Wall clock time and date at job start Sun Mar 29 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47384 * 2 1 4 4 C 1.52998 * 109.47121 * 119.99918 * 2 1 3 5 5 H 1.08996 * 109.47506 * 188.45280 * 4 2 1 6 6 N 1.46502 * 109.47280 * 68.44716 * 4 2 1 7 7 C 1.36947 * 119.99685 * 89.29332 * 6 4 2 8 8 H 1.07998 * 119.99725 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99648 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99332 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00156 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46863 * 90.00681 * 11 9 7 13 13 H 1.48509 * 109.46993 * 210.00233 * 11 9 7 14 14 H 1.48493 * 109.47211 * 330.00167 * 11 9 7 15 15 C 1.53005 * 109.47102 * 308.45234 * 4 2 1 16 16 C 1.52997 * 110.01575 * 188.85515 * 15 4 2 17 17 O 1.42904 * 109.46993 * 181.27534 * 16 15 4 18 18 C 1.54260 * 110.07290 * 310.27452 * 15 4 2 19 19 C 1.54888 * 104.19609 * 95.69682 * 18 15 4 20 20 C 1.54884 * 102.75068 * 37.94094 * 19 18 15 21 21 C 1.53872 * 110.03061 * 67.46543 * 15 4 2 22 22 H 1.08997 * 109.47630 * 298.66366 * 1 2 3 23 23 H 1.09010 * 109.46984 * 58.65924 * 1 2 3 24 24 H 1.08996 * 109.47206 * 178.65987 * 1 2 3 25 25 H 1.08997 * 109.47717 * 239.99877 * 2 1 3 26 26 H 1.09000 * 109.47201 * 166.91720 * 3 2 1 27 27 H 1.08997 * 109.46778 * 286.91869 * 3 2 1 28 28 H 1.08997 * 109.46824 * 46.91767 * 3 2 1 29 29 H 0.97001 * 120.00746 * 269.30226 * 6 4 2 30 30 H 0.97000 * 119.99410 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47556 * 61.27656 * 16 15 4 32 32 H 1.08997 * 109.47343 * 301.27291 * 16 15 4 33 33 H 0.96697 * 113.99941 * 180.02562 * 17 16 15 34 34 H 1.09004 * 110.48668 * 214.37429 * 18 15 4 35 35 H 1.09002 * 110.48710 * 337.01661 * 18 15 4 36 36 H 1.09005 * 110.75435 * 279.62300 * 19 18 15 37 37 H 1.08996 * 110.75754 * 156.26248 * 19 18 15 38 38 H 1.09000 * 110.48971 * 203.37890 * 20 19 18 39 39 H 1.09002 * 110.59663 * 80.79471 * 20 19 18 40 40 H 1.09002 * 110.03931 * 359.95254 * 21 15 4 41 41 H 1.09006 * 110.03529 * 121.33614 * 21 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1194 -0.5923 1.3280 6 7 1.7244 -2.1485 1.1522 7 6 2.6105 -3.0068 0.5575 8 1 3.5421 -2.6314 0.1606 9 6 2.3113 -4.3591 0.4651 10 7 3.1632 -5.1841 -0.1060 11 14 0.7002 -5.0083 1.1524 12 1 -0.3435 -4.9594 0.0972 13 1 0.8837 -6.4117 1.6024 14 1 0.2798 -4.1703 2.3039 15 6 1.3642 -0.1328 2.4895 16 6 2.0203 -0.6867 3.7558 17 8 1.3615 -0.1529 4.9061 18 6 1.4691 1.4061 2.4697 19 6 0.1270 1.8705 1.8516 20 6 -0.8917 0.8740 2.4585 21 6 -0.1368 -0.4712 2.4823 22 1 -0.3634 0.4929 0.9017 23 1 -0.3633 0.5346 -0.8778 24 1 -0.3633 -1.0273 -0.0240 25 1 1.8934 -0.5138 -0.8899 26 1 3.1049 1.4514 0.2326 27 1 1.8792 1.8847 -0.9832 28 1 1.4994 2.0190 0.7506 29 1 0.8877 -2.4857 1.5089 30 1 2.9543 -6.1291 -0.1702 31 1 3.0721 -0.4015 3.7746 32 1 1.9383 -1.7735 3.7619 33 1 1.7262 -0.4615 5.7468 34 1 1.5772 1.7942 3.4825 35 1 2.3058 1.7235 1.8473 36 1 0.1516 1.7842 0.7653 37 1 -0.1046 2.8918 2.1538 38 1 -1.7780 0.8030 1.8279 39 1 -1.1670 1.1750 3.4693 40 1 -0.3842 -1.0538 1.5950 41 1 -0.3978 -1.0307 3.3807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459518002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:25 Heat of formation + Delta-G solvation = 55.709849 kcal Electronic energy + Delta-G solvation = -19775.485661 eV Core-core repulsion = 17080.794596 eV Total energy + Delta-G solvation = -2694.691065 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.41048 -36.32031 -34.80559 -32.82255 -31.61010 -30.38354 -29.20159 -25.57071 -25.07114 -23.99335 -22.49871 -20.63779 -19.64382 -18.26323 -17.69111 -16.75189 -16.19661 -14.86116 -14.62432 -14.42446 -14.20173 -13.66991 -13.44470 -12.88597 -12.56565 -12.47759 -12.26434 -11.73970 -11.60042 -11.04259 -10.92650 -10.82399 -10.79563 -10.61837 -10.49766 -10.31633 -10.14744 -9.87215 -9.82521 -9.63959 -9.57635 -9.42828 -8.97603 -8.76004 -7.21125 -5.75706 -3.09776 3.37011 3.40518 3.45252 4.48470 4.59852 4.76862 4.97055 5.03584 5.38485 5.43428 5.59354 5.62528 5.63240 5.66673 5.74859 5.86719 5.89142 5.91447 6.01921 6.05364 6.10811 6.12795 6.18366 6.33294 6.35082 6.42158 6.44442 6.56809 6.64573 6.67981 6.70382 6.81583 6.86242 7.02011 7.17092 7.89645 8.02569 8.44052 9.23322 9.96059 10.16846 11.42936 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.009700 C = 0.008732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.775745 B = 2885.803325 C = 3205.761069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.105 4.105 3 C -0.205 4.205 4 C 0.199 3.801 5 H 0.056 0.944 6 N -0.746 5.746 7 C -0.238 4.238 8 H 0.090 0.910 9 C 0.004 3.996 10 N -0.935 5.935 11 Si 0.878 3.122 12 H -0.284 1.284 13 H -0.292 1.292 14 H -0.277 1.277 15 C -0.059 4.059 16 C 0.088 3.912 17 O -0.574 6.574 18 C -0.134 4.134 19 C -0.165 4.165 20 C -0.120 4.120 21 C -0.132 4.132 22 H 0.126 0.874 23 H 0.032 0.968 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.113 0.887 29 H 0.362 0.638 30 H 0.258 0.742 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.370 0.630 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.089 0.911 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.632 13.972 6.471 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.127 4.127 3 C -0.261 4.261 4 C 0.089 3.911 5 H 0.074 0.926 6 N -0.389 5.389 7 C -0.368 4.368 8 H 0.107 0.893 9 C -0.191 4.191 10 N -0.583 5.583 11 Si 0.708 3.292 12 H -0.211 1.211 13 H -0.218 1.218 14 H -0.203 1.203 15 C -0.060 4.060 16 C 0.010 3.990 17 O -0.378 6.378 18 C -0.171 4.171 19 C -0.202 4.202 20 C -0.157 4.157 21 C -0.169 4.169 22 H 0.143 0.857 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.130 0.870 29 H 0.196 0.804 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.216 0.784 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.107 0.893 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.774 14.121 5.892 16.354 hybrid contribution -0.632 -1.187 0.700 1.516 sum -6.406 12.934 6.591 15.867 Atomic orbital electron populations 1.23669 0.97176 1.02027 1.03996 1.21594 0.95684 0.94721 1.00654 1.23379 1.01516 0.98775 1.02477 1.20220 0.96838 0.83977 0.90067 0.92569 1.42889 1.21782 1.02791 1.71419 1.19097 0.99641 0.88444 1.29662 0.89257 1.24639 0.97620 0.95988 1.00887 1.69701 1.35922 1.03376 1.49325 0.86643 0.85066 0.78324 0.79136 1.21086 1.21805 1.20274 1.21454 0.95646 0.94992 0.93954 1.22189 0.94328 0.97519 0.84926 1.86440 1.62022 1.73265 1.16117 1.23110 0.98086 0.94748 1.01149 1.23697 0.95410 0.98059 1.02995 1.22259 0.97604 0.95673 1.00179 1.22779 0.94076 0.97224 1.02809 0.85712 0.94873 0.92862 0.91316 0.93256 0.94402 0.86979 0.80446 0.93158 0.94101 0.92718 0.78433 0.91536 0.88900 0.86578 0.92515 0.91934 0.91736 0.89327 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.46 6.27 37.16 0.23 -3.23 16 2 C -0.11 -1.84 2.85 -90.62 -0.26 -2.10 16 3 C -0.21 -2.91 7.07 37.16 0.26 -2.64 16 4 C 0.20 3.78 1.74 -67.93 -0.12 3.66 16 5 H 0.06 1.13 7.91 -51.93 -0.41 0.72 16 6 N -0.75 -17.24 3.99 -53.42 -0.21 -17.45 16 7 C -0.24 -6.62 10.41 -15.05 -0.16 -6.78 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 9 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 10 N -0.94 -29.35 13.97 55.49 0.78 -28.58 16 11 Si 0.88 22.21 27.73 -169.99 -4.71 17.49 16 12 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 15 C -0.06 -0.96 0.48 -153.39 -0.07 -1.04 16 16 C 0.09 1.41 5.72 37.16 0.21 1.63 16 17 O -0.57 -8.13 12.11 -35.23 -0.43 -8.55 16 18 C -0.13 -1.84 5.04 -25.08 -0.13 -1.96 16 19 C -0.17 -2.06 5.09 -24.74 -0.13 -2.19 16 20 C -0.12 -1.60 5.90 -25.07 -0.15 -1.75 16 21 C -0.13 -2.13 4.36 -25.61 -0.11 -2.24 16 22 H 0.13 1.80 0.50 -86.88 -0.04 1.75 16 23 H 0.03 0.49 8.14 -51.92 -0.42 0.06 16 24 H 0.05 0.97 6.67 -51.93 -0.35 0.63 16 25 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.05 0.69 7.53 -51.93 -0.39 0.30 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.11 1.41 2.13 -56.51 -0.12 1.29 16 29 H 0.36 8.36 3.96 -40.82 -0.16 8.19 16 30 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.00 7.88 -51.93 -0.41 0.59 16 33 H 0.37 3.66 9.12 45.56 0.42 4.08 16 34 H 0.07 0.92 7.23 -51.93 -0.38 0.55 16 35 H 0.09 1.22 4.41 -51.93 -0.23 0.99 16 36 H 0.12 1.46 3.11 -51.93 -0.16 1.30 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.76 7.74 -51.93 -0.40 0.36 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.56 3.32 -51.93 -0.17 1.38 16 41 H 0.06 0.98 7.33 -51.93 -0.38 0.60 16 LS Contribution 283.03 15.07 4.27 4.27 Total: -1.00 -31.05 283.03 -6.14 -37.19 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.32 Total: 14.25 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.51 Total: -18.62 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.56 Total: -46.03 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.43 Total: -8.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.71 Total: 17.49 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.05 -6.14 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459518002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.900 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds