Wall clock time and date at job start Sun Mar 29 2020 22:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 C 1.52995 * 109.47544 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47251 * 305.00437 * 4 3 2 6 6 O 1.42905 * 109.47109 * 64.99826 * 4 3 2 7 7 C 1.52995 * 109.47676 * 185.00211 * 4 3 2 8 8 N 1.46501 * 109.47193 * 179.97438 * 7 4 3 9 9 C 1.36935 * 119.99838 * 93.54184 * 8 7 4 10 10 H 1.07998 * 120.00027 * 214.39040 * 9 8 7 11 11 C 1.38817 * 120.00154 * 34.66658 * 9 8 7 12 12 N 1.31619 * 119.99948 * 215.14261 * 11 9 8 13 13 Si 1.86800 * 119.99969 * 35.13984 * 11 9 8 14 14 H 1.48495 * 109.46933 * 92.62230 * 13 11 9 15 15 H 1.48498 * 109.47068 * 212.61822 * 13 11 9 16 16 H 1.48496 * 109.47041 * 332.61914 * 13 11 9 17 17 C 1.46495 * 120.00319 * 273.53658 * 8 7 4 18 18 C 1.54267 * 110.03372 * 242.42528 * 17 8 7 19 19 C 1.54967 * 104.15787 * 217.13652 * 18 17 8 20 20 C 1.54886 * 102.77863 * 37.88386 * 19 18 17 21 21 C 1.53872 * 110.03483 * 125.20355 * 17 8 7 22 22 H 1.09005 * 109.47023 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47037 * 299.99881 * 1 2 3 24 24 H 1.09008 * 109.47046 * 60.00056 * 1 2 3 25 25 H 1.09000 * 109.47464 * 240.00638 * 2 1 3 26 26 H 1.08993 * 109.47508 * 120.00015 * 2 1 3 27 27 H 1.09003 * 109.46965 * 59.99976 * 3 2 1 28 28 H 1.08998 * 109.47436 * 300.00318 * 3 2 1 29 29 H 0.96709 * 113.99535 * 60.00414 * 6 4 3 30 30 H 1.08998 * 109.47032 * 59.99815 * 7 4 3 31 31 H 1.09004 * 109.46965 * 300.00400 * 7 4 3 32 32 H 0.97003 * 120.00061 * 179.97438 * 12 11 9 33 33 H 1.09001 * 110.01402 * 3.81316 * 17 8 7 34 34 H 1.08997 * 110.48702 * 335.77731 * 18 17 8 35 35 H 1.08996 * 110.49015 * 98.42774 * 18 17 8 36 36 H 1.09007 * 110.71781 * 279.57032 * 19 18 17 37 37 H 1.08997 * 110.92623 * 156.29661 * 19 18 17 38 38 H 1.09001 * 110.48706 * 203.40308 * 20 19 18 39 39 H 1.09003 * 110.59624 * 80.81732 * 20 19 18 40 40 H 1.08998 * 110.03672 * 238.57712 * 21 17 8 41 41 H 1.09001 * 110.02836 * 359.95438 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9330 0.8533 0.8427 6 8 4.0468 0.8731 -1.2201 7 6 4.0799 2.8796 0.1264 8 7 5.5449 2.8796 0.1276 9 6 6.2305 3.0554 -1.0446 10 1 7.1690 2.5450 -1.2030 11 6 5.7221 3.8941 -2.0270 12 7 5.8941 3.5987 -3.2980 13 14 4.7938 5.4418 -1.5451 14 1 5.7378 6.5865 -1.4844 15 1 3.7407 5.7217 -2.5539 16 1 4.1651 5.2476 -0.2139 17 6 6.2764 2.6916 1.3829 18 6 7.1214 3.9439 1.6948 19 6 8.4232 3.3777 2.3163 20 6 8.6722 2.0967 1.4819 21 6 7.2618 1.5174 1.2480 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 1.9564 -0.8899 29 1 3.7618 1.3475 -2.0132 30 1 3.7162 3.3140 1.0576 31 1 3.7168 3.4690 -0.7156 32 1 5.5385 4.1846 -3.9846 33 1 5.5773 2.5006 2.1971 34 1 7.3432 4.4922 0.7792 35 1 6.6044 4.5850 2.4087 36 1 8.2731 3.1309 3.3674 37 1 9.2479 4.0808 2.2002 38 1 9.2867 1.3909 2.0408 39 1 9.1455 2.3441 0.5317 40 1 7.0414 0.7570 1.9972 41 1 7.1951 1.0870 0.2488 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450428855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:29 Heat of formation + Delta-G solvation = -68.659901 kcal Electronic energy + Delta-G solvation = -18790.825866 eV Core-core repulsion = 16090.741724 eV Total energy + Delta-G solvation = -2700.084142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.77453 -38.38181 -35.68075 -34.79289 -33.41715 -30.70053 -29.36120 -28.52526 -27.18960 -24.42503 -22.65953 -21.96390 -21.31243 -20.64968 -18.46303 -17.34040 -16.88155 -16.54834 -16.49656 -15.95520 -15.36238 -15.07958 -14.85312 -14.41906 -14.13646 -14.04586 -13.92783 -13.03643 -12.79529 -12.72744 -12.60867 -12.33630 -12.16693 -12.07063 -11.92464 -11.81268 -11.73957 -11.62678 -11.48645 -11.34739 -11.28299 -11.13222 -10.62718 -10.34858 -8.57206 -8.11124 -5.26479 1.34989 1.47470 1.52710 2.52124 3.03153 3.42422 3.79988 3.95269 3.97543 4.04522 4.18905 4.23500 4.30042 4.41172 4.64391 4.67652 4.72116 4.76219 4.79296 4.89445 4.94459 4.95166 4.96470 5.00228 5.11527 5.18669 5.22383 5.22599 5.28895 5.32862 5.49968 5.50661 5.53725 5.66099 5.68616 6.06777 6.35637 7.01471 7.17760 7.83586 8.25177 9.09107 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017926 B = 0.009545 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.606428 B = 2932.753081 C = 3793.908293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.146 4.146 4 C 0.093 3.907 5 H 0.083 0.917 6 O -0.562 6.562 7 C 0.113 3.887 8 N -0.598 5.598 9 C -0.215 4.215 10 H 0.036 0.964 11 C -0.008 4.008 12 N -0.928 5.928 13 Si 0.892 3.108 14 H -0.309 1.309 15 H -0.304 1.304 16 H -0.243 1.243 17 C 0.163 3.837 18 C -0.138 4.138 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.128 4.128 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.368 0.632 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.257 0.743 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.960 -3.500 12.008 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.184 4.184 4 C 0.032 3.968 5 H 0.101 0.899 6 O -0.366 6.366 7 C -0.012 4.012 8 N -0.318 5.318 9 C -0.345 4.345 10 H 0.053 0.947 11 C -0.204 4.204 12 N -0.572 5.572 13 Si 0.721 3.279 14 H -0.238 1.238 15 H -0.231 1.231 16 H -0.166 1.166 17 C 0.057 3.943 18 C -0.177 4.177 19 C -0.148 4.148 20 C -0.154 4.154 21 C -0.167 4.167 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.214 0.786 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.725 -3.896 12.281 14.099 hybrid contribution -0.420 1.489 -1.066 1.879 sum -6.145 -2.406 11.215 13.013 Atomic orbital electron populations 1.21757 0.94760 1.02005 1.01927 1.21397 0.96361 0.95866 1.01719 1.22277 0.95437 0.98084 1.02615 1.22547 0.92086 0.95025 0.87147 0.89928 1.86479 1.78246 1.56111 1.15769 1.22012 0.84212 0.95528 0.99490 1.44212 1.00541 1.83568 1.03519 1.18206 1.05541 1.19137 0.91639 0.94677 1.25709 0.99768 1.00367 0.94596 1.70210 1.49469 1.37073 1.00411 0.86652 0.77824 0.84288 0.79168 1.23768 1.23109 1.16649 1.21304 0.92869 0.93155 0.87004 1.22819 0.96965 0.98520 0.99432 1.22386 0.96658 0.96416 0.99349 1.22232 0.96504 0.97656 0.99004 1.22450 0.95598 0.98254 1.00377 0.92052 0.92024 0.93080 0.93097 0.92040 0.90056 0.92528 0.78552 0.92124 0.94405 0.93438 0.90820 0.93916 0.91832 0.89714 0.91819 0.90519 0.94415 0.91425 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.91 71.98 0.71 -2.27 16 2 C -0.12 -2.92 5.83 30.59 0.18 -2.74 16 3 C -0.15 -4.09 4.89 30.59 0.15 -3.94 16 4 C 0.09 3.31 3.24 30.59 0.10 3.41 16 5 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 6 O -0.56 -23.99 12.32 -148.98 -1.83 -25.83 16 7 C 0.11 4.51 3.62 86.38 0.31 4.82 16 8 N -0.60 -26.64 1.98 -674.03 -1.33 -27.97 16 9 C -0.22 -11.65 7.66 84.03 0.64 -11.01 16 10 H 0.04 2.18 7.09 -2.91 -0.02 2.16 16 11 C -0.01 -0.44 5.01 84.86 0.42 -0.02 16 12 N -0.93 -56.16 13.97 21.65 0.30 -55.86 16 13 Si 0.89 43.91 26.31 68.60 1.81 45.71 16 14 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 15 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 16 H -0.24 -10.92 5.82 99.48 0.58 -10.34 16 17 C 0.16 6.10 3.42 45.72 0.16 6.25 16 18 C -0.14 -4.91 6.43 31.70 0.20 -4.70 16 19 C -0.11 -3.19 6.91 31.91 0.22 -2.97 16 20 C -0.12 -3.74 6.83 31.67 0.22 -3.52 16 21 C -0.13 -4.63 6.12 31.32 0.19 -4.44 16 22 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.05 1.45 7.82 -2.39 -0.02 1.43 16 26 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 29 H 0.37 15.86 9.05 -74.05 -0.67 15.19 16 30 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 31 H 0.04 1.65 4.32 -2.39 -0.01 1.64 16 32 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 33 H 0.07 2.41 7.90 -2.39 -0.02 2.39 16 34 H 0.04 1.84 7.22 -2.39 -0.02 1.83 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.04 1.73 6.74 -2.39 -0.02 1.71 16 Total: -1.00 -62.66 316.82 2.63 -60.03 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.18 Total: 25.05 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 3.51 Total: -21.12 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -1.03 Total: -83.83 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -1.83 Total: -25.83 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.81 Total: 45.71 kcal Total: -62.66 2.63 -60.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450428855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.632 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds