Wall clock time and date at job start Sun Mar 29 2020 22:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 C 1.53003 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46781 * 304.99966 * 4 3 2 6 6 O 1.42904 * 109.47251 * 64.99838 * 4 3 2 7 7 C 1.52998 * 109.46908 * 184.99976 * 4 3 2 8 8 N 1.46900 * 109.46991 * 174.01201 * 7 4 3 9 9 C 1.46898 * 111.00001 * 201.29933 * 8 7 4 10 10 C 1.50706 * 109.47373 * 164.12879 * 9 8 7 11 11 H 1.08003 * 119.99336 * 3.16698 * 10 9 8 12 12 C 1.37873 * 120.00192 * 183.16308 * 10 9 8 13 13 N 1.31519 * 119.99967 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00138 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47266 * 60.00092 * 14 12 10 16 16 H 1.48499 * 109.47516 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47176 * 300.00152 * 14 12 10 18 18 C 1.46897 * 111.00395 * 77.34622 * 8 7 4 19 19 C 1.53001 * 109.47100 * 57.74811 * 18 8 7 20 20 C 1.53001 * 117.49875 * 242.80972 * 19 18 8 21 21 C 1.53000 * 117.49779 * 174.14984 * 19 18 8 22 22 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46689 * 300.00220 * 1 2 3 24 24 H 1.08996 * 109.47302 * 60.00109 * 1 2 3 25 25 H 1.09000 * 109.47172 * 239.99698 * 2 1 3 26 26 H 1.09003 * 109.47055 * 120.00163 * 2 1 3 27 27 H 1.09000 * 109.47209 * 59.99720 * 3 2 1 28 28 H 1.09003 * 109.47007 * 299.99567 * 3 2 1 29 29 H 0.96700 * 113.99682 * 54.36147 * 6 4 3 30 30 H 1.09000 * 109.47242 * 294.00779 * 7 4 3 31 31 H 1.08997 * 109.47399 * 54.01033 * 7 4 3 32 32 H 1.09004 * 109.47350 * 284.13338 * 9 8 7 33 33 H 1.09004 * 109.47235 * 44.13211 * 9 8 7 34 34 H 0.96997 * 119.99716 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47347 * 177.75165 * 18 8 7 36 36 H 1.09005 * 109.46754 * 297.75133 * 18 8 7 37 37 H 1.09001 * 115.55066 * 28.47830 * 19 18 8 38 38 H 1.09002 * 117.49954 * 0.02562 * 20 19 18 39 39 H 1.08993 * 117.50152 * 145.02056 * 20 19 18 40 40 H 1.08995 * 117.49781 * 214.97579 * 21 19 18 41 41 H 1.08999 * 117.49887 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0801 2.8794 0.1251 8 7 5.5420 2.8692 0.2686 9 6 6.0194 4.1156 0.8823 10 6 7.4333 3.9268 1.3685 11 1 7.9457 2.9931 1.1894 12 6 8.0728 4.9461 2.0416 13 7 7.4486 6.0829 2.2600 14 14 9.8256 4.7123 2.6435 15 1 10.7135 4.4345 1.4861 16 1 10.2812 5.9464 3.3325 17 1 9.8754 3.5699 3.5911 18 6 6.1965 2.6354 -1.0255 19 6 5.7631 3.7155 -2.0188 20 6 4.9896 3.2649 -3.2595 21 6 6.4427 3.7284 -3.3895 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9563 -0.8901 29 1 3.6914 1.2947 -2.0168 30 1 3.8066 3.4414 -0.7679 31 1 3.6322 3.3486 1.0010 32 1 5.9928 4.9174 0.1444 33 1 5.3774 4.3752 1.7242 34 1 7.8986 6.8001 2.7333 35 1 7.2784 2.6725 -0.8976 36 1 5.9091 1.6553 -1.4062 37 1 5.4956 4.6771 -1.5806 38 1 4.7891 2.1990 -3.3680 39 1 4.2134 3.9300 -3.6379 40 1 6.6218 4.6983 -3.8533 41 1 7.1982 2.9672 -3.5839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450462888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:18 Heat of formation + Delta-G solvation = -41.462671 kcal Electronic energy + Delta-G solvation = -18217.224727 eV Core-core repulsion = 15518.319945 eV Total energy + Delta-G solvation = -2698.904782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.79417 -36.91887 -34.86290 -33.98899 -32.39954 -29.82238 -27.23368 -26.40770 -24.07876 -22.22576 -21.76538 -21.28882 -20.93639 -19.11959 -16.29141 -16.07983 -15.87976 -15.35405 -14.87874 -14.45389 -14.16696 -13.91735 -13.36111 -13.34942 -13.05817 -12.19744 -11.96376 -11.78975 -11.64935 -11.32275 -11.25366 -11.17631 -10.92853 -10.78512 -10.72675 -10.63058 -10.52624 -10.41113 -10.03092 -10.02161 -9.45209 -9.28945 -8.86975 -8.37309 -7.09360 -5.97251 -3.97366 3.37263 3.40668 3.44300 4.20964 4.44523 4.59044 4.82042 5.03296 5.07039 5.17032 5.21493 5.35930 5.40065 5.46535 5.48232 5.60889 5.72076 5.78688 5.86325 5.88005 5.96160 6.04340 6.07632 6.14407 6.26019 6.29869 6.33673 6.40218 6.46144 6.60226 6.64265 7.04373 7.34780 7.42647 7.87562 7.95020 8.17934 8.32175 8.63198 9.09984 9.66175 11.13488 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.006148 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.123270 B = 4553.175083 C = 5323.568506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.152 4.152 4 C 0.113 3.887 5 H 0.102 0.898 6 O -0.554 6.554 7 C 0.022 3.978 8 N -0.525 5.525 9 C 0.188 3.812 10 C -0.500 4.500 11 H 0.061 0.939 12 C 0.054 3.946 13 N -0.902 5.902 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.277 1.277 18 C 0.085 3.915 19 C -0.168 4.168 20 C -0.192 4.192 21 C -0.179 4.179 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.361 0.639 30 H 0.034 0.966 31 H 0.069 0.931 32 H -0.006 1.006 33 H 0.026 0.974 34 H 0.260 0.740 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 -7.934 -8.171 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.190 4.190 4 C 0.054 3.946 5 H 0.120 0.880 6 O -0.360 6.360 7 C -0.107 4.107 8 N -0.247 5.247 9 C 0.063 3.937 10 C -0.539 4.539 11 H 0.080 0.920 12 C -0.146 4.146 13 N -0.542 5.542 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.043 4.043 19 C -0.188 4.188 20 C -0.229 4.229 21 C -0.217 4.217 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.208 0.792 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.012 0.988 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.108 -8.525 -7.318 15.113 hybrid contribution 0.374 1.331 -0.499 1.470 sum -9.734 -7.194 -7.818 14.409 Atomic orbital electron populations 1.21793 0.96385 1.01244 1.01548 1.21452 0.95052 0.96760 1.02486 1.22331 0.96950 0.97220 1.02491 1.22046 0.90628 0.94523 0.87378 0.88019 1.86599 1.72079 1.62009 1.15294 1.22764 0.91698 0.95789 1.00456 1.62261 1.02071 1.39187 1.21136 1.19820 0.95954 0.84590 0.93347 1.21125 0.97920 0.99761 1.35076 0.92049 1.24966 0.98176 0.95199 0.96296 1.69949 1.37375 1.04532 1.42337 0.86587 0.84734 0.77267 0.78969 1.20321 1.21465 1.20218 1.21981 0.99755 0.95940 0.86666 1.23198 1.03001 1.02584 0.90022 1.23034 0.94689 1.00839 1.04314 1.22812 0.95114 1.02191 1.01563 0.93042 0.92912 0.93031 0.91579 0.92031 0.91140 0.92101 0.79152 0.94825 0.91270 0.98810 0.95551 0.93017 0.90605 0.89755 0.88018 0.89029 0.89974 0.89669 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.12 -1.27 5.83 -26.73 -0.16 -1.42 16 3 C -0.15 -1.75 4.85 -26.73 -0.13 -1.88 16 4 C 0.11 1.65 3.20 -26.73 -0.09 1.56 16 5 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 6 O -0.55 -7.91 10.13 -35.23 -0.36 -8.26 16 7 C 0.02 0.38 4.69 -3.82 -0.02 0.37 16 8 N -0.52 -11.20 4.58 -236.07 -1.08 -12.28 16 9 C 0.19 4.88 4.60 -4.97 -0.02 4.85 16 10 C -0.50 -14.19 8.56 -34.44 -0.29 -14.48 16 11 H 0.06 1.74 7.43 -52.48 -0.39 1.35 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 14 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C 0.09 1.66 5.21 -3.83 -0.02 1.64 16 19 C -0.17 -2.94 3.85 -90.62 -0.35 -3.29 16 20 C -0.19 -2.61 9.62 -26.69 -0.26 -2.86 16 21 C -0.18 -2.69 10.25 -26.69 -0.27 -2.97 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.36 4.25 7.10 45.56 0.32 4.57 16 30 H 0.03 0.56 6.32 -51.93 -0.33 0.24 16 31 H 0.07 1.24 7.62 -51.93 -0.40 0.85 16 32 H -0.01 -0.16 6.08 -51.93 -0.32 -0.47 16 33 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.08 1.67 7.09 -51.93 -0.37 1.30 16 36 H 0.08 1.53 5.37 -51.93 -0.28 1.25 16 37 H 0.10 2.05 6.34 -51.93 -0.33 1.72 16 38 H 0.09 1.12 6.58 -51.93 -0.34 0.78 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 320.03 15.07 4.82 4.82 Total: -1.00 -29.71 320.03 -8.82 -38.54 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.59 Total: 4.53 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -1.34 Total: -18.04 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: -0.34 Total: -38.55 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.36 Total: -8.26 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.71 -8.82 -38.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450462888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.927 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds