Wall clock time and date at job start Sun Mar 29 2020 22:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47334 * 175.92947 * 3 2 1 5 5 C 1.52994 * 109.88100 * 66.06464 * 4 3 2 6 6 O 1.42908 * 109.47076 * 54.82334 * 5 4 3 7 7 C 1.42907 * 113.99844 * 179.97438 * 6 5 4 8 8 C 1.54319 * 109.88864 * 187.26676 * 4 3 2 9 9 C 1.55131 * 103.02242 * 97.12260 * 8 4 3 10 10 C 1.54902 * 101.65383 * 35.65028 * 9 8 4 11 11 N 1.47448 * 109.88544 * 305.03394 * 4 3 2 12 12 C 1.46893 * 110.99687 * 117.33619 * 11 4 3 13 13 C 1.50708 * 109.46835 * 169.99919 * 12 11 4 14 14 H 1.07998 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99615 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00258 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99411 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47140 * 89.99635 * 17 15 13 19 19 H 1.48500 * 109.46972 * 209.99267 * 17 15 13 20 20 H 1.48498 * 109.47546 * 329.99661 * 17 15 13 21 21 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47202 * 299.99802 * 1 2 3 23 23 H 1.09004 * 109.46913 * 60.00203 * 1 2 3 24 24 H 1.09005 * 109.47351 * 240.00020 * 2 1 3 25 25 H 1.09003 * 109.47344 * 119.99484 * 2 1 3 26 26 H 1.09004 * 109.46884 * 295.92685 * 3 2 1 27 27 H 1.08995 * 109.47220 * 55.92766 * 3 2 1 28 28 H 1.09003 * 109.47463 * 174.82884 * 5 4 3 29 29 H 1.09002 * 109.47479 * 294.83079 * 5 4 3 30 30 H 1.09003 * 109.47212 * 300.00333 * 7 6 5 31 31 H 1.08997 * 109.46908 * 60.00428 * 7 6 5 32 32 H 1.08996 * 109.46707 * 180.02562 * 7 6 5 33 33 H 1.09007 * 110.70137 * 215.50605 * 8 4 3 34 34 H 1.09002 * 110.70705 * 338.73270 * 8 4 3 35 35 H 1.09010 * 110.98808 * 277.56052 * 9 8 4 36 36 H 1.09001 * 111.02934 * 153.76091 * 9 8 4 37 37 H 1.09008 * 110.37775 * 204.10458 * 10 9 8 38 38 H 1.09000 * 110.46833 * 81.81324 * 10 9 8 39 39 H 1.08994 * 109.47345 * 289.99719 * 12 11 4 40 40 H 1.08999 * 109.47406 * 50.00333 * 12 11 4 41 41 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5666 1.4437 0.1024 5 6 4.1732 0.8295 -1.1607 6 8 3.6806 1.5206 -2.3104 7 6 4.1889 1.0229 -3.5498 8 6 4.0792 2.8876 0.2866 9 6 4.2719 2.9970 1.8220 10 6 4.7587 1.5703 2.1786 11 7 3.9904 0.6753 1.2873 12 6 4.7904 -0.4935 0.8980 13 6 5.4078 -1.1112 2.1263 14 1 5.2245 -0.6785 3.0986 15 6 6.2075 -2.2282 2.0084 16 7 6.4311 -2.7549 0.8242 17 14 6.9733 -2.9934 3.5307 18 1 6.0523 -4.0169 4.0870 19 1 8.2632 -3.6333 3.1675 20 1 7.2132 -1.9383 4.5478 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7374 1.9348 -0.9243 27 1 1.6183 1.9769 0.8512 28 1 5.2591 0.9169 -1.1218 29 1 3.8954 -0.2227 -1.2227 30 1 5.2750 1.1147 -3.5602 31 1 3.9117 -0.0253 -3.6615 32 1 3.7679 1.6001 -4.3731 33 1 5.0275 3.0289 -0.2320 34 1 3.3378 3.6071 -0.0611 35 1 3.3283 3.2232 2.3188 36 1 5.0291 3.7411 2.0691 37 1 4.5405 1.3447 3.2225 38 1 5.8270 1.4727 1.9854 39 1 4.1494 -1.2253 0.4065 40 1 5.5787 -0.1824 0.2125 41 1 6.9935 -3.5409 0.7414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447405207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:51 Heat of formation + Delta-G solvation = -51.564666 kcal Electronic energy + Delta-G solvation = -18985.165271 eV Core-core repulsion = 16285.822434 eV Total energy + Delta-G solvation = -2699.342837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.53542 -36.79654 -34.00573 -33.08409 -30.96950 -30.16473 -26.77508 -26.16968 -25.53800 -24.06188 -22.56491 -20.72433 -20.37064 -18.01448 -16.52972 -15.79016 -15.44973 -15.37768 -14.71123 -14.43558 -14.18532 -13.92593 -13.16547 -12.96270 -12.54578 -12.49781 -12.12815 -11.85303 -11.69040 -11.29118 -11.24270 -11.00110 -10.88367 -10.78924 -10.63386 -10.54766 -10.21549 -10.03745 -9.86294 -9.84095 -9.67281 -9.21893 -8.98826 -8.47945 -7.16406 -6.06413 -4.07102 3.29886 3.36092 3.39292 4.12596 4.40794 4.95855 5.15242 5.26355 5.30759 5.48200 5.55608 5.59867 5.62956 5.66492 5.72266 5.84568 5.87337 5.92933 6.03700 6.15576 6.19413 6.24215 6.30439 6.40564 6.43490 6.45952 6.56465 6.72147 6.76271 6.83908 6.93256 7.10029 7.25618 7.41116 7.53162 7.77332 8.00979 8.21814 8.55022 9.00523 9.57315 11.04719 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.007755 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.440995 B = 3609.850175 C = 3725.699538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.121 4.121 3 C -0.083 4.083 4 C 0.104 3.896 5 C 0.054 3.946 6 O -0.393 6.393 7 C 0.034 3.966 8 C -0.123 4.123 9 C -0.135 4.135 10 C 0.060 3.940 11 N -0.512 5.512 12 C 0.181 3.819 13 C -0.513 4.513 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.050 0.950 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.034 0.966 40 H -0.003 1.003 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 8.658 -4.017 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.122 4.122 4 C 0.014 3.986 5 C -0.023 4.023 6 O -0.311 6.311 7 C -0.063 4.063 8 C -0.162 4.162 9 C -0.173 4.173 10 C -0.068 4.068 11 N -0.237 5.237 12 C 0.056 3.944 13 C -0.552 4.552 14 H 0.082 0.918 15 C -0.144 4.144 16 N -0.537 5.537 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.101 0.899 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.412 8.456 -3.834 11.284 hybrid contribution 1.525 -0.620 0.193 1.657 sum -4.888 7.836 -3.641 9.927 Atomic orbital electron populations 1.21755 0.97202 1.00712 1.00735 1.21474 0.94077 0.97379 1.02911 1.21423 0.93417 0.96894 1.00419 1.21672 0.95750 0.92241 0.88926 1.23260 0.97443 0.96423 0.85160 1.87789 1.69994 1.59302 1.13995 1.22646 0.98171 0.98853 0.86633 1.22749 1.00709 0.96646 0.96087 1.22783 1.00859 0.97955 0.95739 1.22812 0.96716 0.89252 0.98031 1.63827 1.40954 1.07116 1.11801 1.19988 0.90957 0.87117 0.96359 1.21255 1.28556 1.11697 0.93672 0.91847 1.24971 0.96538 0.96919 0.96012 1.69949 1.38682 1.22601 1.22432 0.86529 0.78541 0.79456 0.83086 1.20613 1.21350 1.19875 0.93465 0.93257 0.93706 0.93086 0.89933 0.92227 0.92604 0.93271 0.91843 0.94530 0.94285 0.90332 0.92057 0.91474 0.91486 0.91909 0.91146 0.93373 0.94830 0.98546 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -2.08 5.48 -26.73 -0.15 -2.23 16 3 C -0.08 -1.40 4.20 -26.73 -0.11 -1.51 16 4 C 0.10 1.92 0.64 -130.61 -0.08 1.84 16 5 C 0.05 1.03 3.07 37.15 0.11 1.15 16 6 O -0.39 -6.73 9.56 -35.23 -0.34 -7.06 16 7 C 0.03 0.48 11.01 101.05 1.11 1.59 16 8 C -0.12 -2.03 5.84 -24.91 -0.15 -2.17 16 9 C -0.14 -2.14 7.08 -24.60 -0.17 -2.32 16 10 C 0.06 1.18 5.39 -2.30 -0.01 1.16 16 11 N -0.51 -10.86 3.91 -217.17 -0.85 -11.71 16 12 C 0.18 4.57 3.63 -4.98 -0.02 4.55 16 13 C -0.51 -14.12 8.35 -34.44 -0.29 -14.41 16 14 H 0.06 1.72 6.66 -52.49 -0.35 1.37 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.92 6.95 -51.93 -0.36 0.56 16 25 H 0.08 1.64 7.35 -51.93 -0.38 1.26 16 26 H 0.06 0.97 7.39 -51.93 -0.38 0.59 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.05 1.01 6.75 -51.93 -0.35 0.66 16 29 H 0.06 1.33 5.45 -51.93 -0.28 1.04 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.03 7.79 -51.93 -0.40 0.62 16 34 H 0.07 1.01 7.83 -51.93 -0.41 0.60 16 35 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.39 7.69 -51.92 -0.40 0.99 16 38 H 0.05 1.03 7.55 -51.93 -0.39 0.64 16 39 H 0.03 0.92 7.25 -51.93 -0.38 0.54 16 40 H 0.00 -0.08 5.97 -51.93 -0.31 -0.39 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -28.65 313.90 -7.56 -36.21 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -7.34 Total: -0.58 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 0.52 Total: -12.57 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: -0.11 Total: -37.19 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.34 Total: -7.06 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.65 -7.56 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447405207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.353 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds