Wall clock time and date at job start Sun Mar 29 2020 22:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 C 1.53002 * 109.46836 * 119.99805 * 2 1 3 5 5 H 1.08996 * 109.47164 * 296.35254 * 4 2 1 6 6 N 1.46501 * 109.47118 * 56.35726 * 4 2 1 7 7 C 1.36934 * 119.99652 * 274.99352 * 6 4 2 8 8 H 1.07999 * 120.00405 * 0.02562 * 7 6 4 9 9 C 1.38817 * 119.99911 * 179.97438 * 7 6 4 10 10 N 1.31617 * 120.00138 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99997 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47015 * 90.00201 * 11 9 7 13 13 H 1.48492 * 109.47558 * 210.00438 * 11 9 7 14 14 H 1.48502 * 109.47180 * 330.00587 * 11 9 7 15 15 C 1.53004 * 109.46804 * 176.35275 * 4 2 1 16 16 C 1.52999 * 110.01892 * 316.37166 * 15 4 2 17 17 O 1.42895 * 109.47045 * 180.02562 * 16 15 4 18 18 C 1.54263 * 110.03216 * 77.76401 * 15 4 2 19 19 C 1.54973 * 104.16036 * 95.75225 * 18 15 4 20 20 C 1.54888 * 102.77647 * 37.88798 * 19 18 15 21 21 C 1.53875 * 110.03083 * 194.97995 * 15 4 2 22 22 H 1.08999 * 109.46722 * 300.00165 * 1 2 3 23 23 H 1.08996 * 109.46451 * 59.99943 * 1 2 3 24 24 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47401 * 239.99592 * 2 1 3 26 26 H 1.09001 * 109.46994 * 192.39588 * 3 2 1 27 27 H 1.09001 * 109.46966 * 312.38910 * 3 2 1 28 28 H 1.08992 * 109.47450 * 72.39547 * 3 2 1 29 29 H 0.96995 * 120.00520 * 95.00187 * 6 4 2 30 30 H 0.96995 * 119.99805 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.47296 * 299.99970 * 16 15 4 32 32 H 1.08999 * 109.47160 * 60.00204 * 16 15 4 33 33 H 0.96703 * 114.00032 * 179.97438 * 17 16 15 34 34 H 1.09001 * 110.48973 * 214.39972 * 18 15 4 35 35 H 1.09002 * 110.48787 * 337.04526 * 18 15 4 36 36 H 1.08995 * 110.72020 * 279.57487 * 19 18 15 37 37 H 1.09001 * 110.76563 * 156.22217 * 19 18 15 38 38 H 1.09000 * 110.48742 * 203.40705 * 20 19 18 39 39 H 1.09000 * 110.48548 * 80.76067 * 20 19 18 40 40 H 1.09004 * 110.03331 * 359.95470 * 21 15 4 41 41 H 1.09001 * 110.03313 * 121.33328 * 21 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7310 -0.1710 2.1380 6 7 1.4813 -2.0748 1.2940 7 6 0.2425 -2.2864 1.8377 8 1 -0.3229 -1.4556 2.2332 9 6 -0.2872 -3.5689 1.8796 10 7 0.4015 -4.5815 1.3972 11 14 -1.9774 -3.8576 2.6207 12 1 -3.0103 -3.7335 1.5610 13 1 -2.0337 -5.2195 3.2098 14 1 -2.2321 -2.8490 3.6805 15 6 3.5673 -0.8012 1.2043 16 6 4.0299 -1.1953 -0.1998 17 8 5.4568 -1.2671 -0.2285 18 6 4.1795 0.5583 1.6002 19 6 4.4881 0.4093 3.1116 20 6 4.9741 -1.0574 3.2190 21 6 4.0719 -1.8281 2.2331 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1075 1.4504 -0.2206 27 1 1.5080 2.0159 -0.7590 28 1 1.8682 1.8886 0.9794 29 1 1.9888 -2.8210 0.9386 30 1 0.0315 -5.4776 1.4269 31 1 3.6123 -2.1678 -0.4604 32 1 3.6888 -0.4493 -0.9176 33 1 5.8210 -1.5129 -1.0900 34 1 5.0964 0.7414 1.0400 35 1 3.4627 1.3624 1.4339 36 1 3.5874 0.5623 3.7060 37 1 5.2747 1.1001 3.4153 38 1 4.8372 -1.4314 4.2336 39 1 6.0195 -1.1357 2.9203 40 1 3.2287 -2.2689 2.7651 41 1 4.6456 -2.6077 1.7321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459518001.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:22 Heat of formation + Delta-G solvation = -70.572070 kcal Electronic energy + Delta-G solvation = -19337.439390 eV Core-core repulsion = 16637.272330 eV Total energy + Delta-G solvation = -2700.167060 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.03108 -37.26066 -36.53474 -34.98210 -32.48326 -30.96460 -29.49249 -27.44339 -26.86338 -25.46989 -24.26502 -21.46792 -20.81557 -19.64485 -18.87596 -18.22662 -16.89118 -16.32303 -16.18704 -15.67301 -15.33261 -14.96744 -14.81146 -14.50582 -13.83434 -13.64474 -13.41527 -13.08003 -13.00248 -12.83379 -12.74434 -12.63048 -12.13152 -12.11871 -11.86148 -11.77573 -11.54423 -11.43190 -11.35935 -11.22701 -11.16325 -10.86657 -10.65206 -10.51763 -8.86383 -7.86495 -5.10780 1.47161 1.47426 1.55151 2.59853 3.38762 3.50522 3.69986 3.82977 4.00114 4.15551 4.25997 4.34489 4.45846 4.51855 4.55941 4.61385 4.74923 4.80803 4.85688 4.93417 4.96565 5.04267 5.06089 5.07637 5.19498 5.22636 5.26829 5.29359 5.39089 5.47160 5.57083 5.61142 5.63245 5.69412 5.71094 5.82505 6.35663 6.98942 7.42305 8.19680 8.42914 9.37273 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.008567 C = 0.007712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.063801 B = 3267.721020 C = 3629.892784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.194 3.806 5 H 0.039 0.961 6 N -0.726 5.726 7 C -0.209 4.209 8 H 0.074 0.926 9 C -0.078 4.078 10 N -0.971 5.971 11 Si 0.957 3.043 12 H -0.291 1.291 13 H -0.302 1.302 14 H -0.272 1.272 15 C -0.057 4.057 16 C 0.093 3.907 17 O -0.578 6.578 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.116 4.116 21 C -0.108 4.108 22 H 0.040 0.960 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.371 0.629 30 H 0.246 0.754 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.390 0.610 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.522 12.382 -2.596 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.201 4.201 4 C 0.086 3.914 5 H 0.057 0.943 6 N -0.365 5.365 7 C -0.341 4.341 8 H 0.092 0.908 9 C -0.270 4.270 10 N -0.623 5.623 11 Si 0.788 3.212 12 H -0.219 1.219 13 H -0.229 1.229 14 H -0.197 1.197 15 C -0.058 4.058 16 C 0.016 3.984 17 O -0.385 6.385 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.146 4.146 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.203 0.797 30 H 0.055 0.945 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.274 12.586 -1.863 15.177 hybrid contribution -1.008 -1.491 -0.353 1.834 sum 7.266 11.095 -2.216 13.446 Atomic orbital electron populations 1.21766 0.96214 1.01503 0.99855 1.21782 0.95815 0.96629 0.99167 1.22116 1.01464 0.94813 1.01693 1.20475 0.90055 0.85589 0.95292 0.94262 1.42622 1.17951 1.04255 1.71692 1.19480 0.93871 0.92367 1.28380 0.90841 1.25349 1.01651 0.95971 1.04037 1.69803 1.39221 0.98895 1.54373 0.85357 0.81184 0.76496 0.78143 1.21870 1.22895 1.19732 1.21357 0.94353 0.96405 0.93653 1.22200 0.80664 0.98609 0.96966 1.86416 1.20361 1.92992 1.38778 1.22855 1.01214 0.95867 0.95763 1.22482 1.00644 0.95889 0.96701 1.22272 0.98968 0.96029 0.98077 1.22081 0.98309 0.97463 0.96777 0.94112 0.93089 0.93492 0.92458 0.91035 0.92326 0.92255 0.79660 0.94534 0.96126 0.91906 0.76163 0.90603 0.88817 0.92484 0.90119 0.92726 0.91588 0.93520 0.93914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 8.10 71.98 0.58 -4.33 16 2 C -0.11 -3.74 2.15 -10.79 -0.02 -3.76 16 3 C -0.14 -3.57 7.36 71.98 0.53 -3.04 16 4 C 0.19 7.38 1.51 44.99 0.07 7.45 16 5 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 6 N -0.73 -35.16 3.65 -322.93 -1.18 -36.34 16 7 C -0.21 -11.19 7.48 84.04 0.63 -10.56 16 8 H 0.07 3.83 7.41 -2.91 -0.02 3.81 16 9 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 10 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 11 Si 0.96 46.54 29.55 68.60 2.03 48.57 16 12 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 13 H -0.30 -14.99 7.11 99.48 0.71 -14.29 16 14 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 15 C -0.06 -1.87 0.23 -51.46 -0.01 -1.88 16 16 C 0.09 2.86 4.78 71.98 0.34 3.20 16 17 O -0.58 -15.63 12.11 -148.98 -1.80 -17.44 16 18 C -0.12 -3.22 4.49 31.70 0.14 -3.07 16 19 C -0.12 -3.19 6.91 31.91 0.22 -2.97 16 20 C -0.12 -3.54 6.83 31.67 0.22 -3.32 16 21 C -0.11 -4.04 5.24 31.32 0.16 -3.87 16 22 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 23 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 2.07 6.02 -2.39 -0.01 2.06 16 25 H 0.06 1.95 6.13 -2.39 -0.01 1.94 16 26 H 0.07 1.60 5.28 -2.39 -0.01 1.58 16 27 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.06 1.43 7.11 -2.39 -0.02 1.41 16 29 H 0.37 19.78 6.79 -92.71 -0.63 19.15 16 30 H 0.25 14.79 8.31 -92.71 -0.77 14.01 16 31 H 0.02 0.74 7.57 -2.39 -0.02 0.72 16 32 H 0.06 1.71 5.41 -2.39 -0.01 1.70 16 33 H 0.39 6.92 9.12 -74.06 -0.68 6.25 16 34 H 0.08 1.95 7.18 -2.39 -0.02 1.94 16 35 H 0.09 2.28 4.03 -2.39 -0.01 2.27 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 2.09 6.78 -2.38 -0.02 2.07 16 41 H 0.04 1.67 7.37 -2.39 -0.02 1.65 16 Total: -1.00 -63.08 299.64 2.37 -60.71 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -0.28 Total: 33.76 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 3.33 Total: -30.16 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -0.90 Total: -95.44 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -1.80 Total: -17.44 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -63.08 2.37 -60.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459518001.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.865 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds