Wall clock time and date at job start Sun Mar 29 2020 22:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47384 * 2 1 4 4 C 1.52998 * 109.47121 * 119.99918 * 2 1 3 5 5 H 1.08996 * 109.47506 * 188.45280 * 4 2 1 6 6 N 1.46502 * 109.47280 * 68.44716 * 4 2 1 7 7 C 1.36947 * 119.99685 * 89.29332 * 6 4 2 8 8 H 1.07998 * 119.99725 * 0.02562 * 7 6 4 9 9 C 1.38814 * 119.99648 * 180.02562 * 7 6 4 10 10 N 1.31625 * 119.99332 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 120.00156 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46863 * 90.00681 * 11 9 7 13 13 H 1.48509 * 109.46993 * 210.00233 * 11 9 7 14 14 H 1.48493 * 109.47211 * 330.00167 * 11 9 7 15 15 C 1.53005 * 109.47102 * 308.45234 * 4 2 1 16 16 C 1.52997 * 110.01575 * 188.85515 * 15 4 2 17 17 O 1.42904 * 109.46993 * 181.27534 * 16 15 4 18 18 C 1.54260 * 110.07290 * 310.27452 * 15 4 2 19 19 C 1.54888 * 104.19609 * 95.69682 * 18 15 4 20 20 C 1.54884 * 102.75068 * 37.94094 * 19 18 15 21 21 C 1.53872 * 110.03061 * 67.46543 * 15 4 2 22 22 H 1.08997 * 109.47630 * 298.66366 * 1 2 3 23 23 H 1.09010 * 109.46984 * 58.65924 * 1 2 3 24 24 H 1.08996 * 109.47206 * 178.65987 * 1 2 3 25 25 H 1.08997 * 109.47717 * 239.99877 * 2 1 3 26 26 H 1.09000 * 109.47201 * 166.91720 * 3 2 1 27 27 H 1.08997 * 109.46778 * 286.91869 * 3 2 1 28 28 H 1.08997 * 109.46824 * 46.91767 * 3 2 1 29 29 H 0.97001 * 120.00746 * 269.30226 * 6 4 2 30 30 H 0.97000 * 119.99410 * 179.97438 * 10 9 7 31 31 H 1.08995 * 109.47556 * 61.27656 * 16 15 4 32 32 H 1.08997 * 109.47343 * 301.27291 * 16 15 4 33 33 H 0.96697 * 113.99941 * 180.02562 * 17 16 15 34 34 H 1.09004 * 110.48668 * 214.37429 * 18 15 4 35 35 H 1.09002 * 110.48710 * 337.01661 * 18 15 4 36 36 H 1.09005 * 110.75435 * 279.62300 * 19 18 15 37 37 H 1.08996 * 110.75754 * 156.26248 * 19 18 15 38 38 H 1.09000 * 110.48971 * 203.37890 * 20 19 18 39 39 H 1.09002 * 110.59663 * 80.79471 * 20 19 18 40 40 H 1.09002 * 110.03931 * 359.95254 * 21 15 4 41 41 H 1.09006 * 110.03529 * 121.33614 * 21 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 3.1194 -0.5923 1.3280 6 7 1.7244 -2.1485 1.1522 7 6 2.6105 -3.0068 0.5575 8 1 3.5421 -2.6314 0.1606 9 6 2.3113 -4.3591 0.4651 10 7 3.1632 -5.1841 -0.1060 11 14 0.7002 -5.0083 1.1524 12 1 -0.3435 -4.9594 0.0972 13 1 0.8837 -6.4117 1.6024 14 1 0.2798 -4.1703 2.3039 15 6 1.3642 -0.1328 2.4895 16 6 2.0203 -0.6867 3.7558 17 8 1.3615 -0.1529 4.9061 18 6 1.4691 1.4061 2.4697 19 6 0.1270 1.8705 1.8516 20 6 -0.8917 0.8740 2.4585 21 6 -0.1368 -0.4712 2.4823 22 1 -0.3634 0.4929 0.9017 23 1 -0.3633 0.5346 -0.8778 24 1 -0.3633 -1.0273 -0.0240 25 1 1.8934 -0.5138 -0.8899 26 1 3.1049 1.4514 0.2326 27 1 1.8792 1.8847 -0.9832 28 1 1.4994 2.0190 0.7506 29 1 0.8877 -2.4857 1.5089 30 1 2.9543 -6.1291 -0.1702 31 1 3.0721 -0.4015 3.7746 32 1 1.9383 -1.7735 3.7619 33 1 1.7262 -0.4615 5.7468 34 1 1.5772 1.7942 3.4825 35 1 2.3058 1.7235 1.8473 36 1 0.1516 1.7842 0.7653 37 1 -0.1046 2.8918 2.1538 38 1 -1.7780 0.8030 1.8279 39 1 -1.1670 1.1750 3.4693 40 1 -0.3842 -1.0538 1.5950 41 1 -0.3978 -1.0307 3.3807 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459518002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:25 Heat of formation + Delta-G solvation = 33.734610 kcal Electronic energy + Delta-G solvation = -19776.438579 eV Core-core repulsion = 17080.794596 eV Total energy + Delta-G solvation = -2695.643983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.68057 -37.49337 -36.54822 -34.32216 -33.41023 -31.74111 -30.70119 -26.77961 -26.70570 -25.25861 -24.32025 -21.92253 -20.88116 -19.99515 -19.33754 -18.01294 -17.49638 -16.55644 -16.13898 -15.81469 -15.59050 -15.16260 -14.85440 -14.55050 -14.16705 -13.74082 -13.67879 -13.36246 -13.10524 -12.89614 -12.35247 -12.24805 -12.11112 -11.96607 -11.84558 -11.77494 -11.58258 -11.50172 -11.27174 -11.12669 -10.89692 -10.78214 -10.68799 -10.14344 -9.23683 -8.03217 -5.33629 1.32484 1.34681 1.41793 2.45260 3.27346 3.31716 3.49197 3.78375 3.80739 3.98122 4.23969 4.30025 4.37682 4.40552 4.48554 4.58725 4.65692 4.68239 4.76408 4.86355 4.93537 4.96161 5.03866 5.12150 5.15753 5.19045 5.24905 5.30850 5.34963 5.46343 5.53266 5.54200 5.60049 5.66855 5.74401 5.83091 6.22028 6.92468 7.08332 7.86471 8.05489 9.18909 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024734 B = 0.009700 C = 0.008732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.775745 B = 2885.803325 C = 3205.761069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.200 4.200 4 C 0.192 3.808 5 H 0.038 0.962 6 N -0.746 5.746 7 C -0.219 4.219 8 H 0.055 0.945 9 C -0.063 4.063 10 N -0.985 5.985 11 Si 0.944 3.056 12 H -0.281 1.281 13 H -0.295 1.295 14 H -0.255 1.255 15 C -0.058 4.058 16 C 0.093 3.907 17 O -0.573 6.573 18 C -0.130 4.130 19 C -0.163 4.163 20 C -0.117 4.117 21 C -0.137 4.137 22 H 0.150 0.850 23 H 0.048 0.952 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.137 0.863 29 H 0.364 0.636 30 H 0.256 0.744 31 H 0.044 0.956 32 H 0.026 0.974 33 H 0.390 0.610 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.653 16.645 7.819 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.125 4.125 3 C -0.256 4.256 4 C 0.084 3.916 5 H 0.057 0.943 6 N -0.389 5.389 7 C -0.350 4.350 8 H 0.073 0.927 9 C -0.255 4.255 10 N -0.636 5.636 11 Si 0.772 3.228 12 H -0.207 1.207 13 H -0.222 1.222 14 H -0.180 1.180 15 C -0.059 4.059 16 C 0.015 3.985 17 O -0.380 6.380 18 C -0.167 4.167 19 C -0.199 4.199 20 C -0.154 4.154 21 C -0.174 4.174 22 H 0.167 0.833 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.155 0.845 29 H 0.198 0.802 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.807 16.855 7.272 19.948 hybrid contribution 0.084 -1.959 0.301 1.984 sum -7.722 14.895 7.573 18.408 Atomic orbital electron populations 1.23737 0.95771 1.01006 1.06046 1.21482 0.96889 0.96415 0.97674 1.23376 1.01682 0.96347 1.04159 1.20449 0.96377 0.82060 0.92716 0.94348 1.42865 1.20974 1.04168 1.70903 1.19042 0.98875 0.89108 1.28011 0.92673 1.25381 1.01405 0.96363 1.02303 1.69877 1.38358 1.03546 1.51834 0.85561 0.80677 0.77469 0.79077 1.20694 1.22186 1.18017 1.21377 0.95463 0.96901 0.92174 1.21987 0.94752 0.95831 0.85924 1.86385 1.62050 1.73015 1.16597 1.23118 0.99346 0.92248 1.02039 1.23667 0.94013 0.99499 1.02766 1.22257 0.97991 0.93818 1.01329 1.22792 0.94236 0.98850 1.01516 0.83326 0.93256 0.95445 0.95406 0.93327 0.93151 0.84522 0.80193 0.93522 0.93733 0.95585 0.76157 0.90803 0.88208 0.86594 0.89473 0.90346 0.90792 0.90947 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.48 6.27 71.98 0.45 -6.03 16 2 C -0.10 -3.58 2.85 -10.79 -0.03 -3.61 16 3 C -0.20 -5.20 7.07 71.98 0.51 -4.69 16 4 C 0.19 7.33 1.74 44.99 0.08 7.41 16 5 H 0.04 1.59 7.91 -2.39 -0.02 1.57 16 6 N -0.75 -35.11 3.99 -322.93 -1.29 -36.40 16 7 C -0.22 -12.65 10.41 84.03 0.88 -11.77 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 9 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 10 N -0.98 -64.22 13.97 21.65 0.30 -63.91 16 11 Si 0.94 46.81 27.73 68.60 1.90 48.71 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 13 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 14 H -0.26 -11.59 6.52 99.48 0.65 -10.94 16 15 C -0.06 -1.79 0.48 -51.46 -0.02 -1.82 16 16 C 0.09 2.88 5.72 71.98 0.41 3.30 16 17 O -0.57 -14.76 12.11 -148.98 -1.80 -16.56 16 18 C -0.13 -3.13 5.04 31.67 0.16 -2.97 16 19 C -0.16 -3.30 5.09 31.88 0.16 -3.14 16 20 C -0.12 -2.64 5.90 31.67 0.19 -2.46 16 21 C -0.14 -4.12 4.36 31.32 0.14 -3.98 16 22 H 0.15 3.84 0.50 -35.22 -0.02 3.83 16 23 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.03 0.97 6.67 -2.39 -0.02 0.96 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.27 7.53 -2.39 -0.02 1.26 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.14 2.91 2.13 -6.69 -0.01 2.90 16 29 H 0.36 16.81 3.96 -92.71 -0.37 16.45 16 30 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 0.94 7.88 -2.39 -0.02 0.93 16 33 H 0.39 6.70 9.12 -74.06 -0.68 6.03 16 34 H 0.07 1.73 7.23 -2.39 -0.02 1.71 16 35 H 0.10 2.29 4.41 -2.39 -0.01 2.28 16 36 H 0.12 2.39 3.11 -2.38 -0.01 2.39 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.57 7.74 -2.39 -0.02 1.55 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.07 2.44 3.32 -2.39 -0.01 2.43 16 41 H 0.05 1.54 7.33 -2.38 -0.02 1.52 16 Total: -1.00 -69.32 283.03 2.42 -66.90 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.07 Total: 34.37 kcal Atomic # 6 Polarization: -36.49 SS G_CDS: 3.38 Total: -33.10 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -0.99 Total: -100.31 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.80 Total: -16.56 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.71 kcal Total: -69.32 2.42 -66.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459518002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.633 kcal (2) G-P(sol) polarization free energy of solvation -69.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds