Wall clock time and date at job start Sun Mar 29 2020 22:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53002 * 109.46836 * 119.99805 * 2 1 3 5 5 H 1.08996 * 109.47164 * 296.35254 * 4 2 1 6 6 N 1.46501 * 109.47118 * 56.35726 * 4 2 1 7 7 C 1.36934 * 119.99652 * 274.99352 * 6 4 2 8 8 H 1.07999 * 120.00405 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99911 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99997 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47015 * 90.00201 * 11 9 7 13 13 H 1.48492 * 109.47558 * 210.00438 * 11 9 7 14 14 H 1.48502 * 109.47180 * 330.00587 * 11 9 7 15 15 C 1.53004 * 109.46804 * 176.35275 * 4 2 1 16 16 C 1.52999 * 110.01892 * 316.37166 * 15 4 2 17 17 O 1.42895 * 109.47045 * 180.02562 * 16 15 4 18 18 C 1.54263 * 110.03216 * 77.76401 * 15 4 2 19 19 C 1.54973 * 104.16036 * 95.75225 * 18 15 4 20 20 C 1.54888 * 102.77647 * 37.88798 * 19 18 15 21 21 C 1.53875 * 110.03083 * 194.97995 * 15 4 2 22 22 H 1.08999 * 109.46722 * 300.00165 * 1 2 3 23 23 H 1.08996 * 109.46451 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47401 * 239.99592 * 2 1 3 26 26 H 1.09001 * 109.46994 * 192.39588 * 3 2 1 27 27 H 1.09001 * 109.46966 * 312.38910 * 3 2 1 28 28 H 1.08992 * 109.47450 * 72.39547 * 3 2 1 29 29 H 0.96995 * 120.00520 * 95.00187 * 6 4 2 30 30 H 0.96995 * 119.99805 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.47296 * 299.99970 * 16 15 4 32 32 H 1.08999 * 109.47160 * 60.00204 * 16 15 4 33 33 H 0.96703 * 114.00032 * 179.97438 * 17 16 15 34 34 H 1.09001 * 110.48973 * 214.39972 * 18 15 4 35 35 H 1.09002 * 110.48787 * 337.04526 * 18 15 4 36 36 H 1.08995 * 110.72020 * 279.57487 * 19 18 15 37 37 H 1.09001 * 110.76563 * 156.22217 * 19 18 15 38 38 H 1.09000 * 110.48742 * 203.40705 * 20 19 18 39 39 H 1.09000 * 110.48548 * 80.76067 * 20 19 18 40 40 H 1.09004 * 110.03331 * 359.95470 * 21 15 4 41 41 H 1.09001 * 110.03313 * 121.33328 * 21 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7310 -0.1710 2.1380 6 7 1.4813 -2.0748 1.2940 7 6 0.2425 -2.2864 1.8377 8 1 -0.3229 -1.4556 2.2332 9 6 -0.2872 -3.5689 1.8796 10 7 0.4015 -4.5815 1.3972 11 14 -1.9774 -3.8576 2.6207 12 1 -3.0103 -3.7335 1.5610 13 1 -2.0337 -5.2195 3.2098 14 1 -2.2321 -2.8490 3.6805 15 6 3.5673 -0.8012 1.2043 16 6 4.0299 -1.1953 -0.1998 17 8 5.4568 -1.2671 -0.2285 18 6 4.1795 0.5583 1.6002 19 6 4.4881 0.4093 3.1116 20 6 4.9741 -1.0574 3.2190 21 6 4.0719 -1.8281 2.2331 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1075 1.4504 -0.2206 27 1 1.5080 2.0159 -0.7590 28 1 1.8682 1.8886 0.9794 29 1 1.9888 -2.8210 0.9386 30 1 0.0315 -5.4776 1.4269 31 1 3.6123 -2.1678 -0.4604 32 1 3.6888 -0.4493 -0.9176 33 1 5.8210 -1.5129 -1.0900 34 1 5.0964 0.7414 1.0400 35 1 3.4627 1.3624 1.4339 36 1 3.5874 0.5623 3.7060 37 1 5.2747 1.1001 3.4153 38 1 4.8372 -1.4314 4.2336 39 1 6.0195 -1.1357 2.9203 40 1 3.2287 -2.2689 2.7651 41 1 4.6456 -2.6077 1.7321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459518001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:23 Heat of formation + Delta-G solvation = -51.718285 kcal Electronic energy + Delta-G solvation = -19336.621829 eV Core-core repulsion = 16637.272330 eV Total energy + Delta-G solvation = -2699.349499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.63096 -35.89467 -35.19650 -33.16513 -30.75108 -29.45329 -28.09681 -26.11372 -25.12527 -24.11016 -22.46329 -20.20013 -19.38576 -18.07004 -17.28388 -16.73228 -15.32039 -14.88047 -14.73791 -14.04688 -13.81452 -13.48813 -13.15858 -13.00009 -12.42253 -12.38121 -11.99147 -11.80028 -11.39842 -11.22461 -11.01588 -10.84326 -10.55665 -10.48672 -10.44194 -10.28165 -10.10719 -10.00398 -9.91213 -9.74906 -9.53295 -9.36668 -9.24149 -8.75294 -6.88631 -5.73672 -3.00334 3.44061 3.50277 3.51208 4.60916 4.61261 5.04568 5.21362 5.25888 5.46189 5.59599 5.69005 5.70970 5.75794 5.83238 5.90443 5.97941 6.08603 6.15622 6.17294 6.22909 6.29702 6.30311 6.40021 6.45456 6.50674 6.55985 6.61156 6.64562 6.75278 6.83438 6.96176 6.99451 7.18172 7.19212 7.38580 7.74789 7.96708 8.45097 9.56403 10.14825 10.50076 11.48875 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.008567 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.063801 B = 3267.721020 C = 3629.892784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C -0.151 4.151 4 C 0.196 3.804 5 H 0.051 0.949 6 N -0.719 5.719 7 C -0.228 4.228 8 H 0.071 0.929 9 C -0.015 4.015 10 N -0.932 5.932 11 Si 0.900 3.100 12 H -0.291 1.291 13 H -0.293 1.293 14 H -0.283 1.283 15 C -0.058 4.058 16 C 0.084 3.916 17 O -0.573 6.573 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.109 4.109 22 H 0.040 0.960 23 H 0.027 0.973 24 H 0.087 0.913 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.053 0.947 29 H 0.384 0.616 30 H 0.254 0.746 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.369 0.631 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 9.674 -2.308 12.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.139 4.139 3 C -0.209 4.209 4 C 0.085 3.915 5 H 0.069 0.931 6 N -0.359 5.359 7 C -0.359 4.359 8 H 0.089 0.911 9 C -0.210 4.210 10 N -0.581 5.581 11 Si 0.732 3.268 12 H -0.219 1.219 13 H -0.219 1.219 14 H -0.209 1.209 15 C -0.059 4.059 16 C 0.007 3.993 17 O -0.377 6.377 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.147 4.147 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.218 0.782 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.214 0.786 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.440 9.820 -1.567 12.419 hybrid contribution -0.816 -0.691 -0.424 1.150 sum 6.624 9.128 -1.991 11.453 Atomic orbital electron populations 1.21846 0.95234 1.03870 0.98714 1.21904 0.96718 0.94483 1.00766 1.22199 1.00495 0.97520 1.00641 1.20311 0.88461 0.87879 0.94822 0.93098 1.42481 1.18772 1.02640 1.72058 1.19210 0.93360 0.92656 1.30718 0.91108 1.24692 0.98420 0.95804 1.02118 1.69652 1.37710 0.98944 1.51816 0.86284 0.84658 0.77090 0.78772 1.21899 1.21948 1.20858 1.21421 0.95998 0.95250 0.93249 1.22421 0.79799 0.99598 0.97517 1.86477 1.21515 1.92967 1.36720 1.22876 1.00750 0.97299 0.95565 1.22473 1.00066 0.96561 0.96926 1.22288 0.99127 0.95337 0.98888 1.22181 0.99401 0.97055 0.96064 0.94117 0.95386 0.89469 0.92088 0.92490 0.94044 0.92856 0.78223 0.93652 0.93415 0.93609 0.78626 0.91529 0.90184 0.91898 0.92740 0.92743 0.92527 0.89558 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.10 37.16 0.30 -2.31 16 2 C -0.12 -2.05 2.15 -90.62 -0.19 -2.24 16 3 C -0.15 -2.17 7.36 37.16 0.27 -1.89 16 4 C 0.20 3.76 1.51 -67.93 -0.10 3.66 16 5 H 0.05 1.05 7.95 -51.93 -0.41 0.63 16 6 N -0.72 -16.96 3.65 -53.42 -0.20 -17.16 16 7 C -0.23 -5.99 7.48 -15.06 -0.11 -6.11 16 8 H 0.07 1.83 7.41 -52.49 -0.39 1.45 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 11 Si 0.90 22.13 29.55 -169.99 -5.02 17.11 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 C -0.06 -0.99 0.23 -153.39 -0.04 -1.03 16 16 C 0.08 1.34 4.78 37.16 0.18 1.52 16 17 O -0.57 -8.37 12.11 -35.23 -0.43 -8.79 16 18 C -0.13 -1.91 4.49 -25.03 -0.11 -2.03 16 19 C -0.12 -1.81 6.91 -24.69 -0.17 -1.98 16 20 C -0.12 -1.89 6.83 -25.07 -0.17 -2.06 16 21 C -0.11 -2.02 5.24 -25.61 -0.13 -2.15 16 22 H 0.04 0.74 8.12 -51.93 -0.42 0.32 16 23 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.09 1.93 6.02 -51.93 -0.31 1.61 16 25 H 0.06 1.09 6.13 -51.93 -0.32 0.77 16 26 H 0.06 0.77 5.28 -51.93 -0.27 0.49 16 27 H 0.04 0.55 8.09 -51.93 -0.42 0.13 16 28 H 0.05 0.75 7.11 -51.93 -0.37 0.38 16 29 H 0.38 9.79 6.79 -40.82 -0.28 9.51 16 30 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 0.85 7.57 -51.93 -0.39 0.45 16 32 H 0.05 0.68 5.41 -51.93 -0.28 0.40 16 33 H 0.37 3.72 9.12 45.56 0.42 4.14 16 34 H 0.07 1.00 7.18 -51.93 -0.37 0.63 16 35 H 0.08 1.14 4.03 -51.93 -0.21 0.93 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.86 6.78 -51.93 -0.35 1.51 16 41 H 0.06 1.10 7.37 -51.93 -0.38 0.71 16 LS Contribution 299.64 15.07 4.52 4.52 Total: -1.00 -28.73 299.64 -6.80 -35.53 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.02 Total: 12.66 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.38 Total: -17.12 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: 0.53 Total: -43.90 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.43 Total: -8.79 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.73 -6.80 -35.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459518001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.186 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds