Wall clock time and date at job start Sun Mar 29 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47034 * 2 1 4 4 C 1.53003 * 109.46949 * 174.56447 * 3 2 1 5 5 C 1.53000 * 109.90609 * 64.13709 * 4 3 2 6 6 O 1.42898 * 109.47662 * 293.63265 * 5 4 3 7 7 C 1.53999 * 109.91755 * 303.03907 * 4 3 2 8 8 C 1.54590 * 105.13924 * 241.87362 * 7 4 3 9 9 C 1.54941 * 102.92354 * 21.95550 * 8 7 4 10 10 N 1.47896 * 109.91753 * 185.24464 * 4 3 2 11 11 C 1.46899 * 110.99930 * 333.50743 * 10 4 3 12 12 C 1.53002 * 109.47091 * 170.00141 * 11 10 4 13 13 C 1.50697 * 109.47300 * 180.02562 * 12 11 10 14 14 H 1.08000 * 119.99854 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00304 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00234 * 179.97438 * 15 13 12 17 17 Si 1.86797 * 120.00108 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47220 * 89.99971 * 17 15 13 19 19 H 1.48498 * 109.47661 * 210.00270 * 17 15 13 20 20 H 1.48504 * 109.47087 * 330.00197 * 17 15 13 21 21 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46705 * 59.99712 * 1 2 3 23 23 H 1.09000 * 109.46910 * 300.00078 * 1 2 3 24 24 H 1.08998 * 109.46886 * 119.99848 * 2 1 3 25 25 H 1.08995 * 109.47312 * 239.99696 * 2 1 3 26 26 H 1.08998 * 109.47007 * 294.56207 * 3 2 1 27 27 H 1.09001 * 109.47069 * 54.56688 * 3 2 1 28 28 H 1.08999 * 109.46803 * 53.63379 * 5 4 3 29 29 H 1.09002 * 109.46758 * 173.63073 * 5 4 3 30 30 H 0.96695 * 114.00303 * 180.02562 * 6 5 4 31 31 H 1.09001 * 110.30818 * 0.78584 * 7 4 3 32 32 H 1.08998 * 110.31310 * 122.85606 * 7 4 3 33 33 H 1.09000 * 110.72682 * 140.31296 * 8 7 4 34 34 H 1.09005 * 110.72413 * 263.59555 * 8 7 4 35 35 H 1.09000 * 110.66481 * 81.01984 * 9 8 7 36 36 H 1.09003 * 110.66398 * 204.15309 * 9 8 7 37 37 H 1.08999 * 109.46909 * 289.99944 * 11 10 4 38 38 H 1.09003 * 109.47306 * 50.00232 * 11 10 4 39 39 H 1.09001 * 109.47190 * 300.00468 * 12 11 10 40 40 H 1.09003 * 109.46971 * 59.99886 * 12 11 10 41 41 H 0.97001 * 120.00531 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5639 1.4446 0.1366 5 6 4.1975 0.7773 -1.0857 6 8 3.8540 -0.6097 -1.1028 7 6 3.9769 0.6947 1.4167 8 6 4.6996 1.7486 2.2867 9 6 4.1578 3.0888 1.7290 10 7 4.0564 2.8333 0.2645 11 6 3.1339 3.7801 -0.3764 12 6 3.5379 5.2105 -0.0138 13 6 2.5913 6.1818 -0.6707 14 1 1.7827 5.8154 -1.2858 15 6 2.7581 7.5381 -0.4875 16 7 1.9323 8.3856 -1.0612 17 14 4.1572 8.1718 0.5757 18 1 5.3602 8.3893 -0.2673 19 1 3.7570 9.4547 1.2075 20 1 4.4667 7.1751 1.6322 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.7584 1.9274 -0.9347 27 1 1.5994 1.9837 0.8373 28 1 3.8271 1.2545 -1.9929 29 1 5.2813 0.8826 -1.0362 30 1 4.2229 -1.0970 -1.8521 31 1 3.0955 0.3166 1.9347 32 1 4.6528 -0.1251 1.1736 33 1 4.4316 1.6314 3.3367 34 1 5.7795 1.6838 2.1536 35 1 3.1774 3.3123 2.1497 36 1 4.8578 3.8999 1.9296 37 1 3.1771 3.6535 -1.4582 38 1 2.1185 3.5901 -0.0286 39 1 3.4949 5.3371 1.0680 40 1 4.5533 5.4006 -0.3617 41 1 2.0494 9.3398 -0.9320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444772143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:45 Heat of formation + Delta-G solvation = -79.244174 kcal Electronic energy + Delta-G solvation = -18658.572769 eV Core-core repulsion = 15958.029658 eV Total energy + Delta-G solvation = -2700.543111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18393 -37.46696 -35.68092 -35.07384 -33.78343 -31.54126 -30.40848 -27.21737 -26.37856 -25.51347 -23.41568 -22.39964 -21.17316 -19.58513 -18.89115 -18.09122 -16.81694 -16.75672 -16.36564 -16.01576 -15.60289 -15.37290 -14.80767 -14.59484 -14.29336 -13.94150 -13.69828 -13.38976 -13.26618 -13.06171 -12.89020 -12.49341 -12.37256 -12.12564 -12.05356 -11.82620 -11.72570 -11.60964 -11.49680 -11.42663 -11.34635 -11.02730 -10.78671 -10.56012 -9.28035 -8.32213 -6.36722 1.34344 1.35468 1.47923 2.34039 2.80390 3.03141 3.57722 3.72307 3.85994 3.93753 4.16025 4.27860 4.31514 4.38355 4.44467 4.48943 4.53742 4.58095 4.68298 4.70948 4.82938 4.88334 4.96377 5.04635 5.06813 5.07736 5.10695 5.20816 5.24708 5.30446 5.39611 5.45150 5.48840 5.59552 5.64780 6.03034 6.16199 6.27808 6.70665 6.98713 7.28014 8.84559 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027328 B = 0.006478 C = 0.005887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.359336 B = 4321.595021 C = 4755.209287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.127 4.127 4 C 0.089 3.911 5 C 0.107 3.893 6 O -0.567 6.567 7 C -0.107 4.107 8 C -0.117 4.117 9 C 0.032 3.968 10 N -0.517 5.517 11 C 0.072 3.928 12 C -0.002 4.002 13 C -0.533 4.533 14 H 0.030 0.970 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.248 1.248 21 H 0.066 0.934 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.031 0.969 39 H 0.020 0.980 40 H 0.018 0.982 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -19.546 5.000 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.166 4.166 4 C 0.000 4.000 5 C 0.028 3.972 6 O -0.375 6.375 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.095 4.095 10 N -0.241 5.241 11 C -0.056 4.056 12 C -0.040 4.040 13 C -0.572 4.572 14 H 0.049 0.951 15 C -0.190 4.190 16 N -0.590 5.590 17 Si 0.775 3.225 18 H -0.191 1.191 19 H -0.208 1.208 20 H -0.171 1.171 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.242 0.758 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.036 0.964 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.740 -19.140 5.243 20.659 hybrid contribution -0.519 0.991 -0.244 1.145 sum 5.221 -18.149 4.998 19.536 Atomic orbital electron populations 1.21826 0.96518 1.01820 1.00931 1.21618 0.94622 0.94833 1.03953 1.22094 0.95634 0.98562 1.00303 1.21827 0.92873 0.88758 0.96583 1.21721 0.98063 0.81712 0.95679 1.86443 1.77332 1.20470 1.53225 1.22407 1.00731 0.97776 0.93526 1.22526 1.00833 0.92593 0.99582 1.23296 0.99555 0.99194 0.87487 1.64836 1.45937 1.01437 1.11907 1.22039 0.93656 0.91873 0.98022 1.19490 0.95809 0.92460 0.96200 1.21389 1.13583 0.91760 1.30442 0.95137 1.25975 0.98998 0.97070 0.96938 1.70061 1.39842 1.02977 1.46150 0.85636 0.79126 0.77950 0.79808 1.19143 1.20769 1.17137 0.91449 0.93832 0.93737 0.91581 0.89339 0.93606 0.93906 0.94986 0.92743 0.75767 0.90863 0.89708 0.89518 0.90215 0.94781 0.90785 0.92697 0.95108 0.96155 0.96362 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.91 71.98 0.71 -2.78 16 2 C -0.11 -2.71 4.85 30.60 0.15 -2.56 16 3 C -0.13 -3.76 2.77 30.60 0.08 -3.68 16 4 C 0.09 2.50 0.59 3.67 0.00 2.51 16 5 C 0.11 2.60 6.08 71.98 0.44 3.04 16 6 O -0.57 -10.76 9.59 -148.98 -1.43 -12.18 16 7 C -0.11 -2.50 5.31 31.47 0.17 -2.33 16 8 C -0.12 -2.74 7.06 31.80 0.22 -2.52 16 9 C 0.03 1.01 5.11 86.56 0.44 1.45 16 10 N -0.52 -17.69 5.03 -832.79 -4.19 -21.88 16 11 C 0.07 3.02 3.99 86.30 0.34 3.36 16 12 C 0.00 -0.09 3.71 29.85 0.11 0.02 16 13 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 14 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 15 C 0.01 0.43 5.47 84.65 0.46 0.89 16 16 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 17 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.50 6.11 -2.39 -0.01 1.49 16 25 H 0.09 2.09 5.73 -2.39 -0.01 2.07 16 26 H 0.05 1.53 6.99 -2.39 -0.02 1.51 16 27 H 0.04 1.39 7.45 -2.39 -0.02 1.37 16 28 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.39 3.98 9.12 -74.06 -0.68 3.31 16 31 H 0.07 1.66 6.12 -2.39 -0.01 1.64 16 32 H 0.08 1.82 7.29 -2.39 -0.02 1.80 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.03 1.14 8.02 -2.39 -0.02 1.12 16 36 H 0.07 2.41 7.68 -2.39 -0.02 2.40 16 37 H 0.05 2.38 8.13 -2.39 -0.02 2.36 16 38 H 0.03 1.34 5.61 -2.39 -0.01 1.32 16 39 H 0.02 0.97 5.87 -2.39 -0.01 0.96 16 40 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -67.56 306.33 0.21 -67.34 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.26 Total: 13.85 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: 3.39 Total: -34.04 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.89 Total: -82.14 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.43 Total: -12.18 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -67.56 0.21 -67.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444772143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.899 kcal (2) G-P(sol) polarization free energy of solvation -67.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds