Wall clock time and date at job start Sun Mar 29 2020 22:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47390 * 2 1 4 4 C 1.53003 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.46781 * 304.99966 * 4 3 2 6 6 O 1.42904 * 109.47251 * 64.99838 * 4 3 2 7 7 C 1.52998 * 109.46908 * 184.99976 * 4 3 2 8 8 N 1.46900 * 109.46991 * 174.01201 * 7 4 3 9 9 C 1.46898 * 111.00001 * 201.29933 * 8 7 4 10 10 C 1.50706 * 109.47373 * 164.12879 * 9 8 7 11 11 H 1.08003 * 119.99336 * 3.16698 * 10 9 8 12 12 C 1.37873 * 120.00192 * 183.16308 * 10 9 8 13 13 N 1.31519 * 119.99967 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00138 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47266 * 60.00092 * 14 12 10 16 16 H 1.48499 * 109.47516 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47176 * 300.00152 * 14 12 10 18 18 C 1.46897 * 111.00395 * 77.34622 * 8 7 4 19 19 C 1.53001 * 109.47100 * 57.74811 * 18 8 7 20 20 C 1.53001 * 117.49875 * 242.80972 * 19 18 8 21 21 C 1.53000 * 117.49779 * 174.14984 * 19 18 8 22 22 H 1.09003 * 109.47342 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46689 * 300.00220 * 1 2 3 24 24 H 1.08996 * 109.47302 * 60.00109 * 1 2 3 25 25 H 1.09000 * 109.47172 * 239.99698 * 2 1 3 26 26 H 1.09003 * 109.47055 * 120.00163 * 2 1 3 27 27 H 1.09000 * 109.47209 * 59.99720 * 3 2 1 28 28 H 1.09003 * 109.47007 * 299.99567 * 3 2 1 29 29 H 0.96700 * 113.99682 * 54.36147 * 6 4 3 30 30 H 1.09000 * 109.47242 * 294.00779 * 7 4 3 31 31 H 1.08997 * 109.47399 * 54.01033 * 7 4 3 32 32 H 1.09004 * 109.47350 * 284.13338 * 9 8 7 33 33 H 1.09004 * 109.47235 * 44.13211 * 9 8 7 34 34 H 0.96997 * 119.99716 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.47347 * 177.75165 * 18 8 7 36 36 H 1.09005 * 109.46754 * 297.75133 * 18 8 7 37 37 H 1.09001 * 115.55066 * 28.47830 * 19 18 8 38 38 H 1.09002 * 117.49954 * 0.02562 * 20 19 18 39 39 H 1.08993 * 117.50152 * 145.02056 * 20 19 18 40 40 H 1.08995 * 117.49781 * 214.97579 * 21 19 18 41 41 H 1.08999 * 117.49887 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9337 0.8528 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0801 2.8794 0.1251 8 7 5.5420 2.8692 0.2686 9 6 6.0194 4.1156 0.8823 10 6 7.4333 3.9268 1.3685 11 1 7.9457 2.9931 1.1894 12 6 8.0728 4.9461 2.0416 13 7 7.4486 6.0829 2.2600 14 14 9.8256 4.7123 2.6435 15 1 10.7135 4.4345 1.4861 16 1 10.2812 5.9464 3.3325 17 1 9.8754 3.5699 3.5911 18 6 6.1965 2.6354 -1.0255 19 6 5.7631 3.7155 -2.0188 20 6 4.9896 3.2649 -3.2595 21 6 6.4427 3.7284 -3.3895 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6768 1.9563 -0.8901 29 1 3.6914 1.2947 -2.0168 30 1 3.8066 3.4414 -0.7679 31 1 3.6322 3.3486 1.0010 32 1 5.9928 4.9174 0.1444 33 1 5.3774 4.3752 1.7242 34 1 7.8986 6.8001 2.7333 35 1 7.2784 2.6725 -0.8976 36 1 5.9091 1.6553 -1.4062 37 1 5.4956 4.6771 -1.5806 38 1 4.7891 2.1990 -3.3680 39 1 4.2134 3.9300 -3.6379 40 1 6.6218 4.6983 -3.8533 41 1 7.1982 2.9672 -3.5839 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450462888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:17 Heat of formation + Delta-G solvation = -61.024230 kcal Electronic energy + Delta-G solvation = -18218.072980 eV Core-core repulsion = 15518.319945 eV Total energy + Delta-G solvation = -2699.753035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18446 -38.13138 -36.44004 -34.93160 -34.49621 -31.08213 -29.16673 -27.68309 -25.75779 -23.54211 -23.24952 -22.53892 -21.96056 -20.66278 -18.37059 -17.35237 -17.18326 -16.74845 -16.53349 -15.80600 -15.66049 -15.22812 -14.67623 -14.53361 -14.20402 -14.09235 -13.49727 -13.04560 -12.86452 -12.72061 -12.67225 -12.60453 -12.41845 -12.34630 -12.20014 -12.00287 -11.88739 -11.65018 -11.52573 -11.46730 -11.11528 -10.78639 -10.58286 -10.32053 -8.82012 -8.18245 -6.27448 1.39376 1.42689 1.50481 2.40702 2.95427 3.13017 3.29527 3.62129 3.89675 3.97968 4.12166 4.14535 4.19328 4.23297 4.39274 4.51101 4.61743 4.69326 4.76785 4.77418 4.84224 4.90993 4.97674 5.04068 5.07477 5.09652 5.21443 5.26848 5.29793 5.30506 5.33235 5.46908 5.52821 5.54338 5.69159 6.11580 6.47117 6.73038 6.88827 6.93876 7.41510 8.91841 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.006148 C = 0.005258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.123270 B = 4553.175083 C = 5323.568506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.142 4.142 4 C 0.127 3.873 5 H 0.083 0.917 6 O -0.560 6.560 7 C 0.024 3.976 8 N -0.536 5.536 9 C 0.206 3.794 10 C -0.518 4.518 11 H 0.056 0.944 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.095 3.905 19 C -0.199 4.199 20 C -0.154 4.154 21 C -0.178 4.178 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.375 0.625 30 H 0.044 0.956 31 H 0.056 0.944 32 H -0.029 1.029 33 H -0.004 1.004 34 H 0.263 0.737 35 H 0.041 0.959 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 -9.226 -9.607 17.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.180 4.180 4 C 0.067 3.933 5 H 0.101 0.899 6 O -0.367 6.367 7 C -0.105 4.105 8 N -0.258 5.258 9 C 0.079 3.921 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.196 4.196 13 N -0.577 5.577 14 Si 0.790 3.210 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.033 4.033 19 C -0.219 4.219 20 C -0.190 4.190 21 C -0.215 4.215 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.224 0.776 30 H 0.062 0.938 31 H 0.074 0.926 32 H -0.012 1.012 33 H 0.014 0.986 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.703 -9.832 -8.778 16.979 hybrid contribution 0.521 1.732 -0.096 1.812 sum -10.182 -8.100 -8.874 15.748 Atomic orbital electron populations 1.21765 0.94989 1.01990 1.01954 1.21416 0.96218 0.95657 1.02153 1.22235 0.94227 0.98333 1.03249 1.21795 0.92598 0.91709 0.87191 0.89884 1.86564 1.72491 1.61988 1.15685 1.22860 0.89100 0.98245 1.00307 1.62189 1.04633 1.36327 1.22692 1.19430 0.94690 0.86048 0.91907 1.21430 0.99160 0.99666 1.35385 0.92592 1.25858 1.02641 0.94760 0.96304 1.70075 1.39236 1.05353 1.42992 0.85497 0.79323 0.77522 0.78647 1.19418 1.20711 1.19433 1.21852 0.97572 0.97554 0.86355 1.22852 1.07282 1.00687 0.91053 1.23132 0.94092 1.02456 0.99360 1.22926 0.96686 1.02967 0.98959 0.92182 0.92876 0.92273 0.91563 0.92772 0.91208 0.90553 0.77559 0.93818 0.92572 1.01169 0.98567 0.92815 0.94041 0.87886 0.91431 0.86776 0.88170 0.89146 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.91 71.98 0.71 -1.62 16 2 C -0.12 -2.22 5.83 30.59 0.18 -2.04 16 3 C -0.14 -3.02 4.85 30.59 0.15 -2.87 16 4 C 0.13 3.55 3.20 30.59 0.10 3.65 16 5 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 6 O -0.56 -14.68 10.13 -148.98 -1.51 -16.19 16 7 C 0.02 0.83 4.69 86.30 0.41 1.23 16 8 N -0.54 -23.65 4.58 -900.78 -4.12 -27.78 16 9 C 0.21 11.24 4.60 85.56 0.39 11.63 16 10 C -0.52 -30.44 8.56 25.60 0.22 -30.22 16 11 H 0.06 3.27 7.43 -2.91 -0.02 3.25 16 12 C 0.00 0.11 5.46 84.65 0.46 0.57 16 13 N -0.94 -57.58 13.29 21.45 0.28 -57.30 16 14 Si 0.97 45.66 29.54 68.60 2.03 47.68 16 15 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 18 C 0.09 3.73 5.21 86.30 0.45 4.18 16 19 C -0.20 -6.91 3.85 -10.79 -0.04 -6.96 16 20 C -0.15 -3.72 9.62 30.62 0.29 -3.42 16 21 C -0.18 -5.06 10.25 30.62 0.31 -4.74 16 22 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.27 7.82 -2.39 -0.02 1.25 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.38 7.48 7.10 -74.06 -0.53 6.95 16 30 H 0.04 1.45 6.32 -2.39 -0.02 1.43 16 31 H 0.06 2.09 7.62 -2.39 -0.02 2.08 16 32 H -0.03 -1.71 6.08 -2.38 -0.01 -1.72 16 33 H 0.00 -0.23 7.67 -2.39 -0.02 -0.24 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.04 1.88 7.09 -2.39 -0.02 1.86 16 36 H 0.10 3.62 5.37 -2.38 -0.01 3.61 16 37 H 0.07 2.83 6.34 -2.39 -0.02 2.82 16 38 H 0.11 2.28 6.58 -2.39 -0.02 2.26 16 39 H 0.10 2.12 8.14 -2.39 -0.02 2.11 16 40 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -66.13 320.03 0.78 -65.35 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.46 Total: 18.84 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.63 Total: -30.61 kcal Atomic # 7 Polarization: -81.23 SS G_CDS: -3.84 Total: -85.07 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -1.51 Total: -16.19 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -66.13 0.78 -65.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450462888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.326 kcal (2) G-P(sol) polarization free energy of solvation -66.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds