Wall clock time and date at job start Sun Mar 29 2020 22:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53004 * 109.47334 * 175.92947 * 3 2 1 5 5 C 1.52994 * 109.88100 * 66.06464 * 4 3 2 6 6 O 1.42908 * 109.47076 * 54.82334 * 5 4 3 7 7 C 1.42907 * 113.99844 * 179.97438 * 6 5 4 8 8 C 1.54319 * 109.88864 * 187.26676 * 4 3 2 9 9 C 1.55131 * 103.02242 * 97.12260 * 8 4 3 10 10 C 1.54902 * 101.65383 * 35.65028 * 9 8 4 11 11 N 1.47448 * 109.88544 * 305.03394 * 4 3 2 12 12 C 1.46893 * 110.99687 * 117.33619 * 11 4 3 13 13 C 1.50708 * 109.46835 * 169.99919 * 12 11 4 14 14 H 1.07998 * 119.99924 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99615 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00258 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99411 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47140 * 89.99635 * 17 15 13 19 19 H 1.48500 * 109.46972 * 209.99267 * 17 15 13 20 20 H 1.48498 * 109.47546 * 329.99661 * 17 15 13 21 21 H 1.08999 * 109.47012 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47202 * 299.99802 * 1 2 3 23 23 H 1.09004 * 109.46913 * 60.00203 * 1 2 3 24 24 H 1.09005 * 109.47351 * 240.00020 * 2 1 3 25 25 H 1.09003 * 109.47344 * 119.99484 * 2 1 3 26 26 H 1.09004 * 109.46884 * 295.92685 * 3 2 1 27 27 H 1.08995 * 109.47220 * 55.92766 * 3 2 1 28 28 H 1.09003 * 109.47463 * 174.82884 * 5 4 3 29 29 H 1.09002 * 109.47479 * 294.83079 * 5 4 3 30 30 H 1.09003 * 109.47212 * 300.00333 * 7 6 5 31 31 H 1.08997 * 109.46908 * 60.00428 * 7 6 5 32 32 H 1.08996 * 109.46707 * 180.02562 * 7 6 5 33 33 H 1.09007 * 110.70137 * 215.50605 * 8 4 3 34 34 H 1.09002 * 110.70705 * 338.73270 * 8 4 3 35 35 H 1.09010 * 110.98808 * 277.56052 * 9 8 4 36 36 H 1.09001 * 111.02934 * 153.76091 * 9 8 4 37 37 H 1.09008 * 110.37775 * 204.10458 * 10 9 8 38 38 H 1.09000 * 110.46833 * 81.81324 * 10 9 8 39 39 H 1.08994 * 109.47345 * 289.99719 * 12 11 4 40 40 H 1.08999 * 109.47406 * 50.00333 * 12 11 4 41 41 H 0.97002 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5666 1.4437 0.1024 5 6 4.1732 0.8295 -1.1607 6 8 3.6806 1.5206 -2.3104 7 6 4.1889 1.0229 -3.5498 8 6 4.0792 2.8876 0.2866 9 6 4.2719 2.9970 1.8220 10 6 4.7587 1.5703 2.1786 11 7 3.9904 0.6753 1.2873 12 6 4.7904 -0.4935 0.8980 13 6 5.4078 -1.1112 2.1263 14 1 5.2245 -0.6785 3.0986 15 6 6.2075 -2.2282 2.0084 16 7 6.4311 -2.7549 0.8242 17 14 6.9733 -2.9934 3.5307 18 1 6.0523 -4.0169 4.0870 19 1 8.2632 -3.6333 3.1675 20 1 7.2132 -1.9383 4.5478 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.7374 1.9348 -0.9243 27 1 1.6183 1.9769 0.8512 28 1 5.2591 0.9169 -1.1218 29 1 3.8954 -0.2227 -1.2227 30 1 5.2750 1.1147 -3.5602 31 1 3.9117 -0.0253 -3.6615 32 1 3.7679 1.6001 -4.3731 33 1 5.0275 3.0289 -0.2320 34 1 3.3378 3.6071 -0.0611 35 1 3.3283 3.2232 2.3188 36 1 5.0291 3.7411 2.0691 37 1 4.5405 1.3447 3.2225 38 1 5.8270 1.4727 1.9854 39 1 4.1494 -1.2253 0.4065 40 1 5.5787 -0.1824 0.2125 41 1 6.9935 -3.5409 0.7414 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447405207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:51 Heat of formation + Delta-G solvation = -69.125419 kcal Electronic energy + Delta-G solvation = -18985.926763 eV Core-core repulsion = 16285.822434 eV Total energy + Delta-G solvation = -2700.104329 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.07295 -38.21575 -35.53918 -34.95690 -32.73918 -31.59799 -28.31218 -27.86836 -26.94719 -25.52388 -24.37650 -22.28286 -21.78250 -19.56012 -18.44848 -17.38565 -17.11417 -16.87632 -16.35267 -15.92609 -15.79428 -15.23162 -14.76188 -14.40705 -14.27784 -13.95457 -13.68350 -13.44960 -13.16004 -12.89818 -12.70927 -12.67217 -12.44047 -12.26806 -12.22268 -12.06129 -11.75647 -11.71568 -11.40512 -11.22418 -11.16388 -11.09405 -10.69568 -10.51943 -8.92016 -8.22725 -6.31348 1.38593 1.39796 1.50455 2.38221 2.73579 3.11124 3.38969 3.71272 3.88600 4.00135 4.20464 4.27876 4.37527 4.40806 4.43573 4.49510 4.53169 4.58684 4.76418 4.79175 4.81967 4.92441 4.97779 5.02006 5.10185 5.12311 5.16136 5.19294 5.24724 5.33819 5.42824 5.51285 5.54966 5.65502 5.72257 6.00804 6.11602 6.33978 6.67664 6.86579 7.38220 8.88830 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.007755 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.440995 B = 3609.850175 C = 3725.699538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C -0.075 4.075 4 C 0.095 3.905 5 C 0.070 3.930 6 O -0.393 6.393 7 C 0.026 3.974 8 C -0.119 4.119 9 C -0.119 4.119 10 C 0.054 3.946 11 N -0.517 5.517 12 C 0.205 3.795 13 C -0.529 4.529 14 H 0.064 0.936 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.264 1.264 21 H 0.049 0.951 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.024 0.976 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.114 0.886 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.023 0.977 39 H 0.002 0.998 40 H -0.030 1.030 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 10.384 -3.431 12.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C -0.113 4.113 4 C 0.005 3.995 5 C -0.008 4.008 6 O -0.311 6.311 7 C -0.070 4.070 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.074 4.074 11 N -0.242 5.242 12 C 0.078 3.922 13 C -0.567 4.567 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.790 3.210 18 H -0.200 1.200 19 H -0.209 1.209 20 H -0.188 1.188 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.132 0.868 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.020 0.980 40 H -0.012 1.012 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.417 10.203 -3.251 13.026 hybrid contribution 1.826 -1.160 -0.081 2.165 sum -5.591 9.043 -3.331 11.142 Atomic orbital electron populations 1.21688 0.94449 1.01439 1.02070 1.21392 0.96472 0.97339 1.00397 1.21378 0.91781 0.96571 1.01541 1.21876 0.97046 0.93230 0.87299 1.22909 0.95888 0.95144 0.86813 1.87761 1.70007 1.59014 1.14316 1.22905 0.98564 0.99418 0.86128 1.22733 1.01005 0.95307 0.96642 1.22731 1.02341 0.95503 0.95100 1.22846 0.95237 0.91769 0.97508 1.63735 1.39997 1.07043 1.13421 1.19515 0.89728 0.88089 0.94820 1.21601 1.28771 1.12067 0.94303 0.91770 1.25872 0.97026 0.97430 0.99148 1.70081 1.39416 1.23110 1.24657 0.85445 0.77627 0.78651 0.79297 1.19975 1.20853 1.18790 0.93163 0.92127 0.92047 0.94930 0.93251 0.90941 0.91248 0.95762 0.94773 0.94463 0.94600 0.86823 0.92768 0.88908 0.89588 0.89470 0.91453 0.95885 0.97990 1.01214 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.91 71.98 0.71 -3.02 16 2 C -0.12 -4.09 5.48 30.59 0.17 -3.93 16 3 C -0.07 -2.41 4.20 30.60 0.13 -2.28 16 4 C 0.10 3.50 0.64 3.87 0.00 3.50 16 5 C 0.07 2.78 3.07 71.98 0.22 3.00 16 6 O -0.39 -13.27 9.56 -148.98 -1.42 -14.69 16 7 C 0.03 0.72 11.01 113.37 1.25 1.96 16 8 C -0.12 -3.65 5.84 31.77 0.19 -3.47 16 9 C -0.12 -3.46 7.08 31.97 0.23 -3.23 16 10 C 0.05 2.13 5.39 86.77 0.47 2.60 16 11 N -0.52 -22.46 3.91 -841.00 -3.29 -25.75 16 12 C 0.20 10.93 3.63 85.56 0.31 11.24 16 13 C -0.53 -30.07 8.35 25.60 0.21 -29.85 16 14 H 0.06 3.55 6.66 -2.91 -0.02 3.54 16 15 C 0.00 0.20 5.46 84.66 0.46 0.66 16 16 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 17 Si 0.97 44.58 29.54 68.60 2.03 46.61 16 18 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 20 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 21 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 24 H 0.03 1.21 6.95 -2.38 -0.02 1.20 16 25 H 0.05 2.02 7.35 -2.39 -0.02 2.01 16 26 H 0.07 2.18 7.39 -2.38 -0.02 2.16 16 27 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.02 1.07 6.75 -2.39 -0.02 1.05 16 29 H 0.03 1.54 5.45 -2.39 -0.01 1.53 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 1.75 7.79 -2.38 -0.02 1.73 16 34 H 0.09 2.43 7.83 -2.39 -0.02 2.41 16 35 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.64 7.69 -2.38 -0.02 2.62 16 38 H 0.02 1.00 7.55 -2.39 -0.02 0.98 16 39 H 0.00 0.12 7.25 -2.39 -0.02 0.11 16 40 H -0.03 -1.71 5.97 -2.39 -0.01 -1.73 16 41 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -63.64 313.90 2.92 -60.73 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.97 Total: 11.97 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 4.35 Total: -22.82 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -3.00 Total: -81.80 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.42 Total: -14.69 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.64 2.92 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447405207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.398 kcal (2) G-P(sol) polarization free energy of solvation -63.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds