Wall clock time and date at job start Sun Mar 29 2020 22:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46927 * 2 1 4 4 C 1.53001 * 109.47343 * 183.68557 * 3 2 1 5 5 C 1.52999 * 110.00819 * 292.99890 * 4 3 2 6 6 O 1.42908 * 109.47238 * 66.28051 * 5 4 3 7 7 C 1.54317 * 109.89185 * 54.11346 * 4 3 2 8 8 C 1.55135 * 103.17795 * 141.77633 * 7 4 3 9 9 C 1.54906 * 101.65478 * 324.26512 * 8 7 4 10 10 N 1.47846 * 104.79496 * 37.06546 * 9 8 7 11 11 C 1.46904 * 110.99596 * 213.63925 * 10 9 8 12 12 C 1.53002 * 109.46847 * 290.12696 * 11 10 9 13 13 C 1.50710 * 109.46700 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00172 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99406 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00516 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99526 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47129 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47076 * 120.00075 * 17 15 13 20 20 H 1.48495 * 109.47464 * 239.99656 * 17 15 13 21 21 H 1.09001 * 109.47225 * 299.99818 * 1 2 3 22 22 H 1.08996 * 109.47752 * 60.00453 * 1 2 3 23 23 H 1.09007 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47225 * 240.00182 * 2 1 3 25 25 H 1.08996 * 109.47752 * 119.99547 * 2 1 3 26 26 H 1.09000 * 109.47367 * 63.68023 * 3 2 1 27 27 H 1.09007 * 109.47121 * 303.68439 * 3 2 1 28 28 H 1.09002 * 109.47390 * 186.28327 * 5 4 3 29 29 H 1.08998 * 109.47278 * 306.28420 * 5 4 3 30 30 H 0.96692 * 113.99987 * 179.97438 * 6 5 4 31 31 H 1.09004 * 110.70402 * 23.30814 * 7 4 3 32 32 H 1.09000 * 110.70837 * 260.25303 * 7 4 3 33 33 H 1.09001 * 110.98697 * 82.35616 * 8 7 4 34 34 H 1.08997 * 110.99361 * 206.12722 * 8 7 4 35 35 H 1.08995 * 110.37324 * 155.90198 * 9 8 7 36 36 H 1.09003 * 110.36650 * 278.12602 * 9 8 7 37 37 H 1.09002 * 109.47074 * 50.12658 * 11 10 9 38 38 H 1.09003 * 109.46711 * 170.13010 * 11 10 9 39 39 H 1.09002 * 109.47252 * 299.99852 * 12 11 10 40 40 H 1.08993 * 109.47107 * 60.00731 * 12 11 10 41 41 H 0.97007 * 120.00028 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5671 1.4436 -0.0927 5 6 4.1695 0.8541 1.1841 6 8 3.8292 -0.5308 1.2761 7 6 4.0194 0.6188 -1.3160 8 6 5.2241 1.4289 -1.8629 9 6 4.7721 2.8851 -1.5894 10 7 4.0615 2.8228 -0.2943 11 6 2.9560 3.7894 -0.2535 12 6 3.5222 5.2096 -0.1950 13 6 2.3880 6.2011 -0.1525 14 1 1.3657 5.8530 -0.1654 15 6 2.6556 7.5525 -0.0971 16 7 3.9004 7.9763 -0.0819 17 14 1.2497 8.7815 -0.0451 18 1 -0.0448 8.0543 -0.0732 19 1 1.3394 9.5837 1.2013 20 1 1.3370 9.6835 -1.2215 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.7314 1.9370 0.9211 27 1 1.6236 1.9751 -0.8552 28 1 5.2539 0.9607 1.1572 29 1 3.7738 1.3837 2.0507 30 1 4.1791 -0.9704 2.0630 31 1 3.2236 0.5628 -2.0587 32 1 4.3326 -0.3803 -1.0128 33 1 6.1352 1.1930 -1.3130 34 1 5.3590 1.2553 -2.9305 35 1 5.6375 3.5437 -1.5162 36 1 4.1005 3.2281 -2.3765 37 1 2.3436 3.6789 -1.1484 38 1 2.3449 3.6052 0.6301 39 1 4.1346 5.3200 0.6999 40 1 4.1332 5.3937 -1.0786 41 1 4.0886 8.9271 -0.0426 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000444772144.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:47 Heat of formation + Delta-G solvation = -82.830520 kcal Electronic energy + Delta-G solvation = -18566.540294 eV Core-core repulsion = 15865.841667 eV Total energy + Delta-G solvation = -2700.698627 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.12154 -37.42281 -35.62819 -35.20401 -33.58981 -31.37535 -30.12359 -27.24342 -26.30430 -25.63125 -23.47372 -22.19908 -21.54475 -19.39582 -18.56340 -18.04111 -16.88759 -16.78217 -16.42142 -16.01798 -15.58512 -15.16978 -14.71169 -14.44070 -14.19624 -13.87367 -13.79349 -13.37867 -13.15466 -12.87391 -12.84599 -12.64468 -12.38113 -12.22978 -12.04331 -11.84073 -11.73897 -11.67016 -11.49569 -11.29591 -11.22007 -11.05130 -10.56359 -10.52546 -9.17520 -8.21362 -6.32861 1.38461 1.38898 1.52289 2.38501 2.81446 3.11892 3.60895 3.71517 3.83596 3.96724 4.21273 4.28415 4.30285 4.36685 4.48525 4.51274 4.58904 4.61494 4.71826 4.76829 4.88216 4.90412 5.01628 5.05564 5.06185 5.12434 5.16580 5.21696 5.26435 5.38338 5.45435 5.49615 5.65313 5.68120 5.79119 6.09626 6.26906 6.33971 6.84447 7.00324 7.36371 8.91092 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025999 B = 0.006143 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.690455 B = 4556.841296 C = 5131.085902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.121 4.121 4 C 0.095 3.905 5 C 0.109 3.891 6 O -0.567 6.567 7 C -0.116 4.116 8 C -0.120 4.120 9 C 0.044 3.956 10 N -0.536 5.536 11 C 0.082 3.918 12 C 0.038 3.962 13 C -0.544 4.544 14 H 0.058 0.942 15 C 0.002 3.998 16 N -0.931 5.931 17 Si 0.965 3.035 18 H -0.263 1.263 19 H -0.276 1.276 20 H -0.277 1.277 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.393 0.607 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.019 0.981 38 H 0.063 0.937 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -18.311 0.013 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.159 4.159 4 C 0.006 3.994 5 C 0.031 3.969 6 O -0.375 6.375 7 C -0.154 4.154 8 C -0.158 4.158 9 C -0.084 4.084 10 N -0.261 5.261 11 C -0.046 4.046 12 C 0.000 4.000 13 C -0.582 4.582 14 H 0.076 0.924 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.202 1.202 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.109 0.891 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.242 0.758 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.081 0.919 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.854 -17.900 -0.128 17.921 hybrid contribution -0.675 1.129 -0.053 1.317 sum -1.529 -16.771 -0.181 16.842 Atomic orbital electron populations 1.21805 0.96240 1.01824 1.01073 1.21615 0.94915 0.94907 1.03795 1.22052 0.94495 0.98583 1.00762 1.21835 0.93682 0.87912 0.95992 1.21699 0.97920 0.81725 0.95588 1.86407 1.78795 1.22221 1.50077 1.22732 0.97339 0.99643 0.95687 1.22720 0.98563 0.92525 1.02020 1.22993 0.97681 0.98407 0.89315 1.63393 1.26012 1.03962 1.32693 1.22126 0.91629 0.92030 0.98765 1.18902 0.95147 0.91094 0.94826 1.21639 0.93599 0.92236 1.50724 0.92396 1.25956 0.98316 1.00706 0.94615 1.70118 1.20321 1.15262 1.51442 0.85396 0.79235 0.78487 0.77908 1.18657 1.20192 1.20235 0.93398 0.93812 0.91538 0.92124 0.89095 0.93053 0.93586 0.93325 0.94645 0.75753 0.91774 0.88773 0.90233 0.89270 0.91899 0.94977 0.96277 0.91878 0.99109 0.99183 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.91 71.98 0.71 -2.65 16 2 C -0.11 -2.76 5.01 30.59 0.15 -2.61 16 3 C -0.12 -3.61 2.90 30.60 0.09 -3.52 16 4 C 0.09 2.83 0.87 3.78 0.00 2.83 16 5 C 0.11 2.81 6.25 71.98 0.45 3.26 16 6 O -0.57 -11.10 9.40 -148.98 -1.40 -12.50 16 7 C -0.12 -2.94 4.65 31.77 0.15 -2.79 16 8 C -0.12 -3.08 7.08 31.98 0.23 -2.86 16 9 C 0.04 1.53 5.82 86.77 0.50 2.03 16 10 N -0.54 -20.15 4.80 -835.43 -4.01 -24.16 16 11 C 0.08 3.64 3.60 86.30 0.31 3.96 16 12 C 0.04 2.10 5.03 29.85 0.15 2.25 16 13 C -0.54 -31.94 9.11 25.60 0.23 -31.70 16 14 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 15 C 0.00 0.12 5.46 84.65 0.46 0.58 16 16 N -0.93 -57.92 13.29 21.45 0.28 -57.64 16 17 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 21 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.06 1.42 6.56 -2.39 -0.02 1.40 16 25 H 0.09 2.13 5.63 -2.39 -0.01 2.12 16 26 H 0.05 1.67 6.86 -2.39 -0.02 1.65 16 27 H 0.05 1.52 6.53 -2.38 -0.02 1.51 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.39 4.17 9.12 -74.06 -0.68 3.50 16 31 H 0.06 1.63 7.24 -2.38 -0.02 1.62 16 32 H 0.09 2.15 7.03 -2.39 -0.02 2.13 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.03 1.19 7.62 -2.39 -0.02 1.17 16 37 H 0.02 0.86 6.71 -2.39 -0.02 0.84 16 38 H 0.06 2.78 6.23 -2.39 -0.01 2.77 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H -0.01 -0.61 7.52 -2.39 -0.02 -0.63 16 41 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -66.91 310.40 0.66 -66.25 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.32 Total: 12.18 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.44 Total: -31.23 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.72 Total: -81.80 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -1.40 Total: -12.50 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -66.91 0.66 -66.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000444772144.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.584 kcal (2) G-P(sol) polarization free energy of solvation -66.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds