Wall clock time and date at job start Sun Mar 29 2020 22:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99899 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31522 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47574 * 89.99780 * 8 6 4 10 10 H 1.48500 * 109.47346 * 209.99892 * 8 6 4 11 11 H 1.48499 * 109.47067 * 329.99541 * 8 6 4 12 12 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 13 13 N 1.46902 * 109.46626 * 300.00172 * 12 2 1 14 14 C 1.46905 * 110.99800 * 179.97438 * 13 12 2 15 15 H 1.09000 * 109.53556 * 325.00375 * 14 13 12 16 16 C 1.54194 * 109.53847 * 204.83303 * 14 13 12 17 17 C 1.46288 * 111.98712 * 162.60201 * 16 14 13 18 18 C 1.54123 * 112.20134 * 61.41885 * 17 16 14 19 19 O 1.40325 * 108.70108 * 280.43678 * 18 17 16 20 20 C 1.43998 * 116.57599 * 95.04208 * 19 18 17 21 21 C 1.50625 * 109.53615 * 85.16046 * 14 13 12 22 22 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 23 23 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 24 24 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 27 27 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 28 28 H 0.96992 * 120.00032 * 180.02562 * 7 6 4 29 29 H 1.09000 * 109.47050 * 59.99996 * 12 2 1 30 30 H 1.09001 * 109.46801 * 180.02562 * 12 2 1 31 31 H 1.00891 * 111.00138 * 56.04633 * 13 12 2 32 32 H 1.09003 * 108.98075 * 283.24805 * 16 14 13 33 33 H 1.08997 * 108.98211 * 41.95890 * 16 14 13 34 34 H 1.09008 * 108.93885 * 182.11430 * 17 16 14 35 35 H 1.08995 * 108.93859 * 300.71687 * 17 16 14 36 36 H 1.08995 * 109.59707 * 40.20228 * 18 17 16 37 37 H 1.08995 * 109.60215 * 160.67580 * 18 17 16 38 38 H 1.09004 * 108.69303 * 78.91179 * 20 19 18 39 39 H 1.09002 * 108.68975 * 197.00699 * 20 19 18 40 40 H 1.08995 * 108.88745 * 330.97683 * 21 14 13 41 41 H 1.09003 * 108.88012 * 89.43860 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4867 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7122 12 6 2.0400 -0.7213 1.2493 13 7 1.5502 -0.0288 2.4487 14 6 2.0207 -0.6952 3.6704 15 1 2.0603 -1.7720 3.5060 16 6 1.0544 -0.3858 4.8314 17 6 1.2201 -1.3193 5.9455 18 6 2.6345 -1.2543 6.5543 19 8 3.5093 -1.9888 5.7392 20 6 4.2436 -1.2455 4.7483 21 6 3.3947 -0.1888 4.0231 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.7083 1.1608 -3.4844 29 1 1.6767 -1.7490 1.2492 30 1 3.1300 -0.7209 1.2494 31 1 0.5438 0.0413 2.4401 32 1 1.2408 0.6275 5.1873 33 1 0.0295 -0.4485 4.4659 34 1 0.4907 -1.0796 6.7193 35 1 1.0348 -2.3324 5.5887 36 1 2.9644 -0.2166 6.6026 37 1 2.6215 -1.6833 7.5562 38 1 5.0817 -0.7472 5.2355 39 1 4.6352 -1.9429 4.0078 40 1 3.9069 0.1086 3.1081 41 1 3.2941 0.6839 4.6684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459732039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:36 Heat of formation + Delta-G solvation = -76.247355 kcal Electronic energy + Delta-G solvation = -18478.920190 eV Core-core repulsion = 15778.507031 eV Total energy + Delta-G solvation = -2700.413159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.56780 -38.54586 -36.48738 -34.33273 -33.25163 -31.42785 -27.72984 -27.45923 -27.22005 -26.34551 -24.64909 -21.84059 -21.08581 -20.23247 -18.00277 -17.77301 -17.36187 -16.73067 -16.13706 -15.91323 -15.40917 -15.18687 -14.68897 -14.34162 -14.19387 -13.84835 -13.73527 -13.44690 -13.04442 -12.98034 -12.62762 -12.50059 -12.37892 -12.18014 -12.12108 -11.95611 -11.66313 -11.47656 -11.36299 -11.28322 -10.86991 -10.59655 -10.37784 -10.34272 -9.18050 -7.97078 -6.13977 1.41551 1.43745 1.52215 2.46086 2.91169 3.24873 3.34943 3.76933 3.88083 4.06267 4.14037 4.30800 4.46174 4.53490 4.56419 4.64549 4.66159 4.70968 4.84861 4.86667 5.01197 5.04308 5.10542 5.17207 5.18857 5.24209 5.26166 5.33031 5.41099 5.44789 5.53855 5.69590 5.76806 6.18331 6.26683 6.34655 6.48830 6.50347 6.66491 6.95294 7.53562 9.01048 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.040815 B = 0.005302 C = 0.005033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.853679 B = 5279.954881 C = 5562.276939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.059 3.941 3 C -0.104 4.104 4 C -0.527 4.527 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.274 1.274 12 C 0.093 3.907 13 N -0.682 5.682 14 C 0.089 3.911 15 H 0.026 0.974 16 C -0.113 4.113 17 C -0.145 4.145 18 C 0.062 3.938 19 O -0.405 6.405 20 C 0.066 3.934 21 C -0.138 4.138 22 H 0.035 0.965 23 H 0.056 0.944 24 H 0.014 0.986 25 H 0.010 0.990 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.257 0.743 29 H 0.002 0.998 30 H 0.047 0.953 31 H 0.339 0.661 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.845 -1.686 16.654 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.058 3.942 3 C -0.162 4.162 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.036 4.036 13 N -0.314 5.314 14 C -0.021 4.021 15 H 0.044 0.956 16 C -0.151 4.151 17 C -0.183 4.183 18 C -0.015 4.015 19 O -0.325 6.325 20 C -0.010 4.010 21 C -0.176 4.176 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.293 -1.290 16.525 16.733 hybrid contribution -0.321 -0.961 -1.412 1.738 sum 1.972 -2.251 15.113 15.406 Atomic orbital electron populations 1.21667 0.98187 0.97965 1.00066 1.18152 0.92412 0.92958 0.90641 1.21454 0.97031 0.98267 0.99413 1.21425 1.31275 1.11836 0.92047 0.93965 1.25523 0.95343 0.95620 1.01117 1.69963 1.37391 1.23549 1.23286 0.85780 0.78690 0.78457 0.79992 1.20522 1.20959 1.19876 1.21810 0.98196 0.93484 0.90076 1.60635 1.16233 1.53605 1.00940 1.21257 0.95381 0.95334 0.90129 0.95622 1.20735 0.98697 1.00678 0.94990 1.21080 0.98906 0.99782 0.98526 1.22522 0.88176 0.96919 0.93854 1.87423 1.58755 1.37761 1.48537 1.22938 0.93150 0.94547 0.90380 1.21877 0.95763 0.98992 1.00992 0.94649 0.92510 0.96643 0.97103 0.93325 0.94616 0.93301 0.98020 0.93474 0.84143 0.90841 0.92016 0.88983 0.92671 0.92024 0.88215 0.91353 0.90354 0.91501 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 7.92 71.98 0.57 -5.16 16 2 C 0.06 2.87 0.57 -52.93 -0.03 2.84 16 3 C -0.10 -5.08 8.09 71.98 0.58 -4.49 16 4 C -0.53 -28.83 8.01 25.60 0.21 -28.63 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.02 1.26 5.15 84.65 0.44 1.69 16 7 N -0.90 -50.62 9.35 21.45 0.20 -50.42 16 8 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.09 3.94 4.32 86.31 0.37 4.31 16 13 N -0.68 -23.71 5.45 -493.44 -2.69 -26.40 16 14 C 0.09 2.57 2.19 44.55 0.10 2.66 16 15 H 0.03 0.84 7.49 -2.39 -0.02 0.83 16 16 C -0.11 -2.57 4.85 28.93 0.14 -2.43 16 17 C -0.14 -2.79 5.47 28.91 0.16 -2.63 16 18 C 0.06 1.15 6.38 72.36 0.46 1.62 16 19 O -0.41 -9.94 10.17 -143.47 -1.46 -11.40 16 20 C 0.07 1.55 6.66 72.23 0.48 2.03 16 21 C -0.14 -3.61 4.96 30.07 0.15 -3.46 16 22 H 0.03 1.46 6.57 -2.39 -0.02 1.44 16 23 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 24 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 26 H 0.05 2.62 6.07 -2.39 -0.01 2.60 16 27 H 0.03 1.58 7.60 -2.39 -0.02 1.56 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.11 16 29 H 0.00 0.07 8.06 -2.39 -0.02 0.05 16 30 H 0.05 2.04 7.41 -2.39 -0.02 2.02 16 31 H 0.34 11.57 6.13 -89.70 -0.55 11.02 16 32 H 0.07 1.55 7.60 -2.39 -0.02 1.54 16 33 H 0.06 1.41 7.70 -2.39 -0.02 1.39 16 34 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 36 H 0.06 1.03 6.98 -2.39 -0.02 1.02 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 2.02 7.16 -2.39 -0.02 2.00 16 41 H 0.07 1.75 6.84 -2.39 -0.02 1.73 16 Total: -1.00 -58.37 305.14 2.14 -56.23 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.44 Total: 17.94 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.62 Total: -31.66 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -2.49 Total: -76.82 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -1.46 Total: -11.40 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.37 2.14 -56.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459732039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.020 kcal (2) G-P(sol) polarization free energy of solvation -58.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds