Wall clock time and date at job start Sun Mar 29 2020 22:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 C 1.52995 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47251 * 305.00437 * 4 3 2 6 6 O 1.42905 * 109.47109 * 64.99826 * 4 3 2 7 7 C 1.52995 * 109.47676 * 185.00211 * 4 3 2 8 8 N 1.46501 * 109.47193 * 179.97438 * 7 4 3 9 9 C 1.36935 * 119.99838 * 93.54184 * 8 7 4 10 10 H 1.07998 * 120.00027 * 214.39040 * 9 8 7 11 11 C 1.38817 * 120.00154 * 34.66658 * 9 8 7 12 12 N 1.31619 * 119.99948 * 215.14261 * 11 9 8 13 13 Si 1.86800 * 119.99969 * 35.13984 * 11 9 8 14 14 H 1.48495 * 109.46933 * 92.62230 * 13 11 9 15 15 H 1.48498 * 109.47068 * 212.61822 * 13 11 9 16 16 H 1.48496 * 109.47041 * 332.61914 * 13 11 9 17 17 C 1.46495 * 120.00319 * 273.53658 * 8 7 4 18 18 C 1.54267 * 110.03372 * 242.42528 * 17 8 7 19 19 C 1.54967 * 104.15787 * 217.13652 * 18 17 8 20 20 C 1.54886 * 102.77863 * 37.88386 * 19 18 17 21 21 C 1.53872 * 110.03483 * 125.20355 * 17 8 7 22 22 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47037 * 299.99881 * 1 2 3 24 24 H 1.09008 * 109.47046 * 60.00056 * 1 2 3 25 25 H 1.09000 * 109.47464 * 240.00638 * 2 1 3 26 26 H 1.08993 * 109.47508 * 120.00015 * 2 1 3 27 27 H 1.09003 * 109.46965 * 59.99976 * 3 2 1 28 28 H 1.08998 * 109.47436 * 300.00318 * 3 2 1 29 29 H 0.96709 * 113.99535 * 60.00414 * 6 4 3 30 30 H 1.08998 * 109.47032 * 59.99815 * 7 4 3 31 31 H 1.09004 * 109.46965 * 300.00400 * 7 4 3 32 32 H 0.97003 * 120.00061 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.01402 * 3.81316 * 17 8 7 34 34 H 1.08997 * 110.48702 * 335.77731 * 18 17 8 35 35 H 1.08996 * 110.49015 * 98.42774 * 18 17 8 36 36 H 1.09007 * 110.71781 * 279.57032 * 19 18 17 37 37 H 1.08997 * 110.92623 * 156.29661 * 19 18 17 38 38 H 1.09001 * 110.48706 * 203.40308 * 20 19 18 39 39 H 1.09003 * 110.59624 * 80.81732 * 20 19 18 40 40 H 1.08998 * 110.03672 * 238.57712 * 21 17 8 41 41 H 1.09001 * 110.02836 * 359.95438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0468 0.8731 -1.2201 7 6 4.0799 2.8796 0.1264 8 7 5.5449 2.8796 0.1276 9 6 6.2305 3.0554 -1.0446 10 1 7.1690 2.5450 -1.2030 11 6 5.7221 3.8941 -2.0270 12 7 5.8941 3.5987 -3.2980 13 14 4.7938 5.4418 -1.5451 14 1 5.7378 6.5865 -1.4844 15 1 3.7407 5.7217 -2.5539 16 1 4.1651 5.2476 -0.2139 17 6 6.2764 2.6916 1.3829 18 6 7.1214 3.9439 1.6948 19 6 8.4232 3.3777 2.3163 20 6 8.6722 2.0967 1.4819 21 6 7.2618 1.5174 1.2480 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.7618 1.3475 -2.0132 30 1 3.7162 3.3140 1.0576 31 1 3.7168 3.4690 -0.7156 32 1 5.5385 4.1846 -3.9846 33 1 5.5773 2.5006 2.1971 34 1 7.3432 4.4922 0.7792 35 1 6.6044 4.5850 2.4087 36 1 8.2731 3.1309 3.3674 37 1 9.2479 4.0808 2.2002 38 1 9.2867 1.3909 2.0408 39 1 9.1455 2.3441 0.5317 40 1 7.0414 0.7570 1.9972 41 1 7.1951 1.0870 0.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450428855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:29 Heat of formation + Delta-G solvation = -51.347334 kcal Electronic energy + Delta-G solvation = -18790.075137 eV Core-core repulsion = 16090.741724 eV Total energy + Delta-G solvation = -2699.333413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.18321 -36.91847 -34.07655 -33.40310 -31.43563 -29.26226 -27.89864 -26.98695 -25.60000 -22.75956 -21.19331 -20.68663 -19.92976 -18.94275 -16.62418 -15.73462 -15.23779 -14.99307 -14.93245 -14.36064 -13.89971 -13.62627 -13.33457 -13.04895 -12.69051 -12.38379 -12.14212 -11.61672 -11.51108 -11.24706 -10.96317 -10.75070 -10.67259 -10.45674 -10.43821 -10.38697 -10.32883 -10.23832 -9.94774 -9.93117 -9.67999 -9.33108 -9.01955 -8.30281 -6.69878 -5.98797 -3.18741 3.37908 3.51323 3.56875 4.59911 4.81899 5.18864 5.19379 5.27204 5.37398 5.40383 5.44639 5.46682 5.67509 5.70640 5.92009 5.95494 6.03384 6.07559 6.12436 6.22365 6.23450 6.26431 6.35083 6.38439 6.43402 6.48178 6.55737 6.57376 6.59497 6.69363 6.78693 6.95515 6.99912 7.18827 7.24343 8.09938 8.48510 8.68013 9.10823 9.82796 10.25491 11.16979 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017926 B = 0.009545 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.606428 B = 2932.753081 C = 3793.908293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.154 4.154 4 C 0.089 3.911 5 H 0.080 0.920 6 O -0.541 6.541 7 C 0.120 3.880 8 N -0.588 5.588 9 C -0.244 4.244 10 H 0.077 0.923 11 C 0.040 3.960 12 N -0.880 5.880 13 Si 0.832 3.168 14 H -0.294 1.294 15 H -0.298 1.298 16 H -0.265 1.265 17 C 0.173 3.827 18 C -0.137 4.137 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.132 4.132 22 H 0.049 0.951 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.371 0.629 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 -3.497 8.928 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.193 4.193 4 C 0.027 3.973 5 H 0.098 0.902 6 O -0.345 6.345 7 C -0.007 4.007 8 N -0.308 5.308 9 C -0.372 4.372 10 H 0.095 0.905 11 C -0.160 4.160 12 N -0.520 5.520 13 Si 0.659 3.341 14 H -0.222 1.222 15 H -0.225 1.225 16 H -0.190 1.190 17 C 0.065 3.935 18 C -0.177 4.177 19 C -0.160 4.160 20 C -0.155 4.155 21 C -0.171 4.171 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.218 0.782 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.478 -3.891 9.147 10.902 hybrid contribution -0.861 1.585 -0.162 1.811 sum -5.339 -2.306 8.985 10.703 Atomic orbital electron populations 1.21799 0.96712 1.00984 1.01387 1.21436 0.94681 0.97183 1.02290 1.22380 0.98313 0.96759 1.01848 1.22560 0.89730 0.96755 0.88255 0.90187 1.86498 1.77498 1.55610 1.14935 1.21890 0.85463 0.94158 0.99196 1.44108 0.99576 1.83542 1.03590 1.18490 1.07138 1.21076 0.90460 0.90512 1.25352 0.97680 0.98170 0.94794 1.70119 1.46464 1.36010 0.99437 0.87615 0.79419 0.88288 0.78756 1.22167 1.22527 1.18961 1.21025 0.92234 0.92428 0.87769 1.22873 0.95277 0.99080 1.00448 1.22416 0.97987 0.97307 0.98251 1.22252 0.97431 0.96331 0.99521 1.22537 0.94412 0.98030 1.02148 0.93231 0.93207 0.92987 0.91380 0.92547 0.92074 0.92122 0.78242 0.94498 0.92528 0.93096 0.93326 0.90085 0.93647 0.92785 0.92755 0.93345 0.91733 0.93858 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.16 0.37 -1.37 16 2 C -0.12 -1.61 5.83 -26.73 -0.16 -1.77 16 3 C -0.15 -2.34 4.89 -26.73 -0.13 -2.47 16 4 C 0.09 1.64 3.24 -26.74 -0.09 1.56 16 5 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 6 O -0.54 -11.39 12.32 -35.23 -0.43 -11.83 16 7 C 0.12 2.48 3.62 -4.04 -0.01 2.46 16 8 N -0.59 -13.24 1.98 -164.40 -0.33 -13.56 16 9 C -0.24 -6.39 7.66 -15.06 -0.12 -6.51 16 10 H 0.08 2.23 7.09 -52.49 -0.37 1.86 16 11 C 0.04 1.10 5.01 -17.43 -0.09 1.01 16 12 N -0.88 -25.55 13.97 55.49 0.78 -24.78 16 13 Si 0.83 20.78 26.31 -169.99 -4.47 16.30 16 14 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 15 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 16 H -0.26 -6.32 5.82 56.52 0.33 -6.00 16 17 C 0.17 3.39 3.42 -66.82 -0.23 3.16 16 18 C -0.14 -2.58 6.43 -25.03 -0.16 -2.74 16 19 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 20 C -0.12 -1.98 6.83 -25.08 -0.17 -2.15 16 21 C -0.13 -2.47 6.12 -25.62 -0.16 -2.62 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.07 1.00 7.82 -51.93 -0.41 0.60 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.37 7.70 9.05 45.56 0.41 8.11 16 30 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.06 1.27 4.32 -51.93 -0.22 1.04 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 33 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.08 1.76 7.22 -51.93 -0.37 1.39 16 35 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 1.78 6.74 -51.93 -0.35 1.43 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -28.13 316.82 -7.64 -35.77 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.85 Total: 6.87 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -1.11 Total: -13.55 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.45 Total: -38.34 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.43 Total: -11.83 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.47 Total: 16.30 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.13 -7.64 -35.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450428855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.573 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds