14 30.60 0.22 -8.37 16 22 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 23 H 0.03 1.01 8.06 -2.38 -0.02 0.99 16 24 H 0.02 0.92 7.06 -2.39 -0.02 0.90 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.62 7.67 -2.39 -0.02 1.61 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.03 1.00 6.43 -2.39 -0.02 0.99 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 2.29 6.08 -2.39 -0.01 2.28 16 35 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 36 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.08 3.96 5.92 -2.39 -0.01 3.95 16 38 H 0.11 3.60 5.26 -2.39 -0.01 3.58 16 39 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.09 3.07 7.90 -2.39 -0.02 3.05 16 41 H 0.09 3.21 7.99 -2.39 -0.02 3.19 16 Total: -1.00 -63.26 309.80 5.18 -58.08 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.78 Total: 16.67 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 5.04 Total: -22.55 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -1.17 Total: -87.84 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -1.07 Total: -13.43 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 1.61 Total: 49.07 kcal Total: -63.26 5.18 -58.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419190654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.478 kcal (2) G-P(sol) polarization free energy of solvation -63.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds